Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

Click here to switch to the map view.

The map label for this gene is ydhK [C]

Identifier: 197118741

GI number: 197118741

Start: 2736916

End: 2738835

Strand: Direct

Name: ydhK [C]

Synonym: Gbem_2360

Alternate gene names: 197118741

Gene position: 2736916-2738835 (Clockwise)

Preceding gene: 197118740

Following gene: 197118742

Centisome position: 59.3

GC content: 64.95

Gene sequence:

>1920_bases
ATGCAGTGGCCTAGACTGCTCCCCGCTCTCAGAGCAACCGCCGCCGCACTCGCCGCGCTGGTAGTCGCCCATCTGCTCCG
CCTGGAAAACCCCTACTGGGCCGCCATGACCGCGCTGATAGTCGTCCAGCCCACGAGGACGCTTTTGTTCGAGAAGAGCT
ATTACCGCCTGGTCGGCACCGCCATAGGTTCCGCAGCCGCCTGGCTATTGCTGCTCCAGACCACCTCCCCGCTCGCCCTT
ACCGCCGCCCTCTCCATCTGGATCGCCGCCTGTGTCGGCATCGGCAACCTGCTGCACGGCCTGCGCTCGTATGCCGCATT
GATGGCAGCCTGCACCTGCGCCGTCATCGCCATGAGCGGCTATCAAAACCCCGGCCACTTGGGCGGCATGGCCTTCGGCC
GGGTCGCCTGCATCATCGTCGGCATCCTCGTTACCACCTGCGTCACCGCCCTTTTCACTCCGAGCCACAGCATGGACGAG
CTGGGCGACCGGCTCAATAAGGTCGCCGCAGATGCGGTGCGCTGGCTGGCACAGCTCGCAGAAGGCGCCGGCAAGCAGGC
TGGCACCGACTTGGAACAGGAGATCCTTTGCGAGGCAGCTGAAATAGAGGCGCTCCTGGATGCCGGCGGGATAAGCTCCT
CTTTCAGGAGCCACAGGCGGAACGCCAGAAACGTGCTGGGCGCCCTCCTTTCCATGCTGGCCGCGGGGAAGCTCGACACG
GAATCGCCGGAGAGACTGCAACTGCTGCAGCGAGCAGCTTCAGGGTGGAGCGAAGCTTTGACCCGGCGGCTTCAGGAACT
GGCAGCCGGGCTGGAACGCGACCCGGGGCCTGAATGGTGCGGCAAGGCGAAAGCCCTGGCAGCCGAGACGACGCTCCACC
TCCCACTGCTGGGGCGGGCACTGTACCATCTAACCGGTACCCTGGAGGTCGCGCTGGCCAGCCATGCGGACGACGGCGCC
AACGAGGCAACTTTGCACCTGATCCGCCACCGTGACTGGCAACAGGCAGGGCGCGCCGCCTTTCGCGGCGGAATCGTCAT
CGCCGTCGTCGGTCTCGTCTGGTCGCTGACCGGATGGAGCAAAGGTCCGCTCATGCTCATGGCGCTCTCCATCATGATCA
GCATTTTTTCCAGCAAGGAGCACCCCGCCAGGTTCGTCGGCCTTATCTTCATAGGGGCGGCGACCGGGTCTACGCTGGCC
GTATTCTGCCGGCTGGTGCTGCTCCACGGGGTCGGCGACTTCGCCGTCACCGCCGCCGTCATCGCCCCTTTCATACTTCT
GGGCGCCTACGCCATGCAGCATCGCCGCACCGTGATACCCGCGACGGACGCCACCCTCTTCTTCATCTTCGTGATCCAGC
CGGGGGTCTCCGTCACAGTCGCCGCGAACGACCTCGCCATCGGAGCCGTCGCCATGGTCCTTGGGGTAGCCTCCGCCTGG
ATGGGCTACACCTTCCTCGTTCCCGTCAATCCCGCCCTGCGCATGCGCTCACTCTTGGCTGCCATGGCAAAAGACATCGC
ACAGATGTCGGCGCAGGCAAACCGCGGTTCTCGGGTACGCATCCGTGGCAAATTGCAGCATCGGGTGATACGGCTGGTGG
CATTGGCCAGAAACTTCGACATCACCCCGGCAGCTGCGGTATCGGGAGCAATCGGCGTCCTTGCGCTTACCGCCACCATC
GAGCGGTTGCGCGAGAAACTGGAGTACGAAGAGCTATCCCCGGAGTCCGCGCGGCAGCTGCGGGAGACGCTCGACCGGAT
CGCCTGCATGGCACAGACCCCGGCCCTCGAAAGCCGCCTGCTTCAGGGGTGGGCAGATGACCTTTCGGCTGTCCTGAAAC
CCTTGCCCCCCACAGAGGATAGAGTTGGGGCAACAGACGAAGGGGCTGCCATGGGCGCCGTGATGGTGCCGGCTTCCTGA

Upstream 100 bases:

>100_bases
AACTGCTGAACATCTTTACCGAAGATGAGGTGGAGCAACTGGCCGGTTTCATGGAAAGGCTCGAGTCGGCGGTGACAGAT
GCCAGACGGAAAGGAAGATG

Downstream 100 bases:

>100_bases
CATAACAAAGATGAACTTCGAACCTGGGGGCGGACAGCGAGCCGCGTGAAGGTAGACAACGAAAAAGGAGCAAGAAATGG
AAATCGCAGGAAAAACAGTT

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 639; Mature: 639

Protein sequence:

>639_residues
MQWPRLLPALRATAAALAALVVAHLLRLENPYWAAMTALIVVQPTRTLLFEKSYYRLVGTAIGSAAAWLLLLQTTSPLAL
TAALSIWIAACVGIGNLLHGLRSYAALMAACTCAVIAMSGYQNPGHLGGMAFGRVACIIVGILVTTCVTALFTPSHSMDE
LGDRLNKVAADAVRWLAQLAEGAGKQAGTDLEQEILCEAAEIEALLDAGGISSSFRSHRRNARNVLGALLSMLAAGKLDT
ESPERLQLLQRAASGWSEALTRRLQELAAGLERDPGPEWCGKAKALAAETTLHLPLLGRALYHLTGTLEVALASHADDGA
NEATLHLIRHRDWQQAGRAAFRGGIVIAVVGLVWSLTGWSKGPLMLMALSIMISIFSSKEHPARFVGLIFIGAATGSTLA
VFCRLVLLHGVGDFAVTAAVIAPFILLGAYAMQHRRTVIPATDATLFFIFVIQPGVSVTVAANDLAIGAVAMVLGVASAW
MGYTFLVPVNPALRMRSLLAAMAKDIAQMSAQANRGSRVRIRGKLQHRVIRLVALARNFDITPAAAVSGAIGVLALTATI
ERLREKLEYEELSPESARQLRETLDRIACMAQTPALESRLLQGWADDLSAVLKPLPPTEDRVGATDEGAAMGAVMVPAS

Sequences:

>Translated_639_residues
MQWPRLLPALRATAAALAALVVAHLLRLENPYWAAMTALIVVQPTRTLLFEKSYYRLVGTAIGSAAAWLLLLQTTSPLAL
TAALSIWIAACVGIGNLLHGLRSYAALMAACTCAVIAMSGYQNPGHLGGMAFGRVACIIVGILVTTCVTALFTPSHSMDE
LGDRLNKVAADAVRWLAQLAEGAGKQAGTDLEQEILCEAAEIEALLDAGGISSSFRSHRRNARNVLGALLSMLAAGKLDT
ESPERLQLLQRAASGWSEALTRRLQELAAGLERDPGPEWCGKAKALAAETTLHLPLLGRALYHLTGTLEVALASHADDGA
NEATLHLIRHRDWQQAGRAAFRGGIVIAVVGLVWSLTGWSKGPLMLMALSIMISIFSSKEHPARFVGLIFIGAATGSTLA
VFCRLVLLHGVGDFAVTAAVIAPFILLGAYAMQHRRTVIPATDATLFFIFVIQPGVSVTVAANDLAIGAVAMVLGVASAW
MGYTFLVPVNPALRMRSLLAAMAKDIAQMSAQANRGSRVRIRGKLQHRVIRLVALARNFDITPAAAVSGAIGVLALTATI
ERLREKLEYEELSPESARQLRETLDRIACMAQTPALESRLLQGWADDLSAVLKPLPPTEDRVGATDEGAAMGAVMVPAS
>Mature_639_residues
MQWPRLLPALRATAAALAALVVAHLLRLENPYWAAMTALIVVQPTRTLLFEKSYYRLVGTAIGSAAAWLLLLQTTSPLAL
TAALSIWIAACVGIGNLLHGLRSYAALMAACTCAVIAMSGYQNPGHLGGMAFGRVACIIVGILVTTCVTALFTPSHSMDE
LGDRLNKVAADAVRWLAQLAEGAGKQAGTDLEQEILCEAAEIEALLDAGGISSSFRSHRRNARNVLGALLSMLAAGKLDT
ESPERLQLLQRAASGWSEALTRRLQELAAGLERDPGPEWCGKAKALAAETTLHLPLLGRALYHLTGTLEVALASHADDGA
NEATLHLIRHRDWQQAGRAAFRGGIVIAVVGLVWSLTGWSKGPLMLMALSIMISIFSSKEHPARFVGLIFIGAATGSTLA
VFCRLVLLHGVGDFAVTAAVIAPFILLGAYAMQHRRTVIPATDATLFFIFVIQPGVSVTVAANDLAIGAVAMVLGVASAW
MGYTFLVPVNPALRMRSLLAAMAKDIAQMSAQANRGSRVRIRGKLQHRVIRLVALARNFDITPAAAVSGAIGVLALTATI
ERLREKLEYEELSPESARQLRETLDRIACMAQTPALESRLLQGWADDLSAVLKPLPPTEDRVGATDEGAAMGAVMVPAS

Specific function: Unknown

COG id: COG1289

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aromatic acid exporter ArAE (TC 2.A.85) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006726 [H]

Pfam domain/function: PF04632 FUSC [H]

EC number: NA

Molecular weight: Translated: 67859; Mature: 67859

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQWPRLLPALRATAAALAALVVAHLLRLENPYWAAMTALIVVQPTRTLLFEKSYYRLVGT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEECCHHHHHHHHHHHHHHHH
AIGSAAAWLLLLQTTSPLALTAALSIWIAACVGIGNLLHGLRSYAALMAACTCAVIAMSG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YQNPGHLGGMAFGRVACIIVGILVTTCVTALFTPSHSMDELGDRLNKVAADAVRWLAQLA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EGAGKQAGTDLEQEILCEAAEIEALLDAGGISSSFRSHRRNARNVLGALLSMLAAGKLDT
HCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ESPERLQLLQRAASGWSEALTRRLQELAAGLERDPGPEWCGKAKALAAETTLHLPLLGRA
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHH
LYHLTGTLEVALASHADDGANEATLHLIRHRDWQQAGRAAFRGGIVIAVVGLVWSLTGWS
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCC
KGPLMLMALSIMISIFSSKEHPARFVGLIFIGAATGSTLAVFCRLVLLHGVGDFAVTAAV
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHCCCHHHHHHHH
IAPFILLGAYAMQHRRTVIPATDATLFFIFVIQPGVSVTVAANDLAIGAVAMVLGVASAW
HHHHHHHHHHHHHHCCEECCCCCCCEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHH
MGYTFLVPVNPALRMRSLLAAMAKDIAQMSAQANRGSRVRIRGKLQHRVIRLVALARNFD
HCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCC
ITPAAAVSGAIGVLALTATIERLREKLEYEELSPESARQLRETLDRIACMAQTPALESRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
LQGWADDLSAVLKPLPPTEDRVGATDEGAAMGAVMVPAS
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCC
>Mature Secondary Structure
MQWPRLLPALRATAAALAALVVAHLLRLENPYWAAMTALIVVQPTRTLLFEKSYYRLVGT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEECCHHHHHHHHHHHHHHHH
AIGSAAAWLLLLQTTSPLALTAALSIWIAACVGIGNLLHGLRSYAALMAACTCAVIAMSG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YQNPGHLGGMAFGRVACIIVGILVTTCVTALFTPSHSMDELGDRLNKVAADAVRWLAQLA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EGAGKQAGTDLEQEILCEAAEIEALLDAGGISSSFRSHRRNARNVLGALLSMLAAGKLDT
HCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ESPERLQLLQRAASGWSEALTRRLQELAAGLERDPGPEWCGKAKALAAETTLHLPLLGRA
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHH
LYHLTGTLEVALASHADDGANEATLHLIRHRDWQQAGRAAFRGGIVIAVVGLVWSLTGWS
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCC
KGPLMLMALSIMISIFSSKEHPARFVGLIFIGAATGSTLAVFCRLVLLHGVGDFAVTAAV
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHCCCHHHHHHHH
IAPFILLGAYAMQHRRTVIPATDATLFFIFVIQPGVSVTVAANDLAIGAVAMVLGVASAW
HHHHHHHHHHHHHHCCEECCCCCCCEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHH
MGYTFLVPVNPALRMRSLLAAMAKDIAQMSAQANRGSRVRIRGKLQHRVIRLVALARNFD
HCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCC
ITPAAAVSGAIGVLALTATIERLREKLEYEELSPESARQLRETLDRIACMAQTPALESRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
LQGWADDLSAVLKPLPPTEDRVGATDEGAAMGAVMVPAS
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9055427 [H]