| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is folD-2 [H]
Identifier: 197117884
GI number: 197117884
Start: 1731891
End: 1732736
Strand: Direct
Name: folD-2 [H]
Synonym: Gbem_1497
Alternate gene names: 197117884
Gene position: 1731891-1732736 (Clockwise)
Preceding gene: 197117883
Following gene: 197117885
Centisome position: 37.53
GC content: 63.83
Gene sequence:
>846_bases ATGGCTAAAATCATCGACGGCAAGGCCATCGCGGCGAAGATCCGTGCTGAAATCAGCGCGGAAGCGGCTCAACTGAAACA AAAGGGGATCGTTCCGGGTCTCGCCGTGGTGCTGGTCGGAGAGGATCCCGCCAGCAAGGTCTATGTCTCCATGAAAGAAA AGGCATGCGCCGACGTGGGGATTTTTTCCGACGAATACAAGCTTTCCGCCGACACCGGCGAGGCGGAGCTTCTGGCGCTG ATCGACAAGCTGAACCACGACCCGAAGATCCACGGCATCCTGGTGCAGCTCCCGCTTCCCAAGCAGATCAACACCGAGCG CGTGCTGGAGGCGATCTCCCCGGACAAGGACGCCGACGGCTTCCACCCCTATAACGTCGGGCGCCTGGTGATCGGCAAGC CGCTCTTCCAGCCCTGCACCCCCTACGGCGTGATGGTGATGCTGAAGGAGGCGGGGGTCGAGCTTTCAGGGAAGGAAGTG GTCGTGGTCGGCCGCTCCAACATCGTGGGCAAGCCCGTGGCCTTCATGTGCCTGCAGCAAAACGCCACCGTGACCCTGTG CCATTCGAAGACCCGCGACCTGGCCGCGAAGGTGTCCCAGGCCGACGTGGTCATCGCCGCGGTCGGGGTGCCGGAGATGA TCAAGGGGGCCTGGATCAAGGAGGGCGCCGTGGTGATCGACGTCGGCGTGAACCGGGTGGGCGAGAAGAAGCTTGTAGGG GACGTGGAATACGCCGCGGCCAGCGAGCGCGCCTCGGCCATCACGCCGGTCCCCGGCGGCGTCGGCCCCATGACCATCAC CATGCTGCTGCAGAACACGCTTGAGTCCGCCAAGAGGGGTCTCTAG
Upstream 100 bases:
>100_bases TCCCGGTTCCTTATTATCTTGCTTTTAAAAAACTGTCTCAGGCGCCGGTCCCTATTACCTGTGCGCCTTATATTATTAAT GAAACAAAGGGGTGGATGTA
Downstream 100 bases:
>100_bases GGAAGTACTCCGCCCCCTGTCTCCAGACGGGGGGCGGGCCGCTTTGGCGGCAGCGGGGCGCCGTGCAATTCCATGTATTG ACAAAGGAGTATCTCCATGC
Product: bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
Products: NA
Alternate protein names: Methylenetetrahydrofolate dehydrogenase; Methenyltetrahydrofolate cyclohydrolase [H]
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MAKIIDGKAIAAKIRAEISAEAAQLKQKGIVPGLAVVLVGEDPASKVYVSMKEKACADVGIFSDEYKLSADTGEAELLAL IDKLNHDPKIHGILVQLPLPKQINTERVLEAISPDKDADGFHPYNVGRLVIGKPLFQPCTPYGVMVMLKEAGVELSGKEV VVVGRSNIVGKPVAFMCLQQNATVTLCHSKTRDLAAKVSQADVVIAAVGVPEMIKGAWIKEGAVVIDVGVNRVGEKKLVG DVEYAAASERASAITPVPGGVGPMTITMLLQNTLESAKRGL
Sequences:
>Translated_281_residues MAKIIDGKAIAAKIRAEISAEAAQLKQKGIVPGLAVVLVGEDPASKVYVSMKEKACADVGIFSDEYKLSADTGEAELLAL IDKLNHDPKIHGILVQLPLPKQINTERVLEAISPDKDADGFHPYNVGRLVIGKPLFQPCTPYGVMVMLKEAGVELSGKEV VVVGRSNIVGKPVAFMCLQQNATVTLCHSKTRDLAAKVSQADVVIAAVGVPEMIKGAWIKEGAVVIDVGVNRVGEKKLVG DVEYAAASERASAITPVPGGVGPMTITMLLQNTLESAKRGL >Mature_280_residues AKIIDGKAIAAKIRAEISAEAAQLKQKGIVPGLAVVLVGEDPASKVYVSMKEKACADVGIFSDEYKLSADTGEAELLALI DKLNHDPKIHGILVQLPLPKQINTERVLEAISPDKDADGFHPYNVGRLVIGKPLFQPCTPYGVMVMLKEAGVELSGKEVV VVGRSNIVGKPVAFMCLQQNATVTLCHSKTRDLAAKVSQADVVIAAVGVPEMIKGAWIKEGAVVIDVGVNRVGEKKLVGD VEYAAASERASAITPVPGGVGPMTITMLLQNTLESAKRGL
Specific function: Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate [H]
COG id: COG0190
COG function: function code H; 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family [H]
Homologues:
Organism=Homo sapiens, GI222136639, Length=292, Percent_Identity=49.3150684931507, Blast_Score=273, Evalue=1e-73, Organism=Homo sapiens, GI94721354, Length=296, Percent_Identity=45.6081081081081, Blast_Score=221, Evalue=4e-58, Organism=Homo sapiens, GI222418558, Length=294, Percent_Identity=42.8571428571429, Blast_Score=219, Evalue=3e-57, Organism=Homo sapiens, GI36796743, Length=264, Percent_Identity=27.6515151515151, Blast_Score=94, Evalue=9e-20, Organism=Escherichia coli, GI1786741, Length=276, Percent_Identity=53.6231884057971, Blast_Score=293, Evalue=9e-81, Organism=Caenorhabditis elegans, GI17568735, Length=293, Percent_Identity=41.6382252559727, Blast_Score=206, Evalue=1e-53, Organism=Saccharomyces cerevisiae, GI6319558, Length=286, Percent_Identity=50.3496503496504, Blast_Score=275, Evalue=8e-75, Organism=Saccharomyces cerevisiae, GI6321643, Length=297, Percent_Identity=44.7811447811448, Blast_Score=256, Evalue=4e-69, Organism=Saccharomyces cerevisiae, GI6322933, Length=320, Percent_Identity=29.0625, Blast_Score=76, Evalue=6e-15, Organism=Drosophila melanogaster, GI62472483, Length=291, Percent_Identity=48.1099656357388, Blast_Score=265, Evalue=3e-71, Organism=Drosophila melanogaster, GI45551871, Length=291, Percent_Identity=48.1099656357388, Blast_Score=265, Evalue=3e-71, Organism=Drosophila melanogaster, GI24645718, Length=291, Percent_Identity=48.1099656357388, Blast_Score=265, Evalue=3e-71, Organism=Drosophila melanogaster, GI17137370, Length=291, Percent_Identity=48.1099656357388, Blast_Score=265, Evalue=3e-71, Organism=Drosophila melanogaster, GI17136816, Length=295, Percent_Identity=45.4237288135593, Blast_Score=242, Evalue=2e-64, Organism=Drosophila melanogaster, GI17136818, Length=295, Percent_Identity=45.4237288135593, Blast_Score=242, Evalue=2e-64,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR000672 - InterPro: IPR020630 - InterPro: IPR020867 - InterPro: IPR020631 [H]
Pfam domain/function: PF00763 THF_DHG_CYH; PF02882 THF_DHG_CYH_C [H]
EC number: =1.5.1.5; =3.5.4.9 [H]
Molecular weight: Translated: 29653; Mature: 29522
Theoretical pI: Translated: 7.45; Mature: 7.45
Prosite motif: PS00766 THF_DHG_CYH_1 ; PS00767 THF_DHG_CYH_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKIIDGKAIAAKIRAEISAEAAQLKQKGIVPGLAVVLVGEDPASKVYVSMKEKACADVG CCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEHHHHHHHCC IFSDEYKLSADTGEAELLALIDKLNHDPKIHGILVQLPLPKQINTERVLEAISPDKDADG CCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCC FHPYNVGRLVIGKPLFQPCTPYGVMVMLKEAGVELSGKEVVVVGRSNIVGKPVAFMCLQQ CCCCCCCEEEECCCCCCCCCCHHEEEEEECCCCEECCCEEEEECCCCCCCCCCEEEEEEC NATVTLCHSKTRDLAAKVSQADVVIAAVGVPEMIKGAWIKEGAVVIDVGVNRVGEKKLVG CCEEEEECCCHHHHHHHHCCCCEEEEECCCHHHHHCCEEECCCEEEEECCCCCCCHHHCC DVEYAAASERASAITPVPGGVGPMTITMLLQNTLESAKRGL CHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AKIIDGKAIAAKIRAEISAEAAQLKQKGIVPGLAVVLVGEDPASKVYVSMKEKACADVG CEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEHHHHHHHCC IFSDEYKLSADTGEAELLALIDKLNHDPKIHGILVQLPLPKQINTERVLEAISPDKDADG CCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCC FHPYNVGRLVIGKPLFQPCTPYGVMVMLKEAGVELSGKEVVVVGRSNIVGKPVAFMCLQQ CCCCCCCEEEECCCCCCCCCCHHEEEEEECCCCEECCCEEEEECCCCCCCCCCEEEEEEC NATVTLCHSKTRDLAAKVSQADVVIAAVGVPEMIKGAWIKEGAVVIDVGVNRVGEKKLVG CCEEEEECCCHHHHHHHHCCCCEEEEECCCHHHHHCCEEECCCEEEEECCCCCCCHHHCC DVEYAAASERASAITPVPGGVGPMTITMLLQNTLESAKRGL CHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA