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The map label for this gene is yuxH [H]

Identifier: 197117985

GI number: 197117985

Start: 1851986

End: 1853221

Strand: Direct

Name: yuxH [H]

Synonym: Gbem_1598

Alternate gene names: 197117985

Gene position: 1851986-1853221 (Clockwise)

Preceding gene: 197117984

Following gene: 308535252

Centisome position: 40.13

GC content: 60.84

Gene sequence:

>1236_bases
ATGAGCGAAGAAAAATTCTTTCTCGGACGACAGCCGATACTCGACCGGACCCAGAAGATAGTCGGCTTCGAGCTCTTGTT
CCGTTCCGCGGAGAGCTTGCAGTCGGCGAACTTTCTCGACGTCCAGGTGGCGAGCGCCAGCGTCATCGTGGGAGCCCTGG
CCGAGTTTGGCATCGAGGACGTCCTGGGGAGGCATCGCGGCTTTTTCAACGTCACCCGCGAGATGCTGATGAGCGACGCG
GTGGAACTTTTGCCCAAGGACCGCGTGGTGATCGAACTTCTGGAAACCATCGTGGTGGACCGGGACGTGGTGGAACGCTG
CCGCACCCTCAAGTCGCTGGGCTTCACCCTGGCCCTCGACGACCATGTCTACTCCGCCGACTTCCACGAGATCTACGAGG
CGATCGACATCGTCAAGGTCGACGTGCTGGAGACGCCGGCCGCCGCTCTTCCCGAGATGCTGGAGCGGCTCAATCCCTGG
CCCTTCACCCTTTTGGCCGAGAAGGTGGAGACCGCTGAGCAGTACCGCTTCTGCTCGCAGCTGGGCTTCCATCTCTTCCA
GGGGTACTACTTCGCCCGTCCCGTGGTGCTGCGGCAGAACAAGATCGACATCGCGAAGATCGCCATGCTGCGGCTGATGC
AGCAGGTCATGGCCGACACGGAGCTGGAGGAGATCGAGGAGACCTTCAAGCAGAACCCCGGGCTCACCTATAACCTGCTA
AGGCTGGTGAATTCGGTTGCCATCGGCCTCAGGGTGCGCATCAAGACCCTGCGCCACGCCCTCATGGTGCTGGGGATGGA
GCAGTTGAAGCGCTGGATCACCCTGGCCCTTTACGCCAGCAACGACAGCAACGGCGTGCACAGCCCGCTTCTGGAGATGG
CCGCGACGCGCGGCAAACTGATGGAGCTGCTGGTGCTGGCCCTCAAGGGGCGCGCCGGGAGGGAGCTTGCCGACCAGGCC
TTCATGGTCGGGATCCTCTCGCTCATCGACGTACTCTTCGACGACTCCATGAACGAGCTGGTGGGGAAACTGAATCTAGT
GGAGAACGTAAAGTCGGCCCTCCTATCATGCGAAGGCGAACTGGGGGGACTACTGTTACTGGCCCAGAGGCTGGAAGAGG
CTGACTTCGAAGGGGTGAACGAACAACTGGAAGAAAGCGGCCTCGATCTGGATCAGCTTCTTTCCTGCCAGTTAGAGACC
ATCGCCTGGTCCGACAGCCTCTCCGCATCTCTCTAA

Upstream 100 bases:

>100_bases
GGGGGGTCGACCTGGTGCGTCCCCTCGACGCCATCAGCCGCGAAGTCCTGAGGCTTTGCGCGTGAACGTTGAACGTTGAA
CAGCTTTTTCGGGGATATCC

Downstream 100 bases:

>100_bases
TTTCACACCTTGACACAACCCTTTCTTTTGATGTAACTTGTTTCGTCCCGCCAGACAAGGGACGGAGCCGGCAGTTCAGG
CTGCGCTCCGCCGGCTAAAG

Product: cyclic diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MSEEKFFLGRQPILDRTQKIVGFELLFRSAESLQSANFLDVQVASASVIVGALAEFGIEDVLGRHRGFFNVTREMLMSDA
VELLPKDRVVIELLETIVVDRDVVERCRTLKSLGFTLALDDHVYSADFHEIYEAIDIVKVDVLETPAAALPEMLERLNPW
PFTLLAEKVETAEQYRFCSQLGFHLFQGYYFARPVVLRQNKIDIAKIAMLRLMQQVMADTELEEIEETFKQNPGLTYNLL
RLVNSVAIGLRVRIKTLRHALMVLGMEQLKRWITLALYASNDSNGVHSPLLEMAATRGKLMELLVLALKGRAGRELADQA
FMVGILSLIDVLFDDSMNELVGKLNLVENVKSALLSCEGELGGLLLLAQRLEEADFEGVNEQLEESGLDLDQLLSCQLET
IAWSDSLSASL

Sequences:

>Translated_411_residues
MSEEKFFLGRQPILDRTQKIVGFELLFRSAESLQSANFLDVQVASASVIVGALAEFGIEDVLGRHRGFFNVTREMLMSDA
VELLPKDRVVIELLETIVVDRDVVERCRTLKSLGFTLALDDHVYSADFHEIYEAIDIVKVDVLETPAAALPEMLERLNPW
PFTLLAEKVETAEQYRFCSQLGFHLFQGYYFARPVVLRQNKIDIAKIAMLRLMQQVMADTELEEIEETFKQNPGLTYNLL
RLVNSVAIGLRVRIKTLRHALMVLGMEQLKRWITLALYASNDSNGVHSPLLEMAATRGKLMELLVLALKGRAGRELADQA
FMVGILSLIDVLFDDSMNELVGKLNLVENVKSALLSCEGELGGLLLLAQRLEEADFEGVNEQLEESGLDLDQLLSCQLET
IAWSDSLSASL
>Mature_410_residues
SEEKFFLGRQPILDRTQKIVGFELLFRSAESLQSANFLDVQVASASVIVGALAEFGIEDVLGRHRGFFNVTREMLMSDAV
ELLPKDRVVIELLETIVVDRDVVERCRTLKSLGFTLALDDHVYSADFHEIYEAIDIVKVDVLETPAAALPEMLERLNPWP
FTLLAEKVETAEQYRFCSQLGFHLFQGYYFARPVVLRQNKIDIAKIAMLRLMQQVMADTELEEIEETFKQNPGLTYNLLR
LVNSVAIGLRVRIKTLRHALMVLGMEQLKRWITLALYASNDSNGVHSPLLEMAATRGKLMELLVLALKGRAGRELADQAF
MVGILSLIDVLFDDSMNELVGKLNLVENVKSALLSCEGELGGLLLLAQRLEEADFEGVNEQLEESGLDLDQLLSCQLETI
AWSDSLSASL

Specific function: Unknown

COG id: COG3434

COG function: function code T; Predicted signal transduction protein containing EAL and modified HD-GYP domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014408
- InterPro:   IPR001633
- InterPro:   IPR013976 [H]

Pfam domain/function: PF00563 EAL; PF08668 HDOD [H]

EC number: NA

Molecular weight: Translated: 46123; Mature: 45992

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEKFFLGRQPILDRTQKIVGFELLFRSAESLQSANFLDVQVASASVIVGALAEFGIED
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCHHH
VLGRHRGFFNVTREMLMSDAVELLPKDRVVIELLETIVVDRDVVERCRTLKSLGFTLALD
HHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEC
DHVYSADFHEIYEAIDIVKVDVLETPAAALPEMLERLNPWPFTLLAEKVETAEQYRFCSQ
CCHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LGFHLFQGYYFARPVVLRQNKIDIAKIAMLRLMQQVMADTELEEIEETFKQNPGLTYNLL
HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHH
RLVNSVAIGLRVRIKTLRHALMVLGMEQLKRWITLALYASNDSNGVHSPLLEMAATRGKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHH
MELLVLALKGRAGRELADQAFMVGILSLIDVLFDDSMNELVGKLNLVENVKSALLSCEGE
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
LGGLLLLAQRLEEADFEGVNEQLEESGLDLDQLLSCQLETIAWSDSLSASL
HHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHEECCCCCCCC
>Mature Secondary Structure 
SEEKFFLGRQPILDRTQKIVGFELLFRSAESLQSANFLDVQVASASVIVGALAEFGIED
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCHHH
VLGRHRGFFNVTREMLMSDAVELLPKDRVVIELLETIVVDRDVVERCRTLKSLGFTLALD
HHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEC
DHVYSADFHEIYEAIDIVKVDVLETPAAALPEMLERLNPWPFTLLAEKVETAEQYRFCSQ
CCHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LGFHLFQGYYFARPVVLRQNKIDIAKIAMLRLMQQVMADTELEEIEETFKQNPGLTYNLL
HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHH
RLVNSVAIGLRVRIKTLRHALMVLGMEQLKRWITLALYASNDSNGVHSPLLEMAATRGKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHH
MELLVLALKGRAGRELADQAFMVGILSLIDVLFDDSMNELVGKLNLVENVKSALLSCEGE
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
LGGLLLLAQRLEEADFEGVNEQLEESGLDLDQLLSCQLETIAWSDSLSASL
HHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2507523; 9274030; 9384377; 1943994 [H]