| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is atoS [C]
Identifier: 197118249
GI number: 197118249
Start: 2159588
End: 2161537
Strand: Reverse
Name: atoS [C]
Synonym: Gbem_1866
Alternate gene names: 197118249
Gene position: 2161537-2159588 (Counterclockwise)
Preceding gene: 197118250
Following gene: 197118248
Centisome position: 46.84
GC content: 65.28
Gene sequence:
>1950_bases ATGCAAGCTCGCCGACCGGCCCGGCAAGTGGGAAATGAAACAGCTGACGCGTCCAGGAATGCGCCCCCCGGCGGCTCAGC GCGCTGCCTCGCAGACCTCTGCAAACGCCTGAACGGCACGCCGGACCCGCTTGAGGCGCTGGGGGTGCTTTTGCAGGCGG CGATGGAGGCGGTCGACGCCGCCGAGGCAAGGGGAGGGATCGTCTCCGACGACGACGTCGTGACGGAGCGCCTGTCCTGC GGGAGCCCGGGCCAGCTGCGCCGCAGCAGTGCCGCAACCCACGCGACCTACCAGCGCCTGCTGCGGCAACCGGAGGTCTG GATCGGCAATGACGGTGCAACCGCGGTCCCCCTGGTGGACAGCACGAAGGGCCTGGTTGCCTGGATAGAGCTGAAGCACA CGCCCCCCCTCCCCTTCTCCGAAACGGAGGTCGAGCTGCTCGAAGCGATGGCCGCGGTGACGACACTGGCGCTGGAGACA GCCAGGATGAGATGCGAACACCGCCATTCCAGCCGGGCCAGCGACGAGGCCAGCTCCCTGCTGTCGGCGACTATCGAGTC CACTCTGGACGGTATCATGGCAGTCGATGCCAACGGCGACATCGTGGCGTACAACCGCCGCTTCATCCAAATGTGGGGCC TTGAGGAAGAGGACCTGACCGGCGGGGACTGCAACCACCTGCTACTGTCGCTTCTGGGAGAGCTCAAGGACCCGGTCCTC TTCTTCGAGAAAGTGAGCGAGCTTTACTGGCAGCCCGAATCCGAAAGCTACGACGTGGTCGAGCTGCGTAGCGGCAGGTG CTTCGAGCGTTTCTCCCGCCCGCGCCTGACCGAGGACGGCAGGCCCGCCGGACGGGTCTGGACCTTCCACGACGTAACCG AACTGAAGAAGCTGGAAAACCAGCTGCTGCACGCGCAGAAGATGGAGGCGATAGGAACCCTCGCCGGCGGGATCGCCCAC GACTTCAACAACATCATGACCGCGGTGATCGGCTACACCGACCTCCTCATGCTGGAGCTCGTCCCCCCCGCGCCGTACCG CGGCTTCCTAGAGAACATCCAGAACGCGTCGCACCGCGCCATTGCCCTGGTGAAGAACCTCCTCGCCTTCAGCAGGGAGG AAGCGCTCCCAACCGCCAAGCTCGAGTGCAACGCCCTGCTCCAGAACGTGGCCGGGCTTATGAAAAGGTTGATCGGCCAC GAAGTGGATTTCGTACTGAACCTGTCGAGCGCGCCGCAAGGTATCCTGGTGGACCAGGGCCAGATCGAGCAGGTGCTGGT GAACCTCGCCACCAACGCACGGGACGCCATGCCCCACGGCGGCACCCTCACCATCGAGGTAGCCGCCATCGAACTCTCGG CGCTGGAGCTCGCCGGACACCACACCGCGAAAGCGGGACCGTACGTGCAGATCTCCTTTTCCGACACCGGCCTCGGCATA GACGAGAGCGTGAAAAGCAGGATCTTCGACCCCTTTTACACCACGAAGGAAGTCGGCAAAGGGTCAGGGCTCGGCCTCTC CATTAGCTACGGCATCGTGAAGCGGCACGGCGGGTTGATCGACGTGGCGAGCGGCCAGGGTCGGGGCACCACCTTCTCCG TGTTGCTCCCGAAGGTGGAGCTGGCCCCCGCGCTGCGCCCGCATCCCTTGGTCTCCCCGCTCAAGGAGGCGGGATCGGTC CTGCCGGTTGACTACGATGAGCCGGTGCGCAACCCGCAAAATTCAGCCCCGTCGCCGAGCCGCCATGGTGGCCCCATGCC CATCCCCCCGCTTGACCGTAACTCGCGGGCTGCAAGCCCCCTTTACCACCCCGTGGAGCCTTCCCATCTGCGTCCCATCT GCGTCCCATCTGCGTCCCATCTGCGTCCCATTTGCGTCCCATCTGCGTCCCATCTCCTTCCCTCTCGATCACCGCGGCCG GCTTTCGAGCCGCTCGCGCGCTCCTTTTAA
Upstream 100 bases:
>100_bases GTAACACAACCACAAGAAAAGCGGTCTATGCTGACACCCACATGCAACGGCGCACGGCGCCGGCCAAGGATTCGATCCGC GTTGACAAGGGAGAAACACG
Downstream 100 bases:
>100_bases GAGCTACGCCGAACGTTCCGTCCGTGAAAAGGACGAATTTACGACACATTGACAGAGCTGTAACGGTTTCTAAACAAAGA AGTTATATGAAGTATACGAG
Product: PAS domain-containing sensor histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 649; Mature: 649
Protein sequence:
>649_residues MQARRPARQVGNETADASRNAPPGGSARCLADLCKRLNGTPDPLEALGVLLQAAMEAVDAAEARGGIVSDDDVVTERLSC GSPGQLRRSSAATHATYQRLLRQPEVWIGNDGATAVPLVDSTKGLVAWIELKHTPPLPFSETEVELLEAMAAVTTLALET ARMRCEHRHSSRASDEASSLLSATIESTLDGIMAVDANGDIVAYNRRFIQMWGLEEEDLTGGDCNHLLLSLLGELKDPVL FFEKVSELYWQPESESYDVVELRSGRCFERFSRPRLTEDGRPAGRVWTFHDVTELKKLENQLLHAQKMEAIGTLAGGIAH DFNNIMTAVIGYTDLLMLELVPPAPYRGFLENIQNASHRAIALVKNLLAFSREEALPTAKLECNALLQNVAGLMKRLIGH EVDFVLNLSSAPQGILVDQGQIEQVLVNLATNARDAMPHGGTLTIEVAAIELSALELAGHHTAKAGPYVQISFSDTGLGI DESVKSRIFDPFYTTKEVGKGSGLGLSISYGIVKRHGGLIDVASGQGRGTTFSVLLPKVELAPALRPHPLVSPLKEAGSV LPVDYDEPVRNPQNSAPSPSRHGGPMPIPPLDRNSRAASPLYHPVEPSHLRPICVPSASHLRPICVPSASHLLPSRSPRP AFEPLARSF
Sequences:
>Translated_649_residues MQARRPARQVGNETADASRNAPPGGSARCLADLCKRLNGTPDPLEALGVLLQAAMEAVDAAEARGGIVSDDDVVTERLSC GSPGQLRRSSAATHATYQRLLRQPEVWIGNDGATAVPLVDSTKGLVAWIELKHTPPLPFSETEVELLEAMAAVTTLALET ARMRCEHRHSSRASDEASSLLSATIESTLDGIMAVDANGDIVAYNRRFIQMWGLEEEDLTGGDCNHLLLSLLGELKDPVL FFEKVSELYWQPESESYDVVELRSGRCFERFSRPRLTEDGRPAGRVWTFHDVTELKKLENQLLHAQKMEAIGTLAGGIAH DFNNIMTAVIGYTDLLMLELVPPAPYRGFLENIQNASHRAIALVKNLLAFSREEALPTAKLECNALLQNVAGLMKRLIGH EVDFVLNLSSAPQGILVDQGQIEQVLVNLATNARDAMPHGGTLTIEVAAIELSALELAGHHTAKAGPYVQISFSDTGLGI DESVKSRIFDPFYTTKEVGKGSGLGLSISYGIVKRHGGLIDVASGQGRGTTFSVLLPKVELAPALRPHPLVSPLKEAGSV LPVDYDEPVRNPQNSAPSPSRHGGPMPIPPLDRNSRAASPLYHPVEPSHLRPICVPSASHLRPICVPSASHLLPSRSPRP AFEPLARSF >Mature_649_residues MQARRPARQVGNETADASRNAPPGGSARCLADLCKRLNGTPDPLEALGVLLQAAMEAVDAAEARGGIVSDDDVVTERLSC GSPGQLRRSSAATHATYQRLLRQPEVWIGNDGATAVPLVDSTKGLVAWIELKHTPPLPFSETEVELLEAMAAVTTLALET ARMRCEHRHSSRASDEASSLLSATIESTLDGIMAVDANGDIVAYNRRFIQMWGLEEEDLTGGDCNHLLLSLLGELKDPVL FFEKVSELYWQPESESYDVVELRSGRCFERFSRPRLTEDGRPAGRVWTFHDVTELKKLENQLLHAQKMEAIGTLAGGIAH DFNNIMTAVIGYTDLLMLELVPPAPYRGFLENIQNASHRAIALVKNLLAFSREEALPTAKLECNALLQNVAGLMKRLIGH EVDFVLNLSSAPQGILVDQGQIEQVLVNLATNARDAMPHGGTLTIEVAAIELSALELAGHHTAKAGPYVQISFSDTGLGI DESVKSRIFDPFYTTKEVGKGSGLGLSISYGIVKRHGGLIDVASGQGRGTTFSVLLPKVELAPALRPHPLVSPLKEAGSV LPVDYDEPVRNPQNSAPSPSRHGGPMPIPPLDRNSRAASPLYHPVEPSHLRPICVPSASHLRPICVPSASHLLPSRSPRP AFEPLARSF
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=371, Percent_Identity=28.0323450134771, Blast_Score=125, Evalue=6e-30, Organism=Escherichia coli, GI1790436, Length=252, Percent_Identity=26.1904761904762, Blast_Score=96, Evalue=1e-20, Organism=Escherichia coli, GI1789149, Length=229, Percent_Identity=27.9475982532751, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI48994928, Length=282, Percent_Identity=23.758865248227, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1790300, Length=243, Percent_Identity=28.8065843621399, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1786600, Length=261, Percent_Identity=24.1379310344828, Blast_Score=66, Evalue=6e-12, Organism=Escherichia coli, GI145693157, Length=265, Percent_Identity=24.5283018867925, Blast_Score=63, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 70118; Mature: 70118
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: PS50112 PAS ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQARRPARQVGNETADASRNAPPGGSARCLADLCKRLNGTPDPLEALGVLLQAAMEAVDA CCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH AEARGGIVSDDDVVTERLSCGSPGQLRRSSAATHATYQRLLRQPEVWIGNDGATAVPLVD HHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEC STKGLVAWIELKHTPPLPFSETEVELLEAMAAVTTLALETARMRCEHRHSSRASDEASSL CCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH LSATIESTLDGIMAVDANGDIVAYNRRFIQMWGLEEEDLTGGDCNHLLLSLLGELKDPVL HHHHHHHHHCCEEEECCCCCEEEECCEEEHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHH FFEKVSELYWQPESESYDVVELRSGRCFERFSRPRLTEDGRPAGRVWTFHDVTELKKLEN HHHHHHHHHCCCCCCCCCEEEECCCCHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHH QLLHAQKMEAIGTLAGGIAHDFNNIMTAVIGYTDLLMLELVPPAPYRGFLENIQNASHRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHH IALVKNLLAFSREEALPTAKLECNALLQNVAGLMKRLIGHEVDFVLNLSSAPQGILVDQG HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCH QIEQVLVNLATNARDAMPHGGTLTIEVAAIELSALELAGHHTAKAGPYVQISFSDTGLGI HHHHHHHHHHHCHHHCCCCCCEEEEEEEEEEEHHHHHHCCCCCCCCCEEEEEECCCCCCC DESVKSRIFDPFYTTKEVGKGSGLGLSISYGIVKRHGGLIDVASGQGRGTTFSVLLPKVE CHHHHHHHCCCCHHHHHCCCCCCCEEEEEHHHHHHCCCEEEECCCCCCCCEEEEECCCHH LAPALRPHPLVSPLKEAGSVLPVDYDEPVRNPQNSAPSPSRHGGPMPIPPLDRNSRAASP HCCCCCCCCHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC LYHPVEPSHLRPICVPSASHLRPICVPSASHLLPSRSPRPAFEPLARSF CCCCCCCCCCCEEECCCHHCCCEEECCCHHHHCCCCCCCCHHHHHHHCC >Mature Secondary Structure MQARRPARQVGNETADASRNAPPGGSARCLADLCKRLNGTPDPLEALGVLLQAAMEAVDA CCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH AEARGGIVSDDDVVTERLSCGSPGQLRRSSAATHATYQRLLRQPEVWIGNDGATAVPLVD HHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEC STKGLVAWIELKHTPPLPFSETEVELLEAMAAVTTLALETARMRCEHRHSSRASDEASSL CCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH LSATIESTLDGIMAVDANGDIVAYNRRFIQMWGLEEEDLTGGDCNHLLLSLLGELKDPVL HHHHHHHHHCCEEEECCCCCEEEECCEEEHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHH FFEKVSELYWQPESESYDVVELRSGRCFERFSRPRLTEDGRPAGRVWTFHDVTELKKLEN HHHHHHHHHCCCCCCCCCEEEECCCCHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHH QLLHAQKMEAIGTLAGGIAHDFNNIMTAVIGYTDLLMLELVPPAPYRGFLENIQNASHRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHH IALVKNLLAFSREEALPTAKLECNALLQNVAGLMKRLIGHEVDFVLNLSSAPQGILVDQG HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCH QIEQVLVNLATNARDAMPHGGTLTIEVAAIELSALELAGHHTAKAGPYVQISFSDTGLGI HHHHHHHHHHHCHHHCCCCCCEEEEEEEEEEEHHHHHHCCCCCCCCCEEEEEECCCCCCC DESVKSRIFDPFYTTKEVGKGSGLGLSISYGIVKRHGGLIDVASGQGRGTTFSVLLPKVE CHHHHHHHCCCCHHHHHCCCCCCCEEEEEHHHHHHCCCEEEECCCCCCCCEEEEECCCHH LAPALRPHPLVSPLKEAGSVLPVDYDEPVRNPQNSAPSPSRHGGPMPIPPLDRNSRAASP HCCCCCCCCHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC LYHPVEPSHLRPICVPSASHLRPICVPSASHLLPSRSPRPAFEPLARSF CCCCCCCCCCCEEECCCHHCCCEEECCCHHHHCCCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA