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The map label for this gene is slyA [H]

Identifier: 197118740

GI number: 197118740

Start: 2736455

End: 2736916

Strand: Direct

Name: slyA [H]

Synonym: Gbem_2359

Alternate gene names: 197118740

Gene position: 2736455-2736916 (Clockwise)

Preceding gene: 308535300

Following gene: 197118741

Centisome position: 59.29

GC content: 58.23

Gene sequence:

>462_bases
ATGAGCTATTCACGAAATAAGATCGCTAAGAACAATCTCCTTTTCCACATTGGCTTACTCACCCGGCACTGGCGCAAAGT
CCTGGATGTGGAATTCCAGAACTGCGGCTTGACGGAGGCCACCTGGCGGCCGCTTTTGCACCTAAGTCACCTGGGCGACG
GCATTCGCCAGAAGGATCTCGCGGCCTCGGTCGGCATCGAGGGGCCATCCATGGTCCGACTCGTTGAGACCTTGATTGCG
AAAGGTCTGGTGGACAGGGCCGAGGACAGCACCGACCGCCGGGCGAAACTGCTCTCGCTGACCGACAAGGGGCATTCCAT
GGTCGCGCGCATCAGGGAGACCGTGCTGCTTCGCGAGGAGCAACTGCTGAACATCTTTACCGAAGATGAGGTGGAGCAAC
TGGCCGGTTTCATGGAAAGGCTCGAGTCGGCGGTGACAGATGCCAGACGGAAAGGAAGATGA

Upstream 100 bases:

>100_bases
GACTCCGGCAAATCAAGCCCATATCTCCTGAGTCCCCGCCCCTCAAGCACCATCCAAAAATAGGTAGAATTAAAATAGAT
AGTATGCTACCTATTATGAT

Downstream 100 bases:

>100_bases
TGCAGTGGCCTAGACTGCTCCCCGCTCTCAGAGCAACCGCCGCCGCACTCGCCGCGCTGGTAGTCGCCCATCTGCTCCGC
CTGGAAAACCCCTACTGGGC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MSYSRNKIAKNNLLFHIGLLTRHWRKVLDVEFQNCGLTEATWRPLLHLSHLGDGIRQKDLAASVGIEGPSMVRLVETLIA
KGLVDRAEDSTDRRAKLLSLTDKGHSMVARIRETVLLREEQLLNIFTEDEVEQLAGFMERLESAVTDARRKGR

Sequences:

>Translated_153_residues
MSYSRNKIAKNNLLFHIGLLTRHWRKVLDVEFQNCGLTEATWRPLLHLSHLGDGIRQKDLAASVGIEGPSMVRLVETLIA
KGLVDRAEDSTDRRAKLLSLTDKGHSMVARIRETVLLREEQLLNIFTEDEVEQLAGFMERLESAVTDARRKGR
>Mature_152_residues
SYSRNKIAKNNLLFHIGLLTRHWRKVLDVEFQNCGLTEATWRPLLHLSHLGDGIRQKDLAASVGIEGPSMVRLVETLIAK
GLVDRAEDSTDRRAKLLSLTDKGHSMVARIRETVLLREEQLLNIFTEDEVEQLAGFMERLESAVTDARRKGR

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=133, Percent_Identity=31.5789473684211, Blast_Score=77, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17404; Mature: 17273

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYSRNKIAKNNLLFHIGLLTRHWRKVLDVEFQNCGLTEATWRPLLHLSHLGDGIRQKDL
CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
AASVGIEGPSMVRLVETLIAKGLVDRAEDSTDRRAKLLSLTDKGHSMVARIRETVLLREE
HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
QLLNIFTEDEVEQLAGFMERLESAVTDARRKGR
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SYSRNKIAKNNLLFHIGLLTRHWRKVLDVEFQNCGLTEATWRPLLHLSHLGDGIRQKDL
CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
AASVGIEGPSMVRLVETLIAKGLVDRAEDSTDRRAKLLSLTDKGHSMVARIRETVLLREE
HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
QLLNIFTEDEVEQLAGFMERLESAVTDARRKGR
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA