| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118391
Identifier: 197118391
GI number: 197118391
Start: 2313664
End: 2314290
Strand: Direct
Name: 197118391
Synonym: Gbem_2009
Alternate gene names: NA
Gene position: 2313664-2314290 (Clockwise)
Preceding gene: 197118390
Following gene: 197118392
Centisome position: 50.13
GC content: 55.66
Gene sequence:
>627_bases ATGGACTCTATCTCCAATTTATCCGATGCCCAAGTTGTCCCATTAACGACGCAGCTGATGACTGTGCTCACCAAGAACCC TTCTTTGTATGGTAGGGTGATGGGGGTCTACCCGACCTTGGAGGAACTCAAGTATCTGCACGAGAACCACATCGCCACCC TCAACGACCCGAGCAGCGGAGAGCCCGAGAAGGTGATGGAACACCAAGCGAAGCGGCAGTTGCTCAACCGGAAGTTTGGT GCATTCCACTCGGCGGTAAAGCTGGCCGCCACAGACGACCCGAGCCTGCTTGCCACCTTCGGCCTCAGCCAACCCAAGGC GAAAAAATCAGCTTCCCCCGCGACCGTGAGCAGATCCGAAAAGTTGAAAGCTGTCCACGGGGACATCTCAGGTGAGATAT TCCTGAAAGGTGTCCCCATCAAATACGCGAGGAGCTATGACATCGACTATTGCGAAGGGGATCCGTCTCTTGAAGAGAGT TGGAAGCATCACAGCGTGGTGGCCCACGCATCGAAAATGAAGGTGACGGGCCTGACACCTGGGAGGGTCTACTGGTTCCG GGTAAGAGGGATCGGAGCAAACGGCCCCGGTCCGTGGTCACCGTACGCGTCATTGATGGCAATTTAA
Upstream 100 bases:
>100_bases GTGTGCTATGCCTGTATTGCCTTTCATGTTTTTTTCGATTCCTTCTTGCACCGGCAACAGTTGCTGCTAAGATCATTGGA AATCTCTAAAGGAGGAGCGC
Downstream 100 bases:
>100_bases GCTTAAAGATGTTACCGATCCCCTGGCAGGTTCCAAGCCTCCAGGGGATATCTTCGCAGTTCCCCTCACCAGAGATCCTT TCTCACCCAAATCAGTTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MDSISNLSDAQVVPLTTQLMTVLTKNPSLYGRVMGVYPTLEELKYLHENHIATLNDPSSGEPEKVMEHQAKRQLLNRKFG AFHSAVKLAATDDPSLLATFGLSQPKAKKSASPATVSRSEKLKAVHGDISGEIFLKGVPIKYARSYDIDYCEGDPSLEES WKHHSVVAHASKMKVTGLTPGRVYWFRVRGIGANGPGPWSPYASLMAI
Sequences:
>Translated_208_residues MDSISNLSDAQVVPLTTQLMTVLTKNPSLYGRVMGVYPTLEELKYLHENHIATLNDPSSGEPEKVMEHQAKRQLLNRKFG AFHSAVKLAATDDPSLLATFGLSQPKAKKSASPATVSRSEKLKAVHGDISGEIFLKGVPIKYARSYDIDYCEGDPSLEES WKHHSVVAHASKMKVTGLTPGRVYWFRVRGIGANGPGPWSPYASLMAI >Mature_208_residues MDSISNLSDAQVVPLTTQLMTVLTKNPSLYGRVMGVYPTLEELKYLHENHIATLNDPSSGEPEKVMEHQAKRQLLNRKFG AFHSAVKLAATDDPSLLATFGLSQPKAKKSASPATVSRSEKLKAVHGDISGEIFLKGVPIKYARSYDIDYCEGDPSLEES WKHHSVVAHASKMKVTGLTPGRVYWFRVRGIGANGPGPWSPYASLMAI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22778; Mature: 22778
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: PS50853 FN3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSISNLSDAQVVPLTTQLMTVLTKNPSLYGRVMGVYPTLEELKYLHENHIATLNDPSSG CCCCCCCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCEEECCCCCCC EPEKVMEHQAKRQLLNRKFGAFHSAVKLAATDDPSLLATFGLSQPKAKKSASPATVSRSE CHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCHHH KLKAVHGDISGEIFLKGVPIKYARSYDIDYCEGDPSLEESWKHHSVVAHASKMKVTGLTP HHHHHCCCCCCEEEEECCCEEEECCCCCEECCCCCCHHHHHHHHHHHHHHCCEEEECCCC GRVYWFRVRGIGANGPGPWSPYASLMAI CEEEEEEEEEECCCCCCCCCCHHHHHCC >Mature Secondary Structure MDSISNLSDAQVVPLTTQLMTVLTKNPSLYGRVMGVYPTLEELKYLHENHIATLNDPSSG CCCCCCCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCEEECCCCCCC EPEKVMEHQAKRQLLNRKFGAFHSAVKLAATDDPSLLATFGLSQPKAKKSASPATVSRSE CHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCHHH KLKAVHGDISGEIFLKGVPIKYARSYDIDYCEGDPSLEESWKHHSVVAHASKMKVTGLTP HHHHHCCCCCCEEEEECCCEEEECCCCCEECCCCCCHHHHHHHHHHHHHHCCEEEECCCC GRVYWFRVRGIGANGPGPWSPYASLMAI CEEEEEEEEEECCCCCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA