| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is pstS-4 [H]
Identifier: 197118235
GI number: 197118235
Start: 2145918
End: 2146946
Strand: Direct
Name: pstS-4 [H]
Synonym: Gbem_1852
Alternate gene names: 197118235
Gene position: 2145918-2146946 (Clockwise)
Preceding gene: 308535268
Following gene: 197118236
Centisome position: 46.5
GC content: 60.06
Gene sequence:
>1029_bases ATGATCAAGAGCATTAAAAAAGCATTCCTGACCTTGGCCCTGATGGCAGCATTTGGTACCGCAGCGCAGGCATCCGCCGA GACCCTCATCAACGGCGCCGGCGCCACCTTCCCGTACCCGCTTTACTCCAAGTGGTTCACCGAGTACGCCAAGGTGGATA AAGCGGTGAAGTTCAACTATCAGTCCATCGGCAGCGGCGGCGGCATCAAGCAGATCAGCGCGCAGACCGTCGACTTCGGC GCGAGCGACAAGTTCCTCTCCGACCAGGAGCTCAATGCAGCTCCGGGCAAGCTGATCCACATCCCGACCGTCATGGGCGC CGTGGTAGTGACCTACAACGTCCCGGGCGTGGTTAGCGGGCTGAAACTCAACTCCGAGGACGTCGCCAACATCTACCTCG GTAAGATCACCATGTGGAACGACCCGAGGATCGCCGACGACAACAAGGGGGTGAACCTCCCGGCCAAGCCGATCATCGTC GTGCACCGCTCCGATGGGTCCGGCACCACCAGCATCTTCACCGACTACCTGAACGGGATGAACCGCGAATGGGCGCAGAA GGTCGGCAAGGGCGCTTCGGTGAAGTGGCCGGTTGGCCTTGGCGGCAAGGGTAACGAGGGTGTCGCGGGGCAGGTGAAGA CCACCCCGTATTCCATCGGCTACGTCGAACTCGCCTACGCCTTTGAGAACAAACTCCCCTACGCTTCGCTCAAGAACAAG GCCGGCGTCTTCGTCGAACCCTCCATCAAGTCCACCAGTGCGGCAGCCGCCGCAGCCGTCAAGGACATGCCGGCTGATTA TCGCATCTCCCTGGTGAATCAGCCGGGCAAGGACGCCTATCCCGTGGTCGGATTTACCTGGCTCTTGGTGTACGAGCACC AGAAGGATGCAGCCAAAGGGAAGCAGATGGTCGAGTTCTTGAACTGGGCCATGACCAAGGGGCAGAAGATGGCCGCCCCG ATGCTCTACGCGCCGCTGCCGGAGAGCGTCGTGAAAATGGTGCAGAAAACCATCAAGACCATCAAATAG
Upstream 100 bases:
>100_bases CGCCCGCGGCAACTATTCACAGACTCTTGCCATGACTGTAACGAGATCGCGACATTGCTCGATTATAGTCCTCGGCAAAT CCAGAAAGGAGACATTCAAA
Downstream 100 bases:
>100_bases GTCCCCACGAAGAACAGTGCCCCGCGGGGCGGCAAATGCCGCCCCGCGGGATTTGCCTTCCCCGCCGTCCCCTCGTATCA CCCGGCTGATCCTTCTGGTT
Product: phosphate ABC transporter periplasmic phosphate-binding protein
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: PBP [H]
Number of amino acids: Translated: 342; Mature: 342
Protein sequence:
>342_residues MIKSIKKAFLTLALMAAFGTAAQASAETLINGAGATFPYPLYSKWFTEYAKVDKAVKFNYQSIGSGGGIKQISAQTVDFG ASDKFLSDQELNAAPGKLIHIPTVMGAVVVTYNVPGVVSGLKLNSEDVANIYLGKITMWNDPRIADDNKGVNLPAKPIIV VHRSDGSGTTSIFTDYLNGMNREWAQKVGKGASVKWPVGLGGKGNEGVAGQVKTTPYSIGYVELAYAFENKLPYASLKNK AGVFVEPSIKSTSAAAAAAVKDMPADYRISLVNQPGKDAYPVVGFTWLLVYEHQKDAAKGKQMVEFLNWAMTKGQKMAAP MLYAPLPESVVKMVQKTIKTIK
Sequences:
>Translated_342_residues MIKSIKKAFLTLALMAAFGTAAQASAETLINGAGATFPYPLYSKWFTEYAKVDKAVKFNYQSIGSGGGIKQISAQTVDFG ASDKFLSDQELNAAPGKLIHIPTVMGAVVVTYNVPGVVSGLKLNSEDVANIYLGKITMWNDPRIADDNKGVNLPAKPIIV VHRSDGSGTTSIFTDYLNGMNREWAQKVGKGASVKWPVGLGGKGNEGVAGQVKTTPYSIGYVELAYAFENKLPYASLKNK AGVFVEPSIKSTSAAAAAAVKDMPADYRISLVNQPGKDAYPVVGFTWLLVYEHQKDAAKGKQMVEFLNWAMTKGQKMAAP MLYAPLPESVVKMVQKTIKTIK >Mature_342_residues MIKSIKKAFLTLALMAAFGTAAQASAETLINGAGATFPYPLYSKWFTEYAKVDKAVKFNYQSIGSGGGIKQISAQTVDFG ASDKFLSDQELNAAPGKLIHIPTVMGAVVVTYNVPGVVSGLKLNSEDVANIYLGKITMWNDPRIADDNKGVNLPAKPIIV VHRSDGSGTTSIFTDYLNGMNREWAQKVGKGASVKWPVGLGGKGNEGVAGQVKTTPYSIGYVELAYAFENKLPYASLKNK AGVFVEPSIKSTSAAAAAAVKDMPADYRISLVNQPGKDAYPVVGFTWLLVYEHQKDAAKGKQMVEFLNWAMTKGQKMAAP MLYAPLPESVVKMVQKTIKTIK
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
Organism=Escherichia coli, GI2367271, Length=327, Percent_Identity=47.0948012232416, Blast_Score=278, Evalue=3e-76,
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005673 - InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 36717; Mature: 36717
Theoretical pI: Translated: 9.98; Mature: 9.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKSIKKAFLTLALMAAFGTAAQASAETLINGAGATFPYPLYSKWFTEYAKVDKAVKFNY CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEECH QSIGSGGGIKQISAQTVDFGASDKFLSDQELNAAPGKLIHIPTVMGAVVVTYNVPGVVSG HHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHEEEEEEECCCCCEEC LKLNSEDVANIYLGKITMWNDPRIADDNKGVNLPAKPIIVVHRSDGSGTTSIFTDYLNGM CEECCCCCCEEEEEEEEEECCCEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCC NREWAQKVGKGASVKWPVGLGGKGNEGVAGQVKTTPYSIGYVELAYAFENKLPYASLKNK CHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEECCCEECCCEEEEEEHHCCCCHHHHCCC AGVFVEPSIKSTSAAAAAAVKDMPADYRISLVNQPGKDAYPVVGFTWLLVYEHQKDAAKG CCEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHEEEEEEEEECCHHHHHH KQMVEFLNWAMTKGQKMAAPMLYAPLPESVVKMVQKTIKTIK HHHHHHHHHHHCCCCHHCCCEEECCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MIKSIKKAFLTLALMAAFGTAAQASAETLINGAGATFPYPLYSKWFTEYAKVDKAVKFNY CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEECH QSIGSGGGIKQISAQTVDFGASDKFLSDQELNAAPGKLIHIPTVMGAVVVTYNVPGVVSG HHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHEEEEEEECCCCCEEC LKLNSEDVANIYLGKITMWNDPRIADDNKGVNLPAKPIIVVHRSDGSGTTSIFTDYLNGM CEECCCCCCEEEEEEEEEECCCEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCC NREWAQKVGKGASVKWPVGLGGKGNEGVAGQVKTTPYSIGYVELAYAFENKLPYASLKNK CHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEECCCEECCCEEEEEEHHCCCCHHHHCCC AGVFVEPSIKSTSAAAAAAVKDMPADYRISLVNQPGKDAYPVVGFTWLLVYEHQKDAAKG CCEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHEEEEEEEEECCHHHHHH KQMVEFLNWAMTKGQKMAAPMLYAPLPESVVKMVQKTIKTIK HHHHHHHHHHHCCCCHHCCCEEECCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11248100 [H]