| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118145
Identifier: 197118145
GI number: 197118145
Start: 2028407
End: 2029195
Strand: Reverse
Name: 197118145
Synonym: Gbem_1760
Alternate gene names: NA
Gene position: 2029195-2028407 (Counterclockwise)
Preceding gene: 197118150
Following gene: 197118143
Centisome position: 43.97
GC content: 53.23
Gene sequence:
>789_bases ATGCAGTCCATCACGCGTGTAAGCGATCACGAGATAGTCACCTTCCAACAGTTGACGGCAAAGGCCAAAGCAGCCGACCT AGTGCTGATTGGCGAGGTCCACGACAAGCCGGCTGCCCATGAACTGCAACTATCGATCATTCGCTCACTCCAAGACCATA AACAACGGATGGCTATCGGACTGGAAGTGATGCAGTCCAATAGCCAGCAGCAACTCGACAACTGGGTCAGCGGCAAAATG ACCGAGGAGCAGTTCCAGCCTGTCTTCGCGCAGAACTGGACCTACGACTGGCGCCTTTACCGCGAAATTTTCTTGTTTGC CCGGGACAACAAGATCCCTTTGGTCGCCTTGAATGTCCCCAGAGAGACAGTGATAAAAGTTTCGCGACAGGGGTACAAGG CATTAACCGAGGAGGAGAGAAAAGGGTTGTCAATCGGAACCAATGCCGATCTCAACAACACGCACACCGAGTTCCTAAAG CGGACGTTCCAGCCGCTTTTCGAAAGTGTATCCAACGGGCGCGTGTTCCAGTACTTCTGCGAGGCTCAGACCTTGCGCAA CAGCGGAATGGCGATGACCGTGGCGCACTACGTGAAACAACAACCGAAGACGAAAATGGTGCTGCTCACGGGGATCTGGC ACGCCGTCAAAAACGCCATCCCTGAGCAGTTGGACCGAAGCGGCAACAAGATGAGCAGTGTAGTGATTATGCCTGAAATC CAGGAGTTCAGCGGCGGAAAGGCAACTACCGACGTAATAGATTATCTTGTCCAACTACCGACTCCGTAA
Upstream 100 bases:
>100_bases ATTTCCTGTTGTCACACGCCCCAGCGGAGATTGCAGATGCTCATCATGCTTCGTACGCCGTTACTATTGCTGTTATGCCT CTTTGGGTCTGTCCAAGCCC
Downstream 100 bases:
>100_bases CAGGAGGAAAGTTTCGCCCTCTATACCTGCCGAAATCAAAACTGTGGGCATTCATGCCGTCGCAACATCCCGTACGGTAG GAGTGCCCAAAGTTTCCGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MQSITRVSDHEIVTFQQLTAKAKAADLVLIGEVHDKPAAHELQLSIIRSLQDHKQRMAIGLEVMQSNSQQQLDNWVSGKM TEEQFQPVFAQNWTYDWRLYREIFLFARDNKIPLVALNVPRETVIKVSRQGYKALTEEERKGLSIGTNADLNNTHTEFLK RTFQPLFESVSNGRVFQYFCEAQTLRNSGMAMTVAHYVKQQPKTKMVLLTGIWHAVKNAIPEQLDRSGNKMSSVVIMPEI QEFSGGKATTDVIDYLVQLPTP
Sequences:
>Translated_262_residues MQSITRVSDHEIVTFQQLTAKAKAADLVLIGEVHDKPAAHELQLSIIRSLQDHKQRMAIGLEVMQSNSQQQLDNWVSGKM TEEQFQPVFAQNWTYDWRLYREIFLFARDNKIPLVALNVPRETVIKVSRQGYKALTEEERKGLSIGTNADLNNTHTEFLK RTFQPLFESVSNGRVFQYFCEAQTLRNSGMAMTVAHYVKQQPKTKMVLLTGIWHAVKNAIPEQLDRSGNKMSSVVIMPEI QEFSGGKATTDVIDYLVQLPTP >Mature_262_residues MQSITRVSDHEIVTFQQLTAKAKAADLVLIGEVHDKPAAHELQLSIIRSLQDHKQRMAIGLEVMQSNSQQQLDNWVSGKM TEEQFQPVFAQNWTYDWRLYREIFLFARDNKIPLVALNVPRETVIKVSRQGYKALTEEERKGLSIGTNADLNNTHTEFLK RTFQPLFESVSNGRVFQYFCEAQTLRNSGMAMTVAHYVKQQPKTKMVLLTGIWHAVKNAIPEQLDRSGNKMSSVVIMPEI QEFSGGKATTDVIDYLVQLPTP
Specific function: Unknown
COG id: COG3016
COG function: function code S; Uncharacterized iron-regulated protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29866; Mature: 29866
Theoretical pI: Translated: 8.45; Mature: 8.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSITRVSDHEIVTFQQLTAKAKAADLVLIGEVHDKPAAHELQLSIIRSLQDHKQRMAIG CCCCCCCCCCCEEHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH LEVMQSNSQQQLDNWVSGKMTEEQFQPVFAQNWTYDWRLYREIFLFARDNKIPLVALNVP HHHHHCCCHHHHHHHHCCCCCHHHHCCHHHCCCCHHHHHHHHHHHEECCCCCCEEEEECC RETVIKVSRQGYKALTEEERKGLSIGTNADLNNTHTEFLKRTFQPLFESVSNGRVFQYFC HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHH EAQTLRNSGMAMTVAHYVKQQPKTKMVLLTGIWHAVKNAIPEQLDRSGNKMSSVVIMPEI HHHHHHCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECH QEFSGGKATTDVIDYLVQLPTP HHCCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MQSITRVSDHEIVTFQQLTAKAKAADLVLIGEVHDKPAAHELQLSIIRSLQDHKQRMAIG CCCCCCCCCCCEEHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH LEVMQSNSQQQLDNWVSGKMTEEQFQPVFAQNWTYDWRLYREIFLFARDNKIPLVALNVP HHHHHCCCHHHHHHHHCCCCCHHHHCCHHHCCCCHHHHHHHHHHHEECCCCCCEEEEECC RETVIKVSRQGYKALTEEERKGLSIGTNADLNNTHTEFLKRTFQPLFESVSNGRVFQYFC HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHH EAQTLRNSGMAMTVAHYVKQQPKTKMVLLTGIWHAVKNAIPEQLDRSGNKMSSVVIMPEI HHHHHHCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECH QEFSGGKATTDVIDYLVQLPTP HHCCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA