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The map label for this gene is yrvM [H]

Identifier: 197118579

GI number: 197118579

Start: 2557811

End: 2558587

Strand: Reverse

Name: yrvM [H]

Synonym: Gbem_2198

Alternate gene names: 197118579

Gene position: 2558587-2557811 (Counterclockwise)

Preceding gene: 197118580

Following gene: 197118577

Centisome position: 55.44

GC content: 61.65

Gene sequence:

>777_bases
ATGTCGAATCTGCACCGTTTTTCCCGCACCGAACTCCTTATCGGCCCCCAGGGCCTCAACAAGCTCGCCGAATCCACCGT
CGCCATCTTCGGGCTGGGCGGGGTAGGCAGTTACGCAGCCGAGGCACTCTGCCGGGCAGGCGTGGGCCGCCTGGTCATCG
TCGACTTCGACGAGATCTGCCTCACCAACGTGAACCGACAGCTGCACGCCATGGACGGAACCGTCGGCAAGGCCAAGGCC
CAGGTCATGGCCGAGCGCATGCGCCAGATCAACCCCAAGGCCGAGATCGTCCCCTACCAGGATTTCTACTCCGCCGAGAA
CAGCGACTTCCTCCTTGCCGACGGCTACGATTACGTCGTCGACGCCATCGACCATATCACCAGCAAACTGCACCTGATCC
GCACCTGCCGGGAGCGCAACATCCCCATCATCTCCAGTATGGGTGCCGCGGCGAAGCTCGATCCGACCAAGATCGGGGTG
GCCGACATCTCCCAGACCAACAAGTGCCGCATGGCGCGCTCGGTAAGGAAACTCTTGAAGAAGCAGGGGATCGAGACCGG
CGTGAAGGTGGTTTTTTCCACCGAGGAGTACCGCGAGCAGCTGATAAAAGACGGCGGCTGCAAGGGGAACTGCATCTGCC
CCAACAAGGACGAACAGAAGTTCTCCTGCGAGCACCGCCGCGTCATCCTGGGTAGCGTATCCTTCATCCCCTCCATCTTC
GGACTCACCATGGCAGGCGTCGTGGTGAACGACCTTCTGGCGGGAACGGCGAGCTAG

Upstream 100 bases:

>100_bases
CTTCCAACTTTCGACCCACCTATGCGATACTTTGCCAGTCGCGTGGCCCACAGCCGGGGGCCGTCGGATCAAATACGCAA
GCTTCAAGGGCAAAGTAAAC

Downstream 100 bases:

>100_bases
CGGCAGCAATCGTGAATGTAAAACAAATGCCCGAGGGGGCGGTTCCTCTCGGGCATTTCGTTTATTGCAGCTTAAAGGTA
GGTGACGCCTTCATCCGCAC

Product: YgdL family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSNLHRFSRTELLIGPQGLNKLAESTVAIFGLGGVGSYAAEALCRAGVGRLVIVDFDEICLTNVNRQLHAMDGTVGKAKA
QVMAERMRQINPKAEIVPYQDFYSAENSDFLLADGYDYVVDAIDHITSKLHLIRTCRERNIPIISSMGAAAKLDPTKIGV
ADISQTNKCRMARSVRKLLKKQGIETGVKVVFSTEEYREQLIKDGGCKGNCICPNKDEQKFSCEHRRVILGSVSFIPSIF
GLTMAGVVVNDLLAGTAS

Sequences:

>Translated_258_residues
MSNLHRFSRTELLIGPQGLNKLAESTVAIFGLGGVGSYAAEALCRAGVGRLVIVDFDEICLTNVNRQLHAMDGTVGKAKA
QVMAERMRQINPKAEIVPYQDFYSAENSDFLLADGYDYVVDAIDHITSKLHLIRTCRERNIPIISSMGAAAKLDPTKIGV
ADISQTNKCRMARSVRKLLKKQGIETGVKVVFSTEEYREQLIKDGGCKGNCICPNKDEQKFSCEHRRVILGSVSFIPSIF
GLTMAGVVVNDLLAGTAS
>Mature_257_residues
SNLHRFSRTELLIGPQGLNKLAESTVAIFGLGGVGSYAAEALCRAGVGRLVIVDFDEICLTNVNRQLHAMDGTVGKAKAQ
VMAERMRQINPKAEIVPYQDFYSAENSDFLLADGYDYVVDAIDHITSKLHLIRTCRERNIPIISSMGAAAKLDPTKIGVA
DISQTNKCRMARSVRKLLKKQGIETGVKVVFSTEEYREQLIKDGGCKGNCICPNKDEQKFSCEHRRVILGSVSFIPSIFG
LTMAGVVVNDLLAGTAS

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Homo sapiens, GI7657339, Length=144, Percent_Identity=34.7222222222222, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4885649, Length=127, Percent_Identity=32.2834645669291, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI1789177, Length=198, Percent_Identity=42.9292929292929, Blast_Score=171, Evalue=3e-44,
Organism=Escherichia coli, GI1787048, Length=151, Percent_Identity=33.7748344370861, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082356, Length=146, Percent_Identity=34.2465753424658, Blast_Score=82, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17540406, Length=151, Percent_Identity=32.4503311258278, Blast_Score=75, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6321790, Length=251, Percent_Identity=33.0677290836653, Blast_Score=141, Evalue=8e-35,
Organism=Saccharomyces cerevisiae, GI6322825, Length=222, Percent_Identity=35.1351351351351, Blast_Score=128, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24582879, Length=154, Percent_Identity=34.4155844155844, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24660640, Length=132, Percent_Identity=32.5757575757576, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 28155; Mature: 28024

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLHRFSRTELLIGPQGLNKLAESTVAIFGLGGVGSYAAEALCRAGVGRLVIVDFDEIC
CCCCHHHCCCEEEECHHHHHHHHHHHEEEEECCCCHHHHHHHHHHCCCCEEEEEECHHHH
LTNVNRQLHAMDGTVGKAKAQVMAERMRQINPKAEIVPYQDFYSAENSDFLLADGYDYVV
HHHCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCCEEEECCHHHHH
DAIDHITSKLHLIRTCRERNIPIISSMGAAAKLDPTKIGVADISQTNKCRMARSVRKLLK
HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHH
KQGIETGVKVVFSTEEYREQLIKDGGCKGNCICPNKDEQKFSCEHRRVILGSVSFIPSIF
HCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHEEHHHHHHHHHH
GLTMAGVVVNDLLAGTAS
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SNLHRFSRTELLIGPQGLNKLAESTVAIFGLGGVGSYAAEALCRAGVGRLVIVDFDEIC
CCCHHHCCCEEEECHHHHHHHHHHHEEEEECCCCHHHHHHHHHHCCCCEEEEEECHHHH
LTNVNRQLHAMDGTVGKAKAQVMAERMRQINPKAEIVPYQDFYSAENSDFLLADGYDYVV
HHHCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCCEEEECCHHHHH
DAIDHITSKLHLIRTCRERNIPIISSMGAAAKLDPTKIGVADISQTNKCRMARSVRKLLK
HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHH
KQGIETGVKVVFSTEEYREQLIKDGGCKGNCICPNKDEQKFSCEHRRVILGSVSFIPSIF
HCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHEEHHHHHHHHHH
GLTMAGVVVNDLLAGTAS
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]