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The map label for this gene is kdsD [H]

Identifier: 197117989

GI number: 197117989

Start: 1857426

End: 1858394

Strand: Direct

Name: kdsD [H]

Synonym: Gbem_1602

Alternate gene names: 197117989

Gene position: 1857426-1858394 (Clockwise)

Preceding gene: 197117988

Following gene: 197117990

Centisome position: 40.25

GC content: 62.64

Gene sequence:

>969_bases
TTGATAATAGAAGAAGCGAAGAGGGTGATACGGGTCGAGGCTGAGGCTCTTTTGAACCTTGAGGCGTCGATCAACGGAGC
GTTCGAACAAGCGGTGCAGATGATCCTGAACAGCGAGACCGGCCGCGTCGTGGTGACCGGCATGGGCAAGTCCGGCCTCA
TCGGCCAGAAGATCGCCTCCACCATGGCTTCGACGGGGACTCCCGCGTTTTTCCTGCACCCGGCGGAAGGGATCCACGGC
GACCTCGGCATGATCATGAAGGGCGACGTCGTCATCGCCATCTCCAACTCCGGCGAGACCGACGAGGTGGTGAAAATCCT
CCCCATCATCAAGCGGCTGGGCGCATCGCTCATCGCCATGGCCGGCAACCCCACCTCCACCCTCGCCAAGAGCGGCGACA
TCTTTCTCGACATATCGGTAAAGGAAGAGGCGTGCCCGCTCGGGCTTGCCCCCACGGCATCGACGACCGTCACCCTCGCC
ATGGGGGATGCCATCGCGGTGGCGCTTCTGGTCAGCCGCGGCTTCAAGGCCGAAGACTTCGCCATGTTCCACCCCGGCGG
CGCGCTGGGGCGCAGGCTCCTATTGAGGGTCCAGGACATCATGCATTCCGGTGAGGCGCTCCCCCTGGTCAACGAAAAGA
CCCTGATGCGGGAGGCGCTTTTCACCATCACCTCCAAAGGTCTCGGCATCACCGGCGTCACCTCCGACGACGGCGCCCTC
ATAGGCGTCATCACCGACGGCGATCTGCGGCGTGCGCTCGGCAAGGGGCTCGACATCATCAACCTCCCTGCCGCGGAGCT
GATGAAAGCCGGCGCCAAGCGGATTAATCGCGAGGAGCTTGCGGCGCGGGCCCTGCAGCAGATGGAGCAATACTCCATCA
CCTCGCTCTTTGTCTTCGACGATGATAAGGCCAAGGCCCCGGTAGGTATCGTCCATCTGCACGACCTCCTGAAGGCCGGC
ATAGCATAA

Upstream 100 bases:

>100_bases
CTTTGCGGTCTTAGCGTCTTTGCGTGAGGCAGAATCTGAAAAGCTTTAAAGATTTTCTCTGCGGTCTTTGCGGCGTGAGA
CCGCCTTTAAGGAGTTGAAA

Downstream 100 bases:

>100_bases
CCCGGTCACGCAAAGCCGCAAAGACGCAAAGAAAGGCTGAAGCGCCAAGCAGAAAGCGTTTAAAGGTTTTCTTTGCGGTC
TTGGCGTCTTTGCGTGAGAC

Product: arabinose-5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MIIEEAKRVIRVEAEALLNLEASINGAFEQAVQMILNSETGRVVVTGMGKSGLIGQKIASTMASTGTPAFFLHPAEGIHG
DLGMIMKGDVVIAISNSGETDEVVKILPIIKRLGASLIAMAGNPTSTLAKSGDIFLDISVKEEACPLGLAPTASTTVTLA
MGDAIAVALLVSRGFKAEDFAMFHPGGALGRRLLLRVQDIMHSGEALPLVNEKTLMREALFTITSKGLGITGVTSDDGAL
IGVITDGDLRRALGKGLDIINLPAAELMKAGAKRINREELAARALQQMEQYSITSLFVFDDDKAKAPVGIVHLHDLLKAG
IA

Sequences:

>Translated_322_residues
MIIEEAKRVIRVEAEALLNLEASINGAFEQAVQMILNSETGRVVVTGMGKSGLIGQKIASTMASTGTPAFFLHPAEGIHG
DLGMIMKGDVVIAISNSGETDEVVKILPIIKRLGASLIAMAGNPTSTLAKSGDIFLDISVKEEACPLGLAPTASTTVTLA
MGDAIAVALLVSRGFKAEDFAMFHPGGALGRRLLLRVQDIMHSGEALPLVNEKTLMREALFTITSKGLGITGVTSDDGAL
IGVITDGDLRRALGKGLDIINLPAAELMKAGAKRINREELAARALQQMEQYSITSLFVFDDDKAKAPVGIVHLHDLLKAG
IA
>Mature_322_residues
MIIEEAKRVIRVEAEALLNLEASINGAFEQAVQMILNSETGRVVVTGMGKSGLIGQKIASTMASTGTPAFFLHPAEGIHG
DLGMIMKGDVVIAISNSGETDEVVKILPIIKRLGASLIAMAGNPTSTLAKSGDIFLDISVKEEACPLGLAPTASTTVTLA
MGDAIAVALLVSRGFKAEDFAMFHPGGALGRRLLLRVQDIMHSGEALPLVNEKTLMREALFTITSKGLGITGVTSDDGAL
IGVITDGDLRRALGKGLDIINLPAAELMKAGAKRINREELAARALQQMEQYSITSLFVFDDDKAKAPVGIVHLHDLLKAG
IA

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=318, Percent_Identity=50.9433962264151, Blast_Score=324, Evalue=6e-90,
Organism=Escherichia coli, GI87082151, Length=320, Percent_Identity=42.1875, Blast_Score=233, Evalue=1e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 33848; Mature: 33848

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIEEAKRVIRVEAEALLNLEASINGAFEQAVQMILNSETGRVVVTGMGKSGLIGQKIAS
CCHHHHHHHHHHHHHHHEEEHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH
TMASTGTPAFFLHPAEGIHGDLGMIMKGDVVIAISNSGETDEVVKILPIIKRLGASLIAM
HHHCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
AGNPTSTLAKSGDIFLDISVKEEACPLGLAPTASTTVTLAMGDAIAVALLVSRGFKAEDF
CCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCCCE
AMFHPGGALGRRLLLRVQDIMHSGEALPLVNEKTLMREALFTITSKGLGITGVTSDDGAL
EEECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCEE
IGVITDGDLRRALGKGLDIINLPAAELMKAGAKRINREELAARALQQMEQYSITSLFVFD
EEEEECCHHHHHHHCCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEE
DDKAKAPVGIVHLHDLLKAGIA
CCCCCCCEEHHHHHHHHHHCCC
>Mature Secondary Structure
MIIEEAKRVIRVEAEALLNLEASINGAFEQAVQMILNSETGRVVVTGMGKSGLIGQKIAS
CCHHHHHHHHHHHHHHHEEEHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH
TMASTGTPAFFLHPAEGIHGDLGMIMKGDVVIAISNSGETDEVVKILPIIKRLGASLIAM
HHHCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
AGNPTSTLAKSGDIFLDISVKEEACPLGLAPTASTTVTLAMGDAIAVALLVSRGFKAEDF
CCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCCCE
AMFHPGGALGRRLLLRVQDIMHSGEALPLVNEKTLMREALFTITSKGLGITGVTSDDGAL
EEECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCEE
IGVITDGDLRRALGKGLDIINLPAAELMKAGAKRINREELAARALQQMEQYSITSLFVFD
EEEEECCHHHHHHHCCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEE
DDKAKAPVGIVHLHDLLKAGIA
CCCCCCCEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]