| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117903
Identifier: 197117903
GI number: 197117903
Start: 1754127
End: 1755344
Strand: Reverse
Name: 197117903
Synonym: Gbem_1516
Alternate gene names: NA
Gene position: 1755344-1754127 (Counterclockwise)
Preceding gene: 197117904
Following gene: 197117902
Centisome position: 38.03
GC content: 61.99
Gene sequence:
>1218_bases ATGCCACACCGGGTCTACCTACCAGAACCAAGCGACGCGGAACTCCTCAAAGAGCTCCTGGGGGAGGTGCACGCGTACCT GCCGCTTTTGGACCGGGGAGAGATGCGCCGCTTCCTCAACGGGCTTAAGCTCGAAGTCGAAGAAGAGTTGGGAGAGTTGC GCAACGCTTCCGGCGAGGAGGAGCAGCTTCTCGAGCGGGTGCGCCGCGAGTCCGACTACGGCCGGCTCTTCCAGATCCAC GAGGAACTGAACCGGATCGAGATGGAGCGTTTCCTCTCCTTCTATTCGGTCACCGCGCTGCACGAGAACTGCACCAGTTA CCGCGATGCCCTGGCCGACCGCGCCCTTCAACTGGTAATGGAGGAGATGGGCACCCCCCCGCCGGTCCCATTCGCCCTGA TCAGCATGGGAAGCGACGGGCGGGAGGAGCAGACCCTCATCACCGACCAGGACTACCTGATCGTCTACGGCGACGAGGGA GGGGAAGAGGCGGACGCCTGGTTCAGGCAGTACTCCGAGATCCTCGTGGAGCGGCTGGCGGAGATTGGTTTCAAGAAATG CACCGGCGGCATCATGCCCTGCAACGACAATTGGCGCGGTTCGCTGTCGCAGTGGCAGCGGCGGCTTCTGGGGATAGTCC GCTACGAGACCGAGGACTACGGCAAAAACCTGATGGACCTGATCGTACTTTCCGACGCCCGCTTCGTCGCCGGAGACGGC GAGCTCGCCGGAGTCCTGGTAAGCCGGATCCGCTCGCTTTTACAGGACTACTTCATGGCGCTTTGGGGTATGGCCAAGGC GGCCACCGAGATGCGGCTGGCACTAGGGTTTCTGAAGCGCTTCTGGACCGAGGGAAGCGGCGAGCACAAGGGGTGCTTCA ACCTGAAGCTCCTCGCCTGGGCGCCGCTGGTGATGAACGTAAGGATTCTCGCCATCAACCAGGGGATCCCCGCCACCTCG ACGGTGCGGCGCATCGAGCTTTTGGAGCGCGAGCACAGCTTTTCCGCGGAGAGTGCGCGCGGGCTTATCGAGGCGTACCG GATCCTCACCAAACACCGCATCCTGCTCCAGGTCAAGGTGATCAAGGGGATTCAGGACGACGCCTACTACCTGAACCCCT ACTCGCTTCCGGCCGACGAGCGGGAGAGGATCAGGCAGGCGCTTCTGATGATAGAGGACCTGCAGAAGACCATCCACACC AACTTCTCCATAGTTTAG
Upstream 100 bases:
>100_bases TTTTATACCTAGCCATCCGATCCGCTGCAAAACAGTTTTACATCATAGTTTTTTTCTGTAGAATCAACGCCACGATCTCA TTTGAAAGCAGGCGGATAGC
Downstream 100 bases:
>100_bases ATCCTTGCCCCTGCCCCCGCCGGGGCGGCGGCAAGGAACGGAGGCGCCATGAGCCAGCCGGAAAAAAACTATCAGGTCAA CCTGTTGCGCCCGAAGCAAG
Product: nucleotidyltransferase
Products: NA
Alternate protein names: Nucleotidyltransferase; Signal-Transduction Protein; Signal Transduction Protein; Signal Transduction Protein With CBS Domains; Signal-Transduction Protein With CBS Domains; Nucleotidyltransferase Family; CBS Domain Protein; Signal Protein; Inosine-5-Monophosphate Dehydrogenase; Nucleotidyltransferase Domain Family Protein; DNA Polymerase III Subunit Epsilon; Endonuclease/Nucleotidyltransferase; Multidomain-Containing Protein; Cyclic Nucleotide-Regulated Nucleotidyltransferase; Methyl-Accepting Chemotaxis Protein A; Nucleotidyltransferases
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MPHRVYLPEPSDAELLKELLGEVHAYLPLLDRGEMRRFLNGLKLEVEEELGELRNASGEEEQLLERVRRESDYGRLFQIH EELNRIEMERFLSFYSVTALHENCTSYRDALADRALQLVMEEMGTPPPVPFALISMGSDGREEQTLITDQDYLIVYGDEG GEEADAWFRQYSEILVERLAEIGFKKCTGGIMPCNDNWRGSLSQWQRRLLGIVRYETEDYGKNLMDLIVLSDARFVAGDG ELAGVLVSRIRSLLQDYFMALWGMAKAATEMRLALGFLKRFWTEGSGEHKGCFNLKLLAWAPLVMNVRILAINQGIPATS TVRRIELLEREHSFSAESARGLIEAYRILTKHRILLQVKVIKGIQDDAYYLNPYSLPADERERIRQALLMIEDLQKTIHT NFSIV
Sequences:
>Translated_405_residues MPHRVYLPEPSDAELLKELLGEVHAYLPLLDRGEMRRFLNGLKLEVEEELGELRNASGEEEQLLERVRRESDYGRLFQIH EELNRIEMERFLSFYSVTALHENCTSYRDALADRALQLVMEEMGTPPPVPFALISMGSDGREEQTLITDQDYLIVYGDEG GEEADAWFRQYSEILVERLAEIGFKKCTGGIMPCNDNWRGSLSQWQRRLLGIVRYETEDYGKNLMDLIVLSDARFVAGDG ELAGVLVSRIRSLLQDYFMALWGMAKAATEMRLALGFLKRFWTEGSGEHKGCFNLKLLAWAPLVMNVRILAINQGIPATS TVRRIELLEREHSFSAESARGLIEAYRILTKHRILLQVKVIKGIQDDAYYLNPYSLPADERERIRQALLMIEDLQKTIHT NFSIV >Mature_404_residues PHRVYLPEPSDAELLKELLGEVHAYLPLLDRGEMRRFLNGLKLEVEEELGELRNASGEEEQLLERVRRESDYGRLFQIHE ELNRIEMERFLSFYSVTALHENCTSYRDALADRALQLVMEEMGTPPPVPFALISMGSDGREEQTLITDQDYLIVYGDEGG EEADAWFRQYSEILVERLAEIGFKKCTGGIMPCNDNWRGSLSQWQRRLLGIVRYETEDYGKNLMDLIVLSDARFVAGDGE LAGVLVSRIRSLLQDYFMALWGMAKAATEMRLALGFLKRFWTEGSGEHKGCFNLKLLAWAPLVMNVRILAINQGIPATST VRRIELLEREHSFSAESARGLIEAYRILTKHRILLQVKVIKGIQDDAYYLNPYSLPADERERIRQALLMIEDLQKTIHTN FSIV
Specific function: Unknown
COG id: COG2905
COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46509; Mature: 46378
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHRVYLPEPSDAELLKELLGEVHAYLPLLDRGEMRRFLNGLKLEVEEELGELRNASGEE CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEHHHHHHHHHCCCCCH EQLLERVRRESDYGRLFQIHEELNRIEMERFLSFYSVTALHENCTSYRDALADRALQLVM HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEMGTPPPVPFALISMGSDGREEQTLITDQDYLIVYGDEGGEEADAWFRQYSEILVERLA HHHCCCCCCCEEEEECCCCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH EIGFKKCTGGIMPCNDNWRGSLSQWQRRLLGIVRYETEDYGKNLMDLIVLSDARFVAGDG HCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCCCCEEECCC ELAGVLVSRIRSLLQDYFMALWGMAKAATEMRLALGFLKRFWTEGSGEHKGCFNLKLLAW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHH APLVMNVRILAINQGIPATSTVRRIELLEREHSFSAESARGLIEAYRILTKHRILLQVKV HHHHHCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEHH IKGIQDDAYYLNPYSLPADERERIRQALLMIEDLQKTIHTNFSIV HHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PHRVYLPEPSDAELLKELLGEVHAYLPLLDRGEMRRFLNGLKLEVEEELGELRNASGEE CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEHHHHHHHHHCCCCCH EQLLERVRRESDYGRLFQIHEELNRIEMERFLSFYSVTALHENCTSYRDALADRALQLVM HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEMGTPPPVPFALISMGSDGREEQTLITDQDYLIVYGDEGGEEADAWFRQYSEILVERLA HHHCCCCCCCEEEEECCCCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH EIGFKKCTGGIMPCNDNWRGSLSQWQRRLLGIVRYETEDYGKNLMDLIVLSDARFVAGDG HCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCCCCEEECCC ELAGVLVSRIRSLLQDYFMALWGMAKAATEMRLALGFLKRFWTEGSGEHKGCFNLKLLAW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHH APLVMNVRILAINQGIPATSTVRRIELLEREHSFSAESARGLIEAYRILTKHRILLQVKV HHHHHCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEHH IKGIQDDAYYLNPYSLPADERERIRQALLMIEDLQKTIHTNFSIV HHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA