Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

Click here to switch to the map view.

The map label for this gene is 197118296

Identifier: 197118296

GI number: 197118296

Start: 2214009

End: 2214812

Strand: Direct

Name: 197118296

Synonym: Gbem_1913

Alternate gene names: NA

Gene position: 2214009-2214812 (Clockwise)

Preceding gene: 308535271

Following gene: 308535272

Centisome position: 47.97

GC content: 42.04

Gene sequence:

>804_bases
TTGAGTTTTGGATTCCTTGAAGGCTTCAACAATAAATTACGAAATATTTTTCGGTCAGACTGGCTTGGTATTTACTTGAC
TTCAGATTATAAGATCTTCCTTTGCGGAACTCCTTTTGACAAACCGGCACCATTTCAGTTGCAAGACGCTAACTTTGCAT
CACAGCAGTATGACGTATTGGTTAACAGCGTAATTACAGAAGTCCAAAAAAAATGCAAGCGATGGCCTCCCCCACATATA
TTCTTTTGCAACTCTCTCGATGCCCCTTCTCTCTCTACTGATTTTTTCAAAAAGATCACGGCACAGCAATCAGTTAATAT
GTATCCGACAGATTGTAAAATGCCTGCAGCGATTGGGGCGGGCATGAACGTCACTGATTTTTCAAAGCAATTAGTGATTG
CGATGGTGGAAAACACGATTCACTCGTATTTGGTCTTTGCTTCGTGCATCTATTATTACGAGTCAGCACCAATTTCGTCC
AGCGATAGCCTTCAGGAAGCACTGAATGCTCAAATTGCCAGAATTGACGCTGGAATTGAACCTGATCTTCCCACCCATTT
CAAAAATATTAATTTGGGGGAAGATGAGATCAATCAGATCAACAGTGGATGGGCCAAACCTTGTTCGGAACAATTGTTTT
TAATTGGCTCCCCGAGTGTGTTGATTGACATCGACAAAGAAATTCGGGGCTACAAGATTGTGTCGTGCGAAGGTCTGGAT
GAGTGCATCGTATCTGGTATGGACACAATAATCAAAGGAGTTTCGCAGCTCCCAGCTGGCACAAGAATTGGAAAAAAAGA
CTAA

Upstream 100 bases:

>100_bases
CCAGGCAGTTGGACCGGCCCGAAAAGCCGCCCGGTCAACTCCCGCCCGTTATGCATAAAGGAAGAAACACCATAGAAGAA
GAAACTAGCGGGGGTAAATT

Downstream 100 bases:

>100_bases
CCATCGGCAACACCGGTCAAGCCGGTGGTGCCTCAGCCCCGTTGGCTATACAGATAGAGATCTTGGTGACAGATGAATCG
AAGCGGGTGTGGCGGGGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSFGFLEGFNNKLRNIFRSDWLGIYLTSDYKIFLCGTPFDKPAPFQLQDANFASQQYDVLVNSVITEVQKKCKRWPPPHI
FFCNSLDAPSLSTDFFKKITAQQSVNMYPTDCKMPAAIGAGMNVTDFSKQLVIAMVENTIHSYLVFASCIYYYESAPISS
SDSLQEALNAQIARIDAGIEPDLPTHFKNINLGEDEINQINSGWAKPCSEQLFLIGSPSVLIDIDKEIRGYKIVSCEGLD
ECIVSGMDTIIKGVSQLPAGTRIGKKD

Sequences:

>Translated_267_residues
MSFGFLEGFNNKLRNIFRSDWLGIYLTSDYKIFLCGTPFDKPAPFQLQDANFASQQYDVLVNSVITEVQKKCKRWPPPHI
FFCNSLDAPSLSTDFFKKITAQQSVNMYPTDCKMPAAIGAGMNVTDFSKQLVIAMVENTIHSYLVFASCIYYYESAPISS
SDSLQEALNAQIARIDAGIEPDLPTHFKNINLGEDEINQINSGWAKPCSEQLFLIGSPSVLIDIDKEIRGYKIVSCEGLD
ECIVSGMDTIIKGVSQLPAGTRIGKKD
>Mature_266_residues
SFGFLEGFNNKLRNIFRSDWLGIYLTSDYKIFLCGTPFDKPAPFQLQDANFASQQYDVLVNSVITEVQKKCKRWPPPHIF
FCNSLDAPSLSTDFFKKITAQQSVNMYPTDCKMPAAIGAGMNVTDFSKQLVIAMVENTIHSYLVFASCIYYYESAPISSS
DSLQEALNAQIARIDAGIEPDLPTHFKNINLGEDEINQINSGWAKPCSEQLFLIGSPSVLIDIDKEIRGYKIVSCEGLDE
CIVSGMDTIIKGVSQLPAGTRIGKKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29698; Mature: 29567

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFGFLEGFNNKLRNIFRSDWLGIYLTSDYKIFLCGTPFDKPAPFQLQDANFASQQYDVL
CCCCCHHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCCCCCCCCEEECCCCCHHHHHHH
VNSVITEVQKKCKRWPPPHIFFCNSLDAPSLSTDFFKKITAQQSVNMYPTDCKMPAAIGA
HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCC
GMNVTDFSKQLVIAMVENTIHSYLVFASCIYYYESAPISSSDSLQEALNAQIARIDAGIE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
PDLPTHFKNINLGEDEINQINSGWAKPCSEQLFLIGSPSVLIDIDKEIRGYKIVSCEGLD
CCCCCHHCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCEEEEEECCCCCCEEEEEECCHH
ECIVSGMDTIIKGVSQLPAGTRIGKKD
HHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SFGFLEGFNNKLRNIFRSDWLGIYLTSDYKIFLCGTPFDKPAPFQLQDANFASQQYDVL
CCCCHHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCCCCCCCCEEECCCCCHHHHHHH
VNSVITEVQKKCKRWPPPHIFFCNSLDAPSLSTDFFKKITAQQSVNMYPTDCKMPAAIGA
HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCC
GMNVTDFSKQLVIAMVENTIHSYLVFASCIYYYESAPISSSDSLQEALNAQIARIDAGIE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
PDLPTHFKNINLGEDEINQINSGWAKPCSEQLFLIGSPSVLIDIDKEIRGYKIVSCEGLD
CCCCCHHCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCEEEEEECCCCCCEEEEEECCHH
ECIVSGMDTIIKGVSQLPAGTRIGKKD
HHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA