Click here to switch to the map view.

The map label for this gene is bamO [H]

Identifier: 197117856

GI number: 197117856

Start: 1701686

End: 1702462

Strand: Direct

Name: bamO [H]

Synonym: Gbem_1469

Alternate gene names: 197117856

Gene position: 1701686-1702462 (Clockwise)

Preceding gene: 197117855

Following gene: 197117857

Centisome position: 36.87

GC content: 62.29

Gene sequence:

>777_bases
ATGAAAGTTCTAGTCTGCATCAAACAGGTACCGGATATGGAATCCCGTTTCAAGGTCAACGGGAGCGGCGATTGGTACGA
CGAAGCCGATCTCGCCTACCGGATGAACGAGTATGACGAGTACGCGGTGGAACAGGCGGTACAGCTGAAGGAACAGCTGG
GCGACGCGCCCGACGTCACCGTCCTCTCCATCGGGCCGGATCGGGTAGGGGATGCGCTCAAAAAGGCGCTGGCCATGGGG
TGCGACCGCGCCGTCCACGTCCAGGACCCGGACAGCTGCCGCAAGGATCCCTGGCAGATCGCCGACATCATCGCCTCCTT
CGCCAAGGGGAAAGACTTCGACGTCATCTTCACCGGCATGCAGTCCCAGGACAGGGGCTCCGCCCAGGTGGGCGTCACCG
TCGCTGAGCGCTTGGGGCACAACTGCACCACCACTCTGGTCGGCTTCGGCTTTGCCGACGGCGTCATCACCGCCAAGAGG
GAGCTCGAAGGCGGGTTGAAGAGCGTCGTCAAGCTTCCGCTTCCGGCCCTGGTCACCTGCCAGCTCGGCCTGAACGTGCC
GCGCTACCCGACCCTTCCCAACATCATGAAGGCGAAGAAGAAGGAGTTTGTGACCGTCCCGGCTGCCGAGCTCCTGAGCG
AAGAGTCGGCGGTCGCCACCGAAAAGCTCTACCCGCCGGTGAAAAGCGGCTCCGCCGTCGTGCTGGAAGGTGATCTGGCG
CAGATCGCCGATCGTCTGCTGGGGATTCTCAAGGAAAAGACTACGGTCGTGAAATAG

Upstream 100 bases:

>100_bases
ATGCTGGAGGACGGACTTAAGGACCAGGGCGCGGAAAAGGTGAGGGTAAAAGACATCGCAGAGGTAATGGCCGAGGCAAT
CAACTAGATAGGAGGCAAAA

Downstream 100 bases:

>100_bases
GAGGTGAGCCATGAAAGCACTGCTTATCTGTGAACAAAGGGAAGGAAAGATCCTCGACACCAGTTATGAGCTGGTGGCGT
TCGCCGATCGCCTGGGCGCC

Product: electron transfer flavoprotein subunit beta

Products: NA

Alternate protein names: Beta-ETF; Electron transfer flavoprotein small subunit; ETFSS [H]

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MKVLVCIKQVPDMESRFKVNGSGDWYDEADLAYRMNEYDEYAVEQAVQLKEQLGDAPDVTVLSIGPDRVGDALKKALAMG
CDRAVHVQDPDSCRKDPWQIADIIASFAKGKDFDVIFTGMQSQDRGSAQVGVTVAERLGHNCTTTLVGFGFADGVITAKR
ELEGGLKSVVKLPLPALVTCQLGLNVPRYPTLPNIMKAKKKEFVTVPAAELLSEESAVATEKLYPPVKSGSAVVLEGDLA
QIADRLLGILKEKTTVVK

Sequences:

>Translated_258_residues
MKVLVCIKQVPDMESRFKVNGSGDWYDEADLAYRMNEYDEYAVEQAVQLKEQLGDAPDVTVLSIGPDRVGDALKKALAMG
CDRAVHVQDPDSCRKDPWQIADIIASFAKGKDFDVIFTGMQSQDRGSAQVGVTVAERLGHNCTTTLVGFGFADGVITAKR
ELEGGLKSVVKLPLPALVTCQLGLNVPRYPTLPNIMKAKKKEFVTVPAAELLSEESAVATEKLYPPVKSGSAVVLEGDLA
QIADRLLGILKEKTTVVK
>Mature_258_residues
MKVLVCIKQVPDMESRFKVNGSGDWYDEADLAYRMNEYDEYAVEQAVQLKEQLGDAPDVTVLSIGPDRVGDALKKALAMG
CDRAVHVQDPDSCRKDPWQIADIIASFAKGKDFDVIFTGMQSQDRGSAQVGVTVAERLGHNCTTTLVGFGFADGVITAKR
ELEGGLKSVVKLPLPALVTCQLGLNVPRYPTLPNIMKAKKKEFVTVPAAELLSEESAVATEKLYPPVKSGSAVVLEGDLA
QIADRLLGILKEKTTVVK

Specific function: The electron transfer flavoprotein of this bacterium serves as an electron acceptor specifically for trimethylamine dehydrogenase. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) [H]

COG id: COG2086

COG function: function code C; Electron transfer flavoprotein, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF beta-subunit/fixA family [H]

Homologues:

Organism=Homo sapiens, GI4503609, Length=213, Percent_Identity=35.6807511737089, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI62420877, Length=181, Percent_Identity=38.121546961326, Blast_Score=111, Evalue=7e-25,
Organism=Escherichia coli, GI87081682, Length=245, Percent_Identity=32.2448979591837, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI2367123, Length=255, Percent_Identity=25.0980392156863, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87082158, Length=209, Percent_Identity=26.7942583732057, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI25141345, Length=242, Percent_Identity=33.8842975206612, Blast_Score=115, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6321646, Length=203, Percent_Identity=30.0492610837438, Blast_Score=93, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24651147, Length=257, Percent_Identity=34.6303501945525, Blast_Score=110, Evalue=8e-25,
Organism=Drosophila melanogaster, GI24651145, Length=257, Percent_Identity=34.6303501945525, Blast_Score=110, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000049
- InterPro:   IPR014730
- InterPro:   IPR012255
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01012 ETF [H]

EC number: NA

Molecular weight: Translated: 27953; Mature: 27953

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLVCIKQVPDMESRFKVNGSGDWYDEADLAYRMNEYDEYAVEQAVQLKEQLGDAPDVT
CEEEEEECCCCCCHHCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
VLSIGPDRVGDALKKALAMGCDRAVHVQDPDSCRKDPWQIADIIASFAKGKDFDVIFTGM
EEEECHHHHHHHHHHHHHHCCCCEEECCCCHHHCCCHHHHHHHHHHHHCCCCCEEEEECC
QSQDRGSAQVGVTVAERLGHNCTTTLVGFGFADGVITAKRELEGGLKSVVKLPLPALVTC
CCCCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
QLGLNVPRYPTLPNIMKAKKKEFVTVPAAELLSEESAVATEKLYPPVKSGSAVVLEGDLA
EECCCCCCCCCCHHHHHHHHHHEEECCHHHHHCCHHHHHHHHCCCCCCCCCEEEEECCHH
QIADRLLGILKEKTTVVK
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKVLVCIKQVPDMESRFKVNGSGDWYDEADLAYRMNEYDEYAVEQAVQLKEQLGDAPDVT
CEEEEEECCCCCCHHCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
VLSIGPDRVGDALKKALAMGCDRAVHVQDPDSCRKDPWQIADIIASFAKGKDFDVIFTGM
EEEECHHHHHHHHHHHHHHCCCCEEECCCCHHHCCCHHHHHHHHHHHHCCCCCEEEEECC
QSQDRGSAQVGVTVAERLGHNCTTTLVGFGFADGVITAKRELEGGLKSVVKLPLPALVTC
CCCCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
QLGLNVPRYPTLPNIMKAKKKEFVTVPAAELLSEESAVATEKLYPPVKSGSAVVLEGDLA
EECCCCCCCCCCHHHHHHHHHHEEECCHHHHHCCHHHHHHHHCCCCCCCCCEEEEECCHH
QIADRLLGILKEKTTVVK
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7798207; 12567183 [H]