| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is ydhK [C]
Identifier: 197118741
GI number: 197118741
Start: 2736916
End: 2738835
Strand: Direct
Name: ydhK [C]
Synonym: Gbem_2360
Alternate gene names: 197118741
Gene position: 2736916-2738835 (Clockwise)
Preceding gene: 197118740
Following gene: 197118742
Centisome position: 59.3
GC content: 64.95
Gene sequence:
>1920_bases ATGCAGTGGCCTAGACTGCTCCCCGCTCTCAGAGCAACCGCCGCCGCACTCGCCGCGCTGGTAGTCGCCCATCTGCTCCG CCTGGAAAACCCCTACTGGGCCGCCATGACCGCGCTGATAGTCGTCCAGCCCACGAGGACGCTTTTGTTCGAGAAGAGCT ATTACCGCCTGGTCGGCACCGCCATAGGTTCCGCAGCCGCCTGGCTATTGCTGCTCCAGACCACCTCCCCGCTCGCCCTT ACCGCCGCCCTCTCCATCTGGATCGCCGCCTGTGTCGGCATCGGCAACCTGCTGCACGGCCTGCGCTCGTATGCCGCATT GATGGCAGCCTGCACCTGCGCCGTCATCGCCATGAGCGGCTATCAAAACCCCGGCCACTTGGGCGGCATGGCCTTCGGCC GGGTCGCCTGCATCATCGTCGGCATCCTCGTTACCACCTGCGTCACCGCCCTTTTCACTCCGAGCCACAGCATGGACGAG CTGGGCGACCGGCTCAATAAGGTCGCCGCAGATGCGGTGCGCTGGCTGGCACAGCTCGCAGAAGGCGCCGGCAAGCAGGC TGGCACCGACTTGGAACAGGAGATCCTTTGCGAGGCAGCTGAAATAGAGGCGCTCCTGGATGCCGGCGGGATAAGCTCCT CTTTCAGGAGCCACAGGCGGAACGCCAGAAACGTGCTGGGCGCCCTCCTTTCCATGCTGGCCGCGGGGAAGCTCGACACG GAATCGCCGGAGAGACTGCAACTGCTGCAGCGAGCAGCTTCAGGGTGGAGCGAAGCTTTGACCCGGCGGCTTCAGGAACT GGCAGCCGGGCTGGAACGCGACCCGGGGCCTGAATGGTGCGGCAAGGCGAAAGCCCTGGCAGCCGAGACGACGCTCCACC TCCCACTGCTGGGGCGGGCACTGTACCATCTAACCGGTACCCTGGAGGTCGCGCTGGCCAGCCATGCGGACGACGGCGCC AACGAGGCAACTTTGCACCTGATCCGCCACCGTGACTGGCAACAGGCAGGGCGCGCCGCCTTTCGCGGCGGAATCGTCAT CGCCGTCGTCGGTCTCGTCTGGTCGCTGACCGGATGGAGCAAAGGTCCGCTCATGCTCATGGCGCTCTCCATCATGATCA GCATTTTTTCCAGCAAGGAGCACCCCGCCAGGTTCGTCGGCCTTATCTTCATAGGGGCGGCGACCGGGTCTACGCTGGCC GTATTCTGCCGGCTGGTGCTGCTCCACGGGGTCGGCGACTTCGCCGTCACCGCCGCCGTCATCGCCCCTTTCATACTTCT GGGCGCCTACGCCATGCAGCATCGCCGCACCGTGATACCCGCGACGGACGCCACCCTCTTCTTCATCTTCGTGATCCAGC CGGGGGTCTCCGTCACAGTCGCCGCGAACGACCTCGCCATCGGAGCCGTCGCCATGGTCCTTGGGGTAGCCTCCGCCTGG ATGGGCTACACCTTCCTCGTTCCCGTCAATCCCGCCCTGCGCATGCGCTCACTCTTGGCTGCCATGGCAAAAGACATCGC ACAGATGTCGGCGCAGGCAAACCGCGGTTCTCGGGTACGCATCCGTGGCAAATTGCAGCATCGGGTGATACGGCTGGTGG CATTGGCCAGAAACTTCGACATCACCCCGGCAGCTGCGGTATCGGGAGCAATCGGCGTCCTTGCGCTTACCGCCACCATC GAGCGGTTGCGCGAGAAACTGGAGTACGAAGAGCTATCCCCGGAGTCCGCGCGGCAGCTGCGGGAGACGCTCGACCGGAT CGCCTGCATGGCACAGACCCCGGCCCTCGAAAGCCGCCTGCTTCAGGGGTGGGCAGATGACCTTTCGGCTGTCCTGAAAC CCTTGCCCCCCACAGAGGATAGAGTTGGGGCAACAGACGAAGGGGCTGCCATGGGCGCCGTGATGGTGCCGGCTTCCTGA
Upstream 100 bases:
>100_bases AACTGCTGAACATCTTTACCGAAGATGAGGTGGAGCAACTGGCCGGTTTCATGGAAAGGCTCGAGTCGGCGGTGACAGAT GCCAGACGGAAAGGAAGATG
Downstream 100 bases:
>100_bases CATAACAAAGATGAACTTCGAACCTGGGGGCGGACAGCGAGCCGCGTGAAGGTAGACAACGAAAAAGGAGCAAGAAATGG AAATCGCAGGAAAAACAGTT
Product: membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 639; Mature: 639
Protein sequence:
>639_residues MQWPRLLPALRATAAALAALVVAHLLRLENPYWAAMTALIVVQPTRTLLFEKSYYRLVGTAIGSAAAWLLLLQTTSPLAL TAALSIWIAACVGIGNLLHGLRSYAALMAACTCAVIAMSGYQNPGHLGGMAFGRVACIIVGILVTTCVTALFTPSHSMDE LGDRLNKVAADAVRWLAQLAEGAGKQAGTDLEQEILCEAAEIEALLDAGGISSSFRSHRRNARNVLGALLSMLAAGKLDT ESPERLQLLQRAASGWSEALTRRLQELAAGLERDPGPEWCGKAKALAAETTLHLPLLGRALYHLTGTLEVALASHADDGA NEATLHLIRHRDWQQAGRAAFRGGIVIAVVGLVWSLTGWSKGPLMLMALSIMISIFSSKEHPARFVGLIFIGAATGSTLA VFCRLVLLHGVGDFAVTAAVIAPFILLGAYAMQHRRTVIPATDATLFFIFVIQPGVSVTVAANDLAIGAVAMVLGVASAW MGYTFLVPVNPALRMRSLLAAMAKDIAQMSAQANRGSRVRIRGKLQHRVIRLVALARNFDITPAAAVSGAIGVLALTATI ERLREKLEYEELSPESARQLRETLDRIACMAQTPALESRLLQGWADDLSAVLKPLPPTEDRVGATDEGAAMGAVMVPAS
Sequences:
>Translated_639_residues MQWPRLLPALRATAAALAALVVAHLLRLENPYWAAMTALIVVQPTRTLLFEKSYYRLVGTAIGSAAAWLLLLQTTSPLAL TAALSIWIAACVGIGNLLHGLRSYAALMAACTCAVIAMSGYQNPGHLGGMAFGRVACIIVGILVTTCVTALFTPSHSMDE LGDRLNKVAADAVRWLAQLAEGAGKQAGTDLEQEILCEAAEIEALLDAGGISSSFRSHRRNARNVLGALLSMLAAGKLDT ESPERLQLLQRAASGWSEALTRRLQELAAGLERDPGPEWCGKAKALAAETTLHLPLLGRALYHLTGTLEVALASHADDGA NEATLHLIRHRDWQQAGRAAFRGGIVIAVVGLVWSLTGWSKGPLMLMALSIMISIFSSKEHPARFVGLIFIGAATGSTLA VFCRLVLLHGVGDFAVTAAVIAPFILLGAYAMQHRRTVIPATDATLFFIFVIQPGVSVTVAANDLAIGAVAMVLGVASAW MGYTFLVPVNPALRMRSLLAAMAKDIAQMSAQANRGSRVRIRGKLQHRVIRLVALARNFDITPAAAVSGAIGVLALTATI ERLREKLEYEELSPESARQLRETLDRIACMAQTPALESRLLQGWADDLSAVLKPLPPTEDRVGATDEGAAMGAVMVPAS >Mature_639_residues MQWPRLLPALRATAAALAALVVAHLLRLENPYWAAMTALIVVQPTRTLLFEKSYYRLVGTAIGSAAAWLLLLQTTSPLAL TAALSIWIAACVGIGNLLHGLRSYAALMAACTCAVIAMSGYQNPGHLGGMAFGRVACIIVGILVTTCVTALFTPSHSMDE LGDRLNKVAADAVRWLAQLAEGAGKQAGTDLEQEILCEAAEIEALLDAGGISSSFRSHRRNARNVLGALLSMLAAGKLDT ESPERLQLLQRAASGWSEALTRRLQELAAGLERDPGPEWCGKAKALAAETTLHLPLLGRALYHLTGTLEVALASHADDGA NEATLHLIRHRDWQQAGRAAFRGGIVIAVVGLVWSLTGWSKGPLMLMALSIMISIFSSKEHPARFVGLIFIGAATGSTLA VFCRLVLLHGVGDFAVTAAVIAPFILLGAYAMQHRRTVIPATDATLFFIFVIQPGVSVTVAANDLAIGAVAMVLGVASAW MGYTFLVPVNPALRMRSLLAAMAKDIAQMSAQANRGSRVRIRGKLQHRVIRLVALARNFDITPAAAVSGAIGVLALTATI ERLREKLEYEELSPESARQLRETLDRIACMAQTPALESRLLQGWADDLSAVLKPLPPTEDRVGATDEGAAMGAVMVPAS
Specific function: Unknown
COG id: COG1289
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aromatic acid exporter ArAE (TC 2.A.85) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006726 [H]
Pfam domain/function: PF04632 FUSC [H]
EC number: NA
Molecular weight: Translated: 67859; Mature: 67859
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQWPRLLPALRATAAALAALVVAHLLRLENPYWAAMTALIVVQPTRTLLFEKSYYRLVGT CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEECCHHHHHHHHHHHHHHHH AIGSAAAWLLLLQTTSPLALTAALSIWIAACVGIGNLLHGLRSYAALMAACTCAVIAMSG HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC YQNPGHLGGMAFGRVACIIVGILVTTCVTALFTPSHSMDELGDRLNKVAADAVRWLAQLA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH EGAGKQAGTDLEQEILCEAAEIEALLDAGGISSSFRSHRRNARNVLGALLSMLAAGKLDT HCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC ESPERLQLLQRAASGWSEALTRRLQELAAGLERDPGPEWCGKAKALAAETTLHLPLLGRA CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHH LYHLTGTLEVALASHADDGANEATLHLIRHRDWQQAGRAAFRGGIVIAVVGLVWSLTGWS HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCC KGPLMLMALSIMISIFSSKEHPARFVGLIFIGAATGSTLAVFCRLVLLHGVGDFAVTAAV CCHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHCCCHHHHHHHH IAPFILLGAYAMQHRRTVIPATDATLFFIFVIQPGVSVTVAANDLAIGAVAMVLGVASAW HHHHHHHHHHHHHHCCEECCCCCCCEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHH MGYTFLVPVNPALRMRSLLAAMAKDIAQMSAQANRGSRVRIRGKLQHRVIRLVALARNFD HCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCC ITPAAAVSGAIGVLALTATIERLREKLEYEELSPESARQLRETLDRIACMAQTPALESRL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHH LQGWADDLSAVLKPLPPTEDRVGATDEGAAMGAVMVPAS HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCC >Mature Secondary Structure MQWPRLLPALRATAAALAALVVAHLLRLENPYWAAMTALIVVQPTRTLLFEKSYYRLVGT CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEECCHHHHHHHHHHHHHHHH AIGSAAAWLLLLQTTSPLALTAALSIWIAACVGIGNLLHGLRSYAALMAACTCAVIAMSG HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC YQNPGHLGGMAFGRVACIIVGILVTTCVTALFTPSHSMDELGDRLNKVAADAVRWLAQLA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH EGAGKQAGTDLEQEILCEAAEIEALLDAGGISSSFRSHRRNARNVLGALLSMLAAGKLDT HCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC ESPERLQLLQRAASGWSEALTRRLQELAAGLERDPGPEWCGKAKALAAETTLHLPLLGRA CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHH LYHLTGTLEVALASHADDGANEATLHLIRHRDWQQAGRAAFRGGIVIAVVGLVWSLTGWS HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCC KGPLMLMALSIMISIFSSKEHPARFVGLIFIGAATGSTLAVFCRLVLLHGVGDFAVTAAV CCHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHCCCHHHHHHHH IAPFILLGAYAMQHRRTVIPATDATLFFIFVIQPGVSVTVAANDLAIGAVAMVLGVASAW HHHHHHHHHHHHHHCCEECCCCCCCEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHH MGYTFLVPVNPALRMRSLLAAMAKDIAQMSAQANRGSRVRIRGKLQHRVIRLVALARNFD HCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCC ITPAAAVSGAIGVLALTATIERLREKLEYEELSPESARQLRETLDRIACMAQTPALESRL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHH LQGWADDLSAVLKPLPPTEDRVGATDEGAAMGAVMVPAS HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9055427 [H]