Click here to switch to the map view.

The map label for this gene is bphB [H]

Identifier: 197118029

GI number: 197118029

Start: 1906513

End: 1907733

Strand: Direct

Name: bphB [H]

Synonym: Gbem_1642

Alternate gene names: 197118029

Gene position: 1906513-1907733 (Clockwise)

Preceding gene: 197118028

Following gene: 197118034

Centisome position: 41.31

GC content: 61.18

Gene sequence:

>1221_bases
ATGAAGGTGCTAGTTGTCGACGATTCCCGCAACGATCGCAAGATTATCCGCTACAACTTCGAATGGCACGGCTGCGAAGT
CCTGGAGGCCTCCAACGGGAAGCAGGGGCTGGAGCTGGCCGCGGCGGAGAAACCCGACCTGATCATCTCCGACTGCCTGA
TGCCGGTCATGGATGGCTTCCAATTCCTTCACGAAATTAAGAAATTTCAGGACACAAAAACCATCCCCTTCATCTTCTAT
TCCGCCGTCTATACCGGGAGCCGCGAGGCGGAATTGGCGGCTTCCCTCGGAGCTCGCGCTTTCCTGGCAAAACCCATGCG
TCCCGAGGAGCTTTGGGATGAGGTGGGGAGGTTGATGGCTGCGGAGCCGGCCGGCGAGGTGGTGGAGCAAAAGCCGTGGC
CTGAAGAGGAATTCCTCAAGAATTACAGCCAGCTGGTAGCAGGCAAGCTGGAGGAAAAGGTCCGCGAGCTGACCGAAACG
AACGAAAGCCTCCTCCGGCTGAACAGCGAACTGGAGCGCAGGGTGGTGGAGCGGACCTCTCAACTGGAGGCCGCCAACCG
CGAGCTCGACATGTTCAGCTATTCCATTTCCCACGACCTGCGCGCCCCTTTGCGGCACCTGGAGGGGTTCAGCCAGGCGC
TGATCGACGAATACGCCACCAAGCTGAACCACACGGGCAAAGAGTACCTGGAGCGGCTCAGGAAGTCCGCTCGACGTCTG
ACGGACATGATAGACGCGCTGCTGGAACTGTCGCGGCACACCAGGGGGAAGCTGGTCAAGGAGAGCGTGGATATAACCTC
TATTGCCAAGGAGGTAGCGGCTCAACTGGCGCGGTCACAGCCGGAGCGGAAGGTGTCGATCGAGGTGGCGGAGGGGATGA
TGGTGCGCGGGGACACGCGGTTGTTGAAGGTGGTGCTGGAGCAGGTGATCGGCAACGCCTGGAAGTTCACCGAGCCGCGA
GGGGACGAGGCGCTGGTAGAGGTCTTTCCCACCGAGCTTGAAGGGCGTCCCGCCTACGCGGTCAGGGACAACGGGGTCGG
TTTCCAGATGGAGTATGCGGACAAGCTCTTCTCCCCCTTCCAGAGGCTGCACGCCCAAGACGAGTTCCCGGGCCGGGGGA
TCGGGCTTGCCATCGCCAGGAGGATAATCACCCGCCATGGAGGGAAGATCGAGGCGCAGGCCGAACTGGGGAAGGGCGCC
ACCTTCACCTTCAGCGTCTAG

Upstream 100 bases:

>100_bases
GGCCCCGGAGTCGTCTGCTTCGCGGTTGGGGGGAACAAGCGAGACGCGAAAGACGTGCAGTTTCTCCTTAACTACCATCG
CAGGCATCGGGGGGGTACGG

Downstream 100 bases:

>100_bases
CTTTCCTTAAGCACCCGGCCAACCAGTTCCCCATCTTTGGCCCCGGTCACCTGTACCGTTACCTCGCGGTTCACCAGCCC
CTTGCTTTCTTCGATCAGCA

Product: response receiver histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MKVLVVDDSRNDRKIIRYNFEWHGCEVLEASNGKQGLELAAAEKPDLIISDCLMPVMDGFQFLHEIKKFQDTKTIPFIFY
SAVYTGSREAELAASLGARAFLAKPMRPEELWDEVGRLMAAEPAGEVVEQKPWPEEEFLKNYSQLVAGKLEEKVRELTET
NESLLRLNSELERRVVERTSQLEAANRELDMFSYSISHDLRAPLRHLEGFSQALIDEYATKLNHTGKEYLERLRKSARRL
TDMIDALLELSRHTRGKLVKESVDITSIAKEVAAQLARSQPERKVSIEVAEGMMVRGDTRLLKVVLEQVIGNAWKFTEPR
GDEALVEVFPTELEGRPAYAVRDNGVGFQMEYADKLFSPFQRLHAQDEFPGRGIGLAIARRIITRHGGKIEAQAELGKGA
TFTFSV

Sequences:

>Translated_406_residues
MKVLVVDDSRNDRKIIRYNFEWHGCEVLEASNGKQGLELAAAEKPDLIISDCLMPVMDGFQFLHEIKKFQDTKTIPFIFY
SAVYTGSREAELAASLGARAFLAKPMRPEELWDEVGRLMAAEPAGEVVEQKPWPEEEFLKNYSQLVAGKLEEKVRELTET
NESLLRLNSELERRVVERTSQLEAANRELDMFSYSISHDLRAPLRHLEGFSQALIDEYATKLNHTGKEYLERLRKSARRL
TDMIDALLELSRHTRGKLVKESVDITSIAKEVAAQLARSQPERKVSIEVAEGMMVRGDTRLLKVVLEQVIGNAWKFTEPR
GDEALVEVFPTELEGRPAYAVRDNGVGFQMEYADKLFSPFQRLHAQDEFPGRGIGLAIARRIITRHGGKIEAQAELGKGA
TFTFSV
>Mature_406_residues
MKVLVVDDSRNDRKIIRYNFEWHGCEVLEASNGKQGLELAAAEKPDLIISDCLMPVMDGFQFLHEIKKFQDTKTIPFIFY
SAVYTGSREAELAASLGARAFLAKPMRPEELWDEVGRLMAAEPAGEVVEQKPWPEEEFLKNYSQLVAGKLEEKVRELTET
NESLLRLNSELERRVVERTSQLEAANRELDMFSYSISHDLRAPLRHLEGFSQALIDEYATKLNHTGKEYLERLRKSARRL
TDMIDALLELSRHTRGKLVKESVDITSIAKEVAAQLARSQPERKVSIEVAEGMMVRGDTRLLKVVLEQVIGNAWKFTEPR
GDEALVEVFPTELEGRPAYAVRDNGVGFQMEYADKLFSPFQRLHAQDEFPGRGIGLAIARRIITRHGGKIEAQAELGKGA
TFTFSV

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=247, Percent_Identity=29.9595141700405, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1789149, Length=276, Percent_Identity=27.1739130434783, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786600, Length=264, Percent_Identity=26.5151515151515, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788549, Length=213, Percent_Identity=29.1079812206573, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790436, Length=221, Percent_Identity=24.4343891402715, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693157, Length=246, Percent_Identity=27.6422764227642, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1786912, Length=296, Percent_Identity=27.7027027027027, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1790346, Length=205, Percent_Identity=30.2439024390244, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788713, Length=226, Percent_Identity=22.5663716814159, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 45998; Mature: 45998

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLVVDDSRNDRKIIRYNFEWHGCEVLEASNGKQGLELAAAEKPDLIISDCLMPVMDGF
CEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCEECCCCCCCHHHHHHHHHHHHHH
QFLHEIKKFQDTKTIPFIFYSAVYTGSREAELAASLGARAFLAKPMRPEELWDEVGRLMA
HHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHH
AEPAGEVVEQKPWPEEEFLKNYSQLVAGKLEEKVRELTETNESLLRLNSELERRVVERTS
CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLEAANRELDMFSYSISHDLRAPLRHLEGFSQALIDEYATKLNHTGKEYLERLRKSARRL
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
TDMIDALLELSRHTRGKLVKESVDITSIAKEVAAQLARSQPERKVSIEVAEGMMVRGDTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCHHH
LLKVVLEQVIGNAWKFTEPRGDEALVEVFPTELEGRPAYAVRDNGVGFQMEYADKLFSPF
HHHHHHHHHHCCCEECCCCCCCCHHHHHCCCCCCCCCCEEEECCCCCEEHHHHHHHHHHH
QRLHAQDEFPGRGIGLAIARRIITRHGGKIEAQAELGKGATFTFSV
HHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHCCCCCEEEEEC
>Mature Secondary Structure
MKVLVVDDSRNDRKIIRYNFEWHGCEVLEASNGKQGLELAAAEKPDLIISDCLMPVMDGF
CEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCEECCCCCCCHHHHHHHHHHHHHH
QFLHEIKKFQDTKTIPFIFYSAVYTGSREAELAASLGARAFLAKPMRPEELWDEVGRLMA
HHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHH
AEPAGEVVEQKPWPEEEFLKNYSQLVAGKLEEKVRELTETNESLLRLNSELERRVVERTS
CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLEAANRELDMFSYSISHDLRAPLRHLEGFSQALIDEYATKLNHTGKEYLERLRKSARRL
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
TDMIDALLELSRHTRGKLVKESVDITSIAKEVAAQLARSQPERKVSIEVAEGMMVRGDTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCHHH
LLKVVLEQVIGNAWKFTEPRGDEALVEVFPTELEGRPAYAVRDNGVGFQMEYADKLFSPF
HHHHHHHHHHCCCEECCCCCCCCHHHHHCCCCCCCCCCEEEECCCCCEEHHHHHHHHHHH
QRLHAQDEFPGRGIGLAIARRIITRHGGKIEAQAELGKGATFTFSV
HHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]