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The map label for this gene is cpaC-2 [C]

Identifier: 197118220

GI number: 197118220

Start: 2132791

End: 2134275

Strand: Reverse

Name: cpaC-2 [C]

Synonym: Gbem_1836

Alternate gene names: 197118220

Gene position: 2134275-2132791 (Counterclockwise)

Preceding gene: 197118221

Following gene: 197118219

Centisome position: 46.24

GC content: 56.77

Gene sequence:

>1485_bases
ATGGAACCGTTCGCAACCGGAAGGAAAGTCTGCCTGCTCTTGGTGCTTTTGTTAGCTCTCTGCTATCCCGTAGCCGCGCA
CGCGGCAGTGACCACAGAGGTCGTGGTCAACAGGAGCGTGCTGGTTGATCTGCATACGAAATCGGAGCGGGTCTCTATCG
CTTCTCCCGACGTTGCGGAGCTTGTGGTCATTTCCCCTACTCAATTGCAGATCAACGGGAAAAAGGTAGGCTCCACGACC
TTGATTGTCTGGGACACCGCTGGAAAAACCAGCTTCTTCGACGTTCGCGTCAAGCGAAATGAGAGCGTTTTAGAGAGCCA
GATCGAGGCATTGCAGGACCAAATCCAGCAAATGGCTCCAAAAGACAATATCAAGGTCGATTACGCCAACGACACGATAG
TTCTCTCAGGGACGGCCGCCAATGAACAGACGGTGGCAAAGGCGCTACAACTGGCGCAGGCCTATACCGCCGGCAACGGC
TCGAAAGCGGGCGCTCCAGCAACCGACCCACCCCTCGACACGTCCAGGTCTTCCTATCAGTTGTCCGAAACCCAAACAGG
TCGGCAGGGAGGAGACGCTGACACAGTTATCACCGTCCTGAACCACGTTGAGATAGTCGAGCCCCAGCAGGTTCTCCTGG
AAGTGAAGGTGGCCCAGGTGGACAAGACCGCACTGAAGTCACTGGGGATCAGCGCATTCATAAGGGGAGCCAGCGCCGAG
GGGTTTTCTAACCTGGTGGGAGCGCCCGTCGGCGAACTCGCGATTAAAAACCCTGACGGATCCGTCAGATCGCAGGCCAC
CGGCATAGCCGGGCCCATCCCCGGTTTGGCCAATTTCACGCCTATCGATTCGTACCAGTTGGGCGTCTCGTCGTTCAAGG
CCGGCATAGGCGCAGTATTGAGGGCCCTGGTTACGAAAAACCTGGCCAAGGTGCTGGCGGAGCCGAACCTGATGGTGCAA
AGCGGACAGGTCGGGAAATTCCTCGCGGGCAGCAAGATCCCCTATTCAATCGTTTCCGGCGTCGGCGCTTTATCCGCCAC
ATCAATCCAGTTCATCGACGTAGGGGTAAAGCTGAACTTCAAGCCGGAGGTGCTCGAAAACGGTCTGATCTCGCTGAAGA
TAGACCCTGCCGAGGTTAGCAGCATAACCGGAGTCCTTGCCGTAAACGGCTACCCCATCATCGACACACGTGAGGTTCGC
ACCCGCGTCAAGCTTAAGGATGGCGAAAGCCTGATCCTTGCCGGACTGCTGCAGGAGGAGGCGATAAAGGCGATGTCCAA
GATACCCATTCTGGGGGACATCCCCATTCTTGGCGCCCTGTTCCGGTCCACCCAGGACGACATAAAGGAAAAGGAACTGG
TCTTTTTCATCACGCCCAAGCTAGTTACAGCCAGCGCTCCGGGAAGCCGGATTCTGCTTCCCACGGACAAGCCCCTGACT
CCAGAGCAGGAAAAGGAGCTCCAATGGGTACCGATTCCAAATTGA

Upstream 100 bases:

>100_bases
GTCTGTCCGCGAGTTTGTACAGGACTAGAGGCCGCTTGCGATAAGCAACTCCATCGACCGCTGGGATGTTATTTTCCATT
TCTTATGACGAGGTGACAGG

Downstream 100 bases:

>100_bases
TCCGCAGTGAAAAGGGAATGGTGATCGTCTACGTGGCGATCCTATTGATGATGATGTTCGGGTTCCTGGGCCTGGCCGTG
GACGGTGGCCATCTTTTCAA

Product: Flp pilus assembly secretin CpaC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MEPFATGRKVCLLLVLLLALCYPVAAHAAVTTEVVVNRSVLVDLHTKSERVSIASPDVAELVVISPTQLQINGKKVGSTT
LIVWDTAGKTSFFDVRVKRNESVLESQIEALQDQIQQMAPKDNIKVDYANDTIVLSGTAANEQTVAKALQLAQAYTAGNG
SKAGAPATDPPLDTSRSSYQLSETQTGRQGGDADTVITVLNHVEIVEPQQVLLEVKVAQVDKTALKSLGISAFIRGASAE
GFSNLVGAPVGELAIKNPDGSVRSQATGIAGPIPGLANFTPIDSYQLGVSSFKAGIGAVLRALVTKNLAKVLAEPNLMVQ
SGQVGKFLAGSKIPYSIVSGVGALSATSIQFIDVGVKLNFKPEVLENGLISLKIDPAEVSSITGVLAVNGYPIIDTREVR
TRVKLKDGESLILAGLLQEEAIKAMSKIPILGDIPILGALFRSTQDDIKEKELVFFITPKLVTASAPGSRILLPTDKPLT
PEQEKELQWVPIPN

Sequences:

>Translated_494_residues
MEPFATGRKVCLLLVLLLALCYPVAAHAAVTTEVVVNRSVLVDLHTKSERVSIASPDVAELVVISPTQLQINGKKVGSTT
LIVWDTAGKTSFFDVRVKRNESVLESQIEALQDQIQQMAPKDNIKVDYANDTIVLSGTAANEQTVAKALQLAQAYTAGNG
SKAGAPATDPPLDTSRSSYQLSETQTGRQGGDADTVITVLNHVEIVEPQQVLLEVKVAQVDKTALKSLGISAFIRGASAE
GFSNLVGAPVGELAIKNPDGSVRSQATGIAGPIPGLANFTPIDSYQLGVSSFKAGIGAVLRALVTKNLAKVLAEPNLMVQ
SGQVGKFLAGSKIPYSIVSGVGALSATSIQFIDVGVKLNFKPEVLENGLISLKIDPAEVSSITGVLAVNGYPIIDTREVR
TRVKLKDGESLILAGLLQEEAIKAMSKIPILGDIPILGALFRSTQDDIKEKELVFFITPKLVTASAPGSRILLPTDKPLT
PEQEKELQWVPIPN
>Mature_494_residues
MEPFATGRKVCLLLVLLLALCYPVAAHAAVTTEVVVNRSVLVDLHTKSERVSIASPDVAELVVISPTQLQINGKKVGSTT
LIVWDTAGKTSFFDVRVKRNESVLESQIEALQDQIQQMAPKDNIKVDYANDTIVLSGTAANEQTVAKALQLAQAYTAGNG
SKAGAPATDPPLDTSRSSYQLSETQTGRQGGDADTVITVLNHVEIVEPQQVLLEVKVAQVDKTALKSLGISAFIRGASAE
GFSNLVGAPVGELAIKNPDGSVRSQATGIAGPIPGLANFTPIDSYQLGVSSFKAGIGAVLRALVTKNLAKVLAEPNLMVQ
SGQVGKFLAGSKIPYSIVSGVGALSATSIQFIDVGVKLNFKPEVLENGLISLKIDPAEVSSITGVLAVNGYPIIDTREVR
TRVKLKDGESLILAGLLQEEAIKAMSKIPILGDIPILGALFRSTQDDIKEKELVFFITPKLVTASAPGSRILLPTDKPLT
PEQEKELQWVPIPN

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=256, Percent_Identity=28.90625, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87082242, Length=257, Percent_Identity=28.4046692607004, Blast_Score=96, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 52279; Mature: 52279

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS50914 BON ; PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPFATGRKVCLLLVLLLALCYPVAAHAAVTTEVVVNRSVLVDLHTKSERVSIASPDVAE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEEECCCCEEEECCCCCEE
LVVISPTQLQINGKKVGSTTLIVWDTAGKTSFFDVRVKRNESVLESQIEALQDQIQQMAP
EEEECCCEEEECCEEECCEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCC
KDNIKVDYANDTIVLSGTAANEQTVAKALQLAQAYTAGNGSKAGAPATDPPLDTSRSSYQ
CCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEE
LSETQTGRQGGDADTVITVLNHVEIVEPQQVLLEVKVAQVDKTALKSLGISAFIRGASAE
EHHCCCCCCCCCHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCCC
GFSNLVGAPVGELAIKNPDGSVRSQATGIAGPIPGLANFTPIDSYQLGVSSFKAGIGAVL
CHHHHHCCCCCCEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHH
RALVTKNLAKVLAEPNLMVQSGQVGKFLAGSKIPYSIVSGVGALSATSIQFIDVGVKLNF
HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEEEEEEECC
KPEVLENGLISLKIDPAEVSSITGVLAVNGYPIIDTREVRTRVKLKDGESLILAGLLQEE
CHHHHHCCEEEEEECHHHHHHHEEEEEECCCCEEECHHHHEEEEECCCCEEEEHHHHHHH
AIKAMSKIPILGDIPILGALFRSTQDDIKEKELVFFITPKLVTASAPGSRILLPTDKPLT
HHHHHHHCCCEECCHHHHHHHHCCHHHCCCCEEEEEECCCEEEECCCCCEEEECCCCCCC
PEQEKELQWVPIPN
CCHHCCEEEEECCC
>Mature Secondary Structure
MEPFATGRKVCLLLVLLLALCYPVAAHAAVTTEVVVNRSVLVDLHTKSERVSIASPDVAE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEEECCCCEEEECCCCCEE
LVVISPTQLQINGKKVGSTTLIVWDTAGKTSFFDVRVKRNESVLESQIEALQDQIQQMAP
EEEECCCEEEECCEEECCEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCC
KDNIKVDYANDTIVLSGTAANEQTVAKALQLAQAYTAGNGSKAGAPATDPPLDTSRSSYQ
CCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEE
LSETQTGRQGGDADTVITVLNHVEIVEPQQVLLEVKVAQVDKTALKSLGISAFIRGASAE
EHHCCCCCCCCCHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCCC
GFSNLVGAPVGELAIKNPDGSVRSQATGIAGPIPGLANFTPIDSYQLGVSSFKAGIGAVL
CHHHHHCCCCCCEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHH
RALVTKNLAKVLAEPNLMVQSGQVGKFLAGSKIPYSIVSGVGALSATSIQFIDVGVKLNF
HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEEEEEEECC
KPEVLENGLISLKIDPAEVSSITGVLAVNGYPIIDTREVRTRVKLKDGESLILAGLLQEE
CHHHHHCCEEEEEECHHHHHHHEEEEEECCCCEEECHHHHEEEEECCCCEEEEHHHHHHH
AIKAMSKIPILGDIPILGALFRSTQDDIKEKELVFFITPKLVTASAPGSRILLPTDKPLT
HHHHHHHCCCEECCHHHHHHHHCCHHHCCCCEEEEEECCCEEEECCCCCEEEECCCCCCC
PEQEKELQWVPIPN
CCHHCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]