| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is 197118028
Identifier: 197118028
GI number: 197118028
Start: 1904992
End: 1906251
Strand: Direct
Name: 197118028
Synonym: Gbem_1641
Alternate gene names: NA
Gene position: 1904992-1906251 (Clockwise)
Preceding gene: 197118027
Following gene: 197118029
Centisome position: 41.28
GC content: 63.25
Gene sequence:
>1260_bases TTGGCAAGTGTTGAAAACAGGCAGGTAGCAGCAGCGAGGCTCTCGCAGGGCGATTTCCAGGCGCTACCACTCGACGAGAA GGGGAAGTATCTGAAGACGGCGCCGGCACGGGAGAAGATGGAGCTGATCATCGCGGACCCGAACGCGAAGAGGGTGGCCG CCACCCTGGAGCCCCAGGAGTTTTTCTGGCTGGTCAAGGAGGTGGGCGAGGCCGACGCGGTGGAACTGCTGCAATTAGCG TCCGCCGACCAGTGCATTTTCATCCTGGACATGGAGGCGTGGGAAGGGTGGACCTTCTCCGAGGAGCAGGTGTGTCACTG GCTGGAGAAGTTCATGGAAGGTGGCGAGCCGCGGGTTCACGAGCTCTTGCAGCACCTCGATTTCGACCTGCTGCAGCTTT TCCTGAGCCGTGAGATCGAGGTCGGCGGGGGGGTCGGCGACCAGTCCAACGACCAGGAACGCCTCGCCGAATACGATCAC ACCTTCGACGGCGTCTTCATGATCAACTTCAAGAACCCCAAGCACAGCCAGCTGGTCGGTTCCTTCCTGTCCATGCTGAT CAAGCTGGACAATTCCCTCTACACGGCACTCATGGAAGGGGCCAAGGGGGAGGTGGACCTGGAGTTGGAGGAGCAGTGCC AGAGGTTCCGCACCGGCAGGCTTCAGGACCTCGGCTTCCCCCCGCTGGACGAGGCTCTTTCGATCTACGCCCGGGTGAAT CCGGAGCATTTCCAACTGGAAGGGGGGAAGGAGTTGAGCCCGGCAGGGGAGGGGGGGGAACTGGTGCCCGTGAGCGCCGA CGAGGGGACCTTCTTTTCCCGCGCGCTCGCCCTCGCCGCCACGCCGACGCTCTACCAGGAGCTGAACTACCTGGTCAACA GCGCGCTGGTCGCGGAAGGAAACGCGTTCCACGAGCCGGAAGCGATGCTGGCCATACTGCGCCGGGTGAGCGGCTATCTC AACATTGCGCTGGAGAGGCTGGCGCCGGCGGACGAGCAGCGGGCCGCCCGGATACTGGTAAGCGAGGAGTTGAAGCGGCT GTTCCACCTGGGCTACAGCATCGTCCTGCAGTTGAAATTCAAGGCCCGGGAGGTCGAGACGACCGACTACGCCTCCGGGA AGCTCCTTTCGGGGCTTAAGGCCAAGCGCCCACGCTTTTACCGCGGGCTGGACCCGGACGGCGTCGACGGCTACCGCGAG TTCAGGGATCTTTCCGACGTCGAGCGCGTGGCCGGTCTTCTGGCCCAGCTAAAGCCGTAA
Upstream 100 bases:
>100_bases CGCAAAGACGCCAAGAAAAGCTGAAAGCAATTTATTGTTTTTACTTTGCGTGCTTTGCGGCTTTGCGTGACACGCTTATA AACATAAAAGGAGTTGCATA
Downstream 100 bases:
>100_bases ACTCCTAGGGGGACTGGCTCCGATAGGTGCCTGTCCCCCTTGCCCCCCTTGTTCCCACTTCTTCCCCCTTAGACAGTCCC GCCTCAATCCGCCCCTTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 419; Mature: 418
Protein sequence:
>419_residues MASVENRQVAAARLSQGDFQALPLDEKGKYLKTAPAREKMELIIADPNAKRVAATLEPQEFFWLVKEVGEADAVELLQLA SADQCIFILDMEAWEGWTFSEEQVCHWLEKFMEGGEPRVHELLQHLDFDLLQLFLSREIEVGGGVGDQSNDQERLAEYDH TFDGVFMINFKNPKHSQLVGSFLSMLIKLDNSLYTALMEGAKGEVDLELEEQCQRFRTGRLQDLGFPPLDEALSIYARVN PEHFQLEGGKELSPAGEGGELVPVSADEGTFFSRALALAATPTLYQELNYLVNSALVAEGNAFHEPEAMLAILRRVSGYL NIALERLAPADEQRAARILVSEELKRLFHLGYSIVLQLKFKAREVETTDYASGKLLSGLKAKRPRFYRGLDPDGVDGYRE FRDLSDVERVAGLLAQLKP
Sequences:
>Translated_419_residues MASVENRQVAAARLSQGDFQALPLDEKGKYLKTAPAREKMELIIADPNAKRVAATLEPQEFFWLVKEVGEADAVELLQLA SADQCIFILDMEAWEGWTFSEEQVCHWLEKFMEGGEPRVHELLQHLDFDLLQLFLSREIEVGGGVGDQSNDQERLAEYDH TFDGVFMINFKNPKHSQLVGSFLSMLIKLDNSLYTALMEGAKGEVDLELEEQCQRFRTGRLQDLGFPPLDEALSIYARVN PEHFQLEGGKELSPAGEGGELVPVSADEGTFFSRALALAATPTLYQELNYLVNSALVAEGNAFHEPEAMLAILRRVSGYL NIALERLAPADEQRAARILVSEELKRLFHLGYSIVLQLKFKAREVETTDYASGKLLSGLKAKRPRFYRGLDPDGVDGYRE FRDLSDVERVAGLLAQLKP >Mature_418_residues ASVENRQVAAARLSQGDFQALPLDEKGKYLKTAPAREKMELIIADPNAKRVAATLEPQEFFWLVKEVGEADAVELLQLAS ADQCIFILDMEAWEGWTFSEEQVCHWLEKFMEGGEPRVHELLQHLDFDLLQLFLSREIEVGGGVGDQSNDQERLAEYDHT FDGVFMINFKNPKHSQLVGSFLSMLIKLDNSLYTALMEGAKGEVDLELEEQCQRFRTGRLQDLGFPPLDEALSIYARVNP EHFQLEGGKELSPAGEGGELVPVSADEGTFFSRALALAATPTLYQELNYLVNSALVAEGNAFHEPEAMLAILRRVSGYLN IALERLAPADEQRAARILVSEELKRLFHLGYSIVLQLKFKAREVETTDYASGKLLSGLKAKRPRFYRGLDPDGVDGYREF RDLSDVERVAGLLAQLKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46954; Mature: 46823
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASVENRQVAAARLSQGDFQALPLDEKGKYLKTAPAREKMELIIADPNAKRVAATLEPQE CCCCCCCHHHHHHHCCCCCEECCCCCCCCEEECCCCCCCEEEEEECCCCCEEEEECCHHH FFWLVKEVGEADAVELLQLASADQCIFILDMEAWEGWTFSEEQVCHWLEKFMEGGEPRVH HHHHHHHHCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHH ELLQHLDFDLLQLFLSREIEVGGGVGDQSNDQERLAEYDHTFDGVFMINFKNPKHSQLVG HHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHH SFLSMLIKLDNSLYTALMEGAKGEVDLELEEQCQRFRTGRLQDLGFPPLDEALSIYARVN HHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC PEHFQLEGGKELSPAGEGGELVPVSADEGTFFSRALALAATPTLYQELNYLVNSALVAEG CCEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC NAFHEPEAMLAILRRVSGYLNIALERLAPADEQRAARILVSEELKRLFHLGYSIVLQLKF CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHEEEEEEE KAREVETTDYASGKLLSGLKAKRPRFYRGLDPDGVDGYREFRDLSDVERVAGLLAQLKP HHCCCCCCCCCCCHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ASVENRQVAAARLSQGDFQALPLDEKGKYLKTAPAREKMELIIADPNAKRVAATLEPQE CCCCCCHHHHHHHCCCCCEECCCCCCCCEEECCCCCCCEEEEEECCCCCEEEEECCHHH FFWLVKEVGEADAVELLQLASADQCIFILDMEAWEGWTFSEEQVCHWLEKFMEGGEPRVH HHHHHHHHCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHH ELLQHLDFDLLQLFLSREIEVGGGVGDQSNDQERLAEYDHTFDGVFMINFKNPKHSQLVG HHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHH SFLSMLIKLDNSLYTALMEGAKGEVDLELEEQCQRFRTGRLQDLGFPPLDEALSIYARVN HHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC PEHFQLEGGKELSPAGEGGELVPVSADEGTFFSRALALAATPTLYQELNYLVNSALVAEG CCEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC NAFHEPEAMLAILRRVSGYLNIALERLAPADEQRAARILVSEELKRLFHLGYSIVLQLKF CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHEEEEEEE KAREVETTDYASGKLLSGLKAKRPRFYRGLDPDGVDGYREFRDLSDVERVAGLLAQLKP HHCCCCCCCCCCCHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA