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The map label for this gene is yecS [H]

Identifier: 197118314

GI number: 197118314

Start: 2232405

End: 2233223

Strand: Direct

Name: yecS [H]

Synonym: Gbem_1931

Alternate gene names: 197118314

Gene position: 2232405-2233223 (Clockwise)

Preceding gene: 197118313

Following gene: 197118315

Centisome position: 48.37

GC content: 56.65

Gene sequence:

>819_bases
ATGTTAGCCCGGCCAGGACGGTATGAAAAACTGATGAGTATTGATGCAAAAAAGCAGATCATCGACGTCGGGGACGGTGC
AGCCATCCCCCGCAAAAGCGACCGCGGACTCTTTACCGCGTGGCGCATAGCCTTCTTTGGGGCCATCGGCACCCTGATCT
ATCTGGTAAAGACAAAACCTGACCCTTATCTCAACATTCTCAAGTTCGTTCCCGACGGCATACTGGTTACTTTCCAGGTG
ACCCTCGGGGCGATACTTTTAGCCATCGTCTTCGGCCTCTTCACCGGCTTGGGGAGGATCTCCAAGAACCGGTTCCTAAA
CGGCGCAGCCTCGCTTTACGTCGAGATCATCCGCGGCATCCCCCTCCTGGTGCAGATCTTCTACATCTACTACGCCCTTG
GGCGCTTCGTGCAGGTCCCCCCGATCCTTTCCGCCATAATCGCCATGGCTGTCTGCTACGGCGCTTACATGGGCGAGGTG
GTACGGGCGGGGATCGAGTCGATCCACAAGGGGCAGAGGGAAGCAGCGCTTTCGCTCGGCATGAACGGGCGCCAGACCAT
GATCCACGTCATCCTGCCGCAGGCGGTGAAGGTGATCCTGCCCCCGGTGGGCAACGAGTTCATAGCCCTTTTGAAGGATT
CCTCGCTTGTTTCCATCATCGCCGTCGCGGATCTTTTGCGCCGCGGCCGCGAATTCGCCTCCGAGTCTTTCACCTATTTC
GAGACCTACACGGTCATAGCGCTGATTTACCTGATCATCACCTTGTTCTTCTCGAAGATCATCGGCGTCATGGAGGAGCG
TGTCAGTGTCAACAAGTAA

Upstream 100 bases:

>100_bases
GGCACGCAATGGCGCTGACCCCGCCGAAGCCCCCTGCAGGAGCTGTTTTTTGGCCCAAGCGCGTATACGGGAAAAGTTAA
AAAATCAAAGTTGAGCCGGG

Downstream 100 bases:

>100_bases
GCGCAGAAAGATGGTCGAGGCGACCGAGATCGTGAAGATCTACGGTTCTTTCCGGGCTTTGGACCGGGTTTCACTGGACG
TTTTCGACGGCGAGAAGGTG

Product: amino acid ABC transporter membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MLARPGRYEKLMSIDAKKQIIDVGDGAAIPRKSDRGLFTAWRIAFFGAIGTLIYLVKTKPDPYLNILKFVPDGILVTFQV
TLGAILLAIVFGLFTGLGRISKNRFLNGAASLYVEIIRGIPLLVQIFYIYYALGRFVQVPPILSAIIAMAVCYGAYMGEV
VRAGIESIHKGQREAALSLGMNGRQTMIHVILPQAVKVILPPVGNEFIALLKDSSLVSIIAVADLLRRGREFASESFTYF
ETYTVIALIYLIITLFFSKIIGVMEERVSVNK

Sequences:

>Translated_272_residues
MLARPGRYEKLMSIDAKKQIIDVGDGAAIPRKSDRGLFTAWRIAFFGAIGTLIYLVKTKPDPYLNILKFVPDGILVTFQV
TLGAILLAIVFGLFTGLGRISKNRFLNGAASLYVEIIRGIPLLVQIFYIYYALGRFVQVPPILSAIIAMAVCYGAYMGEV
VRAGIESIHKGQREAALSLGMNGRQTMIHVILPQAVKVILPPVGNEFIALLKDSSLVSIIAVADLLRRGREFASESFTYF
ETYTVIALIYLIITLFFSKIIGVMEERVSVNK
>Mature_272_residues
MLARPGRYEKLMSIDAKKQIIDVGDGAAIPRKSDRGLFTAWRIAFFGAIGTLIYLVKTKPDPYLNILKFVPDGILVTFQV
TLGAILLAIVFGLFTGLGRISKNRFLNGAASLYVEIIRGIPLLVQIFYIYYALGRFVQVPPILSAIIAMAVCYGAYMGEV
VRAGIESIHKGQREAALSLGMNGRQTMIHVILPQAVKVILPPVGNEFIALLKDSSLVSIIAVADLLRRGREFASESFTYF
ETYTVIALIYLIITLFFSKIIGVMEERVSVNK

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=207, Percent_Identity=38.1642512077295, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1787030, Length=202, Percent_Identity=36.6336633663366, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1786874, Length=216, Percent_Identity=31.4814814814815, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1786873, Length=212, Percent_Identity=30.6603773584906, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1787087, Length=219, Percent_Identity=27.8538812785388, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1788646, Length=213, Percent_Identity=28.169014084507, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87082239, Length=208, Percent_Identity=31.7307692307692, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788645, Length=221, Percent_Identity=27.6018099547511, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI48994930, Length=168, Percent_Identity=29.7619047619048, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787086, Length=221, Percent_Identity=24.8868778280543, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30025; Mature: 30025

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]