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The map label for this gene is rarD [C]

Identifier: 197118333

GI number: 197118333

Start: 2253450

End: 2254373

Strand: Direct

Name: rarD [C]

Synonym: Gbem_1950

Alternate gene names: 197118333

Gene position: 2253450-2254373 (Clockwise)

Preceding gene: 197118332

Following gene: 197118335

Centisome position: 48.83

GC content: 59.85

Gene sequence:

>924_bases
ATGACCAAACCTGCCGACACTTCCGAACTGGCTGCGACCGAGGCGCGGCGCCTAGGCGTCATCTACGGCCTTGCCGCATA
CCTTTGCTGGGGCTTTTTCCCGCTCTACTTCAAATCGGTCAAGGTCGTGCCGCCGCTTGAGATGGTGTCGCACCGGATAG
TCTGGTCGCTTGCTTTCCTGCTTTTGCTCATCACCTGGAAAAAGGCGTGGCGGAGCATGCTGGAGCTCCTTACGCTTCCC
AAATCGTTGGCGGTGCTCTTTGCTACCACCTTGCTCATAGCCACCAACTGGTTGGTCTTCATCTACGCCATCAGCGTGGG
GGAGGTGCTGCAGTCGAGCCTTGGCTATTTCATCAACCCGCTGGTGAGCGTGCTGCTGGGGTTTTTGTTCCTGCGCGAGA
GGCTGGAGCGTCCGCAATGGATCAGCTTGGCGCTCGCCGTTGCCGGCGTCCTTTACCTGGCCATCGAGTACGGCAGCATG
CCCTGGATCGCCCTGGCGCTGGCGCTTTCTTTCGGGCTTTACGGCCTGATCCGCAAGGCGCTTCATGTGGAGCCTTTGGT
CGGGCTCACCGTCGAGACGCTCTTGCTCGCACCTTTCGCGCTGTACTACCTGGTTCACCTGAACCAAACCGGCGCCGGGG
TTTTCCTGACCCATTCCACCCGTCTGGACCTGCTCATTCCCATGTCCGGTATCGTCACCGCCATACCGCTTCTGCTCTTT
GCCGCCGCTGCCAAGAAACTGCGGCTGGCTACTATCGGGTTTTTGCAGTACATCACCCCCACCATGCACTTCCTCCTCGC
CATCACCATCTTCGGCGAGACCTTTACCCATACGCACCTGGTGAGCTTCCTCTTCATCTGGAGCGGCCTGGCCCTGTACT
CGTGGCACGCCTATCGCTTCGTCACGCGGCAGCAGGTGCGGTAA

Upstream 100 bases:

>100_bases
GCGCCCATCACCATCGGCGTCATCCTGCTGCGCGGATTGAAGATCATATAGCTACTTCGCGCCCCCTCCCGCAGGGGGCG
CTAACTTACCGGAACCCGAT

Downstream 100 bases:

>100_bases
AGCGTAGGCTCCGGTTCCCAAGGTGGACTTTGGGAACCGGATGGACTTGATGGACTTGATGGACCTGATGGACCTGATGG
ACCTGATGGACCTGATGGAC

Product: RarD protein, DMT superfamily transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MTKPADTSELAATEARRLGVIYGLAAYLCWGFFPLYFKSVKVVPPLEMVSHRIVWSLAFLLLLITWKKAWRSMLELLTLP
KSLAVLFATTLLIATNWLVFIYAISVGEVLQSSLGYFINPLVSVLLGFLFLRERLERPQWISLALAVAGVLYLAIEYGSM
PWIALALALSFGLYGLIRKALHVEPLVGLTVETLLLAPFALYYLVHLNQTGAGVFLTHSTRLDLLIPMSGIVTAIPLLLF
AAAAKKLRLATIGFLQYITPTMHFLLAITIFGETFTHTHLVSFLFIWSGLALYSWHAYRFVTRQQVR

Sequences:

>Translated_307_residues
MTKPADTSELAATEARRLGVIYGLAAYLCWGFFPLYFKSVKVVPPLEMVSHRIVWSLAFLLLLITWKKAWRSMLELLTLP
KSLAVLFATTLLIATNWLVFIYAISVGEVLQSSLGYFINPLVSVLLGFLFLRERLERPQWISLALAVAGVLYLAIEYGSM
PWIALALALSFGLYGLIRKALHVEPLVGLTVETLLLAPFALYYLVHLNQTGAGVFLTHSTRLDLLIPMSGIVTAIPLLLF
AAAAKKLRLATIGFLQYITPTMHFLLAITIFGETFTHTHLVSFLFIWSGLALYSWHAYRFVTRQQVR
>Mature_306_residues
TKPADTSELAATEARRLGVIYGLAAYLCWGFFPLYFKSVKVVPPLEMVSHRIVWSLAFLLLLITWKKAWRSMLELLTLPK
SLAVLFATTLLIATNWLVFIYAISVGEVLQSSLGYFINPLVSVLLGFLFLRERLERPQWISLALAVAGVLYLAIEYGSMP
WIALALALSFGLYGLIRKALHVEPLVGLTVETLLLAPFALYYLVHLNQTGAGVFLTHSTRLDLLIPMSGIVTAIPLLLFA
AAAKKLRLATIGFLQYITPTMHFLLAITIFGETFTHTHLVSFLFIWSGLALYSWHAYRFVTRQQVR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=284, Percent_Identity=43.6619718309859, Blast_Score=240, Evalue=8e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 34437; Mature: 34306

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKPADTSELAATEARRLGVIYGLAAYLCWGFFPLYFKSVKVVPPLEMVSHRIVWSLAFL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LLLITWKKAWRSMLELLTLPKSLAVLFATTLLIATNWLVFIYAISVGEVLQSSLGYFINP
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVSVLLGFLFLRERLERPQWISLALAVAGVLYLAIEYGSMPWIALALALSFGLYGLIRKA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LHVEPLVGLTVETLLLAPFALYYLVHLNQTGAGVFLTHSTRLDLLIPMSGIVTAIPLLLF
HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECHHHHHHHHHHHHH
AAAAKKLRLATIGFLQYITPTMHFLLAITIFGETFTHTHLVSFLFIWSGLALYSWHAYRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTRQQVR
HHHHHCC
>Mature Secondary Structure 
TKPADTSELAATEARRLGVIYGLAAYLCWGFFPLYFKSVKVVPPLEMVSHRIVWSLAFL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LLLITWKKAWRSMLELLTLPKSLAVLFATTLLIATNWLVFIYAISVGEVLQSSLGYFINP
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVSVLLGFLFLRERLERPQWISLALAVAGVLYLAIEYGSMPWIALALALSFGLYGLIRKA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LHVEPLVGLTVETLLLAPFALYYLVHLNQTGAGVFLTHSTRLDLLIPMSGIVTAIPLLLF
HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECHHHHHHHHHHHHH
AAAAKKLRLATIGFLQYITPTMHFLLAITIFGETFTHTHLVSFLFIWSGLALYSWHAYRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTRQQVR
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]