| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is cph2 [H]
Identifier: 197118430
GI number: 197118430
Start: 2358281
End: 2360395
Strand: Reverse
Name: cph2 [H]
Synonym: Gbem_2048
Alternate gene names: 197118430
Gene position: 2360395-2358281 (Counterclockwise)
Preceding gene: 197118432
Following gene: 197118429
Centisome position: 51.14
GC content: 62.55
Gene sequence:
>2115_bases ATGTTCGAGGATCTGCTGGCGGGGCTTAAGAGCCTTCCCGCGCTGGCGCCCTACAGCCTTACCCTTTATTGCCGCACGCC ATCTCGCGGAGAATTCGAGAACTGTTATTCCCTTGTAGAAGACGCGCTTTGCAGGGACGTGGCGCGGCAGTTTTTCGAAC CCAACATGGAGGTGTACTTCCAGGAGGGAACCACCTCGGTCTGTCGCTACGGCGGCGGCTTCTTCGGCTTTGCCATCCCA TTCCGGATCTGGAGCGACGAATTCTGCCTGGTGGGAGACGGGGTGAGGGACGATTCCATCGACCTCTGGCAGCTTGCCGC CTTGGCCCGCTCCGGCGGCGGCGAAGTCTTTTCGCTGTTTCCTTACGTGGAATCGCTTTGCACCGCTTCTCTTGCCGATG TCGAGCAGGTAGCCCACGAGGTCGCCGAGGAAGTCGCAAAGCTGGTGGAAAAACTCTCCCTGGCGCCGCAGACTCCCGCC CTACCCCCCTCCTCCCCCTCAGCCGCCGGCGAACCGGGCGAGGAACATTGCGACCCAAGGCTTGACGTCGTGGCCCGCTC GCTGGAGGAGCTCGACCTTGCCAAAACGGTAACCGAGACGATCGGGCTTTGCTGCGAAACCCTGGTCACCCATTTCAACT CACCCAAAACCGCCATAGCGCTCAGGGACGCCTCCGGCACCTCCTTCCAGGTCAGCGGAATCTGGGGACTCCCCGAAGAT CTCGGCAGCATCCCCGCCGACGCCATGCACCTCTTCATGGCGAAAGACCGCCGGGCGAAGACGGTGCTCTTCGACGCGCA GATGCGCGGAGTGCTCCCCGCTCTGCAGGCGACCGTCTGCACCTGTTTCCCGCTGCGCTGCCAGGACGAGCGGCTGGGGT TTCTGGCCCTGTTCGACGTCGCCCCCGCGAAAAGCGATGCCCTGCTCATCTCCATGCTCGCCGGCGCGACGGCCGCAAAG CTTTCACGCATCATCAAGGATGCGGAGCAATCCAAGGAGAACGCCCTGTCCCAGCGGCTCATGTCGCTGACCAACACGCT GCTGCAGGTGGACAGCAAGGACGAGCTTTACCAAGCCATCCTCGAGATCGCCGCAGAACTGATCGACGCAATGCAAGGGT CCGTCATGCTGATCGACAAGGACGGGCAGAACATGCACATCGTCTTCACGCTCGGCATGACCCTCAACATCGCGCGCTGC CTCCCGGTCAAGGTAGGCAAGGGCATAGCGGGAATGGTGGCGCAGTCGGGCCAGCCCCTGCTGGTCAACGACGTGGAGAA GGACAGCCGGGTCGCCATGGCCAACAGGCTCCGCTTCAAGTCGAAATCGCTCATCTGCATGCCGCTCAAGCTCAAAGACA AGATCATCGGCGTCTTGAACCTCTCCGACAAGAAGAACCTCGCCCCCTTCACCGACGCAGACCTGCAGGTGCTCACCTCC TTCGCCAACCTGGCCTCGCTGATGATCGAGCGGACCGAGGTGCTGGAGGAATCCGAGCGTTTCGAGCAGCTTTCGGTCAC CGATGCGCTCACCGGCCTTTACAACCGCCGCTTCCTGAAGAACCGGCTCGAGGAGGAACTGAACCGAAGCATACGCCAGG GACTGAACCTCACCGTCATCTTCATCGACCTCGACTTCTTCAAAAACTACAACGACCTCTGCGGGCACCTGGCCGGAGAC GACGCCCTGAGGACCACGGCGGAAATAATCAAGGCCTCGCTACGCGACATGGACATCGTGGCCCGCTACGGCGGCGAGGA GTTCTGCGCGGTGCTCCCGGGAACCTCGAAGGTGGAGGCGATGATCGTCGCCGAGCGGATCAGGTCGGAGATAGAGAGGG AAATTTTTCCCGGCGAAAGCGAGATCCCGCAGGTCCGCCTCACCGCGAGCCTCGGGGTCGCCTCGTTCCCCGAAGACGGC CGCACCTTCACCGCCCTGGTGCACGCCTCCGACGTCGCCTTGTACGAGGCGAAGGCCGGCGGCCGCAACCGCATTGTCGC CGCCCGCACCTCCCCCGGGCAAAAAGAGACGCCGATCCCCGCCACTCCCCCCAAAACGTCTAAGACCCTCGACTTCAACG CCTATCTGGAAGCCTCGGTGGGTGCTAAAGGATAG
Upstream 100 bases:
>100_bases CTTGCTGGATGAACTCCGCGCACGAGGCCTGTTGGCCGCTATTTGACGTATCATTTTCAAAGTGGGAGCCATGGCTGTGG GAAAAGGACCGGACAAAAAA
Downstream 100 bases:
>100_bases CGCCCTGCAGCACCTGCATTTCCCTGCTTTTTTCTCAACAAACCCATGCTAAAACAGAAAGATACTGCATGATGCCGGTC TTTTTCTTTTGTAGTGAAAA
Product: GAF domain-containing sensor diguanylate cyclase
Products: NA
Alternate protein names: Bacteriophytochrome cph2 [H]
Number of amino acids: Translated: 704; Mature: 704
Protein sequence:
>704_residues MFEDLLAGLKSLPALAPYSLTLYCRTPSRGEFENCYSLVEDALCRDVARQFFEPNMEVYFQEGTTSVCRYGGGFFGFAIP FRIWSDEFCLVGDGVRDDSIDLWQLAALARSGGGEVFSLFPYVESLCTASLADVEQVAHEVAEEVAKLVEKLSLAPQTPA LPPSSPSAAGEPGEEHCDPRLDVVARSLEELDLAKTVTETIGLCCETLVTHFNSPKTAIALRDASGTSFQVSGIWGLPED LGSIPADAMHLFMAKDRRAKTVLFDAQMRGVLPALQATVCTCFPLRCQDERLGFLALFDVAPAKSDALLISMLAGATAAK LSRIIKDAEQSKENALSQRLMSLTNTLLQVDSKDELYQAILEIAAELIDAMQGSVMLIDKDGQNMHIVFTLGMTLNIARC LPVKVGKGIAGMVAQSGQPLLVNDVEKDSRVAMANRLRFKSKSLICMPLKLKDKIIGVLNLSDKKNLAPFTDADLQVLTS FANLASLMIERTEVLEESERFEQLSVTDALTGLYNRRFLKNRLEEELNRSIRQGLNLTVIFIDLDFFKNYNDLCGHLAGD DALRTTAEIIKASLRDMDIVARYGGEEFCAVLPGTSKVEAMIVAERIRSEIEREIFPGESEIPQVRLTASLGVASFPEDG RTFTALVHASDVALYEAKAGGRNRIVAARTSPGQKETPIPATPPKTSKTLDFNAYLEASVGAKG
Sequences:
>Translated_704_residues MFEDLLAGLKSLPALAPYSLTLYCRTPSRGEFENCYSLVEDALCRDVARQFFEPNMEVYFQEGTTSVCRYGGGFFGFAIP FRIWSDEFCLVGDGVRDDSIDLWQLAALARSGGGEVFSLFPYVESLCTASLADVEQVAHEVAEEVAKLVEKLSLAPQTPA LPPSSPSAAGEPGEEHCDPRLDVVARSLEELDLAKTVTETIGLCCETLVTHFNSPKTAIALRDASGTSFQVSGIWGLPED LGSIPADAMHLFMAKDRRAKTVLFDAQMRGVLPALQATVCTCFPLRCQDERLGFLALFDVAPAKSDALLISMLAGATAAK LSRIIKDAEQSKENALSQRLMSLTNTLLQVDSKDELYQAILEIAAELIDAMQGSVMLIDKDGQNMHIVFTLGMTLNIARC LPVKVGKGIAGMVAQSGQPLLVNDVEKDSRVAMANRLRFKSKSLICMPLKLKDKIIGVLNLSDKKNLAPFTDADLQVLTS FANLASLMIERTEVLEESERFEQLSVTDALTGLYNRRFLKNRLEEELNRSIRQGLNLTVIFIDLDFFKNYNDLCGHLAGD DALRTTAEIIKASLRDMDIVARYGGEEFCAVLPGTSKVEAMIVAERIRSEIEREIFPGESEIPQVRLTASLGVASFPEDG RTFTALVHASDVALYEAKAGGRNRIVAARTSPGQKETPIPATPPKTSKTLDFNAYLEASVGAKG >Mature_704_residues MFEDLLAGLKSLPALAPYSLTLYCRTPSRGEFENCYSLVEDALCRDVARQFFEPNMEVYFQEGTTSVCRYGGGFFGFAIP FRIWSDEFCLVGDGVRDDSIDLWQLAALARSGGGEVFSLFPYVESLCTASLADVEQVAHEVAEEVAKLVEKLSLAPQTPA LPPSSPSAAGEPGEEHCDPRLDVVARSLEELDLAKTVTETIGLCCETLVTHFNSPKTAIALRDASGTSFQVSGIWGLPED LGSIPADAMHLFMAKDRRAKTVLFDAQMRGVLPALQATVCTCFPLRCQDERLGFLALFDVAPAKSDALLISMLAGATAAK LSRIIKDAEQSKENALSQRLMSLTNTLLQVDSKDELYQAILEIAAELIDAMQGSVMLIDKDGQNMHIVFTLGMTLNIARC LPVKVGKGIAGMVAQSGQPLLVNDVEKDSRVAMANRLRFKSKSLICMPLKLKDKIIGVLNLSDKKNLAPFTDADLQVLTS FANLASLMIERTEVLEESERFEQLSVTDALTGLYNRRFLKNRLEEELNRSIRQGLNLTVIFIDLDFFKNYNDLCGHLAGD DALRTTAEIIKASLRDMDIVARYGGEEFCAVLPGTSKVEAMIVAERIRSEIEREIFPGESEIPQVRLTASLGVASFPEDG RTFTALVHASDVALYEAKAGGRNRIVAARTSPGQKETPIPATPPKTSKTLDFNAYLEASVGAKG
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG3706
COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 GGDEF domains [H]
Homologues:
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=33.5260115606936, Blast_Score=116, Evalue=4e-27, Organism=Escherichia coli, GI87082007, Length=185, Percent_Identity=42.7027027027027, Blast_Score=115, Evalue=9e-27, Organism=Escherichia coli, GI145693134, Length=192, Percent_Identity=37.5, Blast_Score=109, Evalue=5e-25, Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=37.2881355932203, Blast_Score=99, Evalue=6e-22, Organism=Escherichia coli, GI1787802, Length=166, Percent_Identity=36.144578313253, Blast_Score=99, Evalue=8e-22, Organism=Escherichia coli, GI1788085, Length=175, Percent_Identity=32.5714285714286, Blast_Score=99, Evalue=1e-21, Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=37.4233128834356, Blast_Score=97, Evalue=3e-21, Organism=Escherichia coli, GI1787541, Length=179, Percent_Identity=34.0782122905028, Blast_Score=97, Evalue=4e-21, Organism=Escherichia coli, GI1788381, Length=192, Percent_Identity=34.375, Blast_Score=96, Evalue=6e-21, Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=36.6459627329193, Blast_Score=89, Evalue=9e-19, Organism=Escherichia coli, GI87081974, Length=160, Percent_Identity=34.375, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI87081977, Length=212, Percent_Identity=28.3018867924528, Blast_Score=78, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR003018 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 [H]
Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]
EC number: NA
Molecular weight: Translated: 76842; Mature: 76842
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: PS50887 GGDEF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFEDLLAGLKSLPALAPYSLTLYCRTPSRGEFENCYSLVEDALCRDVARQFFEPNMEVYF CHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE QEGTTSVCRYGGGFFGFAIPFRIWSDEFCLVGDGVRDDSIDLWQLAALARSGGGEVFSLF ECCCHHHHHCCCCCEEHEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEHH PYVESLCTASLADVEQVAHEVAEEVAKLVEKLSLAPQTPALPPSSPSAAGEPGEEHCDPR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCH LDVVARSLEELDLAKTVTETIGLCCETLVTHFNSPKTAIALRDASGTSFQVSGIWGLPED HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCHH LGSIPADAMHLFMAKDRRAKTVLFDAQMRGVLPALQATVCTCFPLRCQDERLGFLALFDV HHCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC APAKSDALLISMLAGATAAKLSRIIKDAEQSKENALSQRLMSLTNTLLQVDSKDELYQAI CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LEIAAELIDAMQGSVMLIDKDGQNMHIVFTLGMTLNIARCLPVKVGKGIAGMVAQSGQPL HHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCHHHHHHHCCHHHCCCHHHHHHCCCCCE LVNDVEKDSRVAMANRLRFKSKSLICMPLKLKDKIIGVLNLSDKKNLAPFTDADLQVLTS EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHH FANLASLMIERTEVLEESERFEQLSVTDALTGLYNRRFLKNRLEEELNRSIRQGLNLTVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE FIDLDFFKNYNDLCGHLAGDDALRTTAEIIKASLRDMDIVARYGGEEFCAVLPGTSKVEA EEEEHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHH MIVAERIRSEIEREIFPGESEIPQVRLTASLGVASFPEDGRTFTALVHASDVALYEAKAG HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEEECCC GRNRIVAARTSPGQKETPIPATPPKTSKTLDFNAYLEASVGAKG CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC >Mature Secondary Structure MFEDLLAGLKSLPALAPYSLTLYCRTPSRGEFENCYSLVEDALCRDVARQFFEPNMEVYF CHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE QEGTTSVCRYGGGFFGFAIPFRIWSDEFCLVGDGVRDDSIDLWQLAALARSGGGEVFSLF ECCCHHHHHCCCCCEEHEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEHH PYVESLCTASLADVEQVAHEVAEEVAKLVEKLSLAPQTPALPPSSPSAAGEPGEEHCDPR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCH LDVVARSLEELDLAKTVTETIGLCCETLVTHFNSPKTAIALRDASGTSFQVSGIWGLPED HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCHH LGSIPADAMHLFMAKDRRAKTVLFDAQMRGVLPALQATVCTCFPLRCQDERLGFLALFDV HHCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC APAKSDALLISMLAGATAAKLSRIIKDAEQSKENALSQRLMSLTNTLLQVDSKDELYQAI CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LEIAAELIDAMQGSVMLIDKDGQNMHIVFTLGMTLNIARCLPVKVGKGIAGMVAQSGQPL HHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCHHHHHHHCCHHHCCCHHHHHHCCCCCE LVNDVEKDSRVAMANRLRFKSKSLICMPLKLKDKIIGVLNLSDKKNLAPFTDADLQVLTS EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHH FANLASLMIERTEVLEESERFEQLSVTDALTGLYNRRFLKNRLEEELNRSIRQGLNLTVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE FIDLDFFKNYNDLCGHLAGDDALRTTAEIIKASLRDMDIVARYGGEEFCAVLPGTSKVEA EEEEHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHH MIVAERIRSEIEREIFPGESEIPQVRLTASLGVASFPEDGRTFTALVHASDVALYEAKAG HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEEECCC GRNRIVAARTSPGQKETPIPATPPKTSKTLDFNAYLEASVGAKG CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231; 10978170; 11063585 [H]