Click here to switch to the map view.

The map label for this gene is 197117798

Identifier: 197117798

GI number: 197117798

Start: 1623851

End: 1624984

Strand: Direct

Name: 197117798

Synonym: Gbem_1410

Alternate gene names: NA

Gene position: 1623851-1624984 (Clockwise)

Preceding gene: 197117797

Following gene: 197117799

Centisome position: 35.19

GC content: 62.26

Gene sequence:

>1134_bases
ATGCCGCCATACGCCGGATTTGAACAGGGCCCGATCCGCCCACCCAGCGAAGCAGACAGCCTCCTGATCCGGGTGAACCG
GAACTGCCCCTGGAACCGCTGCACCTTCTGCTCCATCTACAAGAAACAGAAATTCTCCATCCGTCCGGTTGAGGACGTCA
TCCGCGACATCGACACCATTTACCATTTGATCACAAACATTGCTCAAGGCGTGCCGCCGCAGAACCTGCGGGGAGACCAT
CAGGGGGTGCTGGCGGCTTGGAGCTGGTACTGCTCCGGGATGCAATCGGTCTTCCTGCAGGATGCCGACTGCTTCACCTA
CCGTCCCGAAAACCTGGCGCGGATTCTCAACCACCTTAAGGAGAGGTTCCCCGGGGTGAAGAGGATCACCTGCTATGCCC
GCTCCGAGAGCCTCGCCCGTACCCCGGACGCAGCCCTGAGGGAGTTGGCCGCGGCGGGGCTGAACCGGATCCACGTGGGG
ATGGAGACCGGTTCGGAAGCGCTGCTAAGGCTTGTGCGCAAGGGGGTGGACAAGGAGGGGCAGGTTCAAGCCGGGCTCAA
GGTGAAGGGGGCGGGGATCGAGCTCTCCGAATATTTCCTCGCGGGGCTGGGCGGCACTGAGCTTTCCCGGGAGCACGCCG
AGGAGAGCGCAGACGTCATCAACCGGATCAATCCCGACTTCATCCGCTTCAGGAACCTGCACATCCGGGAAGGGATCGAC
CTCTTCCCGGGAAGCCCGGACAAGAGCTTCCGCTTCGCGTCGGACGCGGTTTTGGCCCGGGAGATCGGCACCTTCCTGGA
AAACCTCGACGGTATCGCCAGCGCGGTGAGAAGCGACCATGCCTTCAACCTGTTTCAGGAGATAAACGGCGCTTTGCCCT
CAGGCAAGGAGCGCCTGGTCGCGGTCCCAAGGAGGTTTCTGGAGCTGGAGCCGGAAGAGCGGATGCTGTTCCAGGTGGGG
AAGAGGACGGGGCATCTGCAGCGTCTGGACGATCTGAAGCGCCCGGAGCAGGTCGAGCCGGTGCGTAAGATCTGCAGGCA
ATCGGGAATCACGGCCGCCAACGTCGATGAGCGGATGCACGAGTTGATGCACGAGTTGATGCAGGACAGGCTGCGAAGGG
GCATCTACGGGTAG

Upstream 100 bases:

>100_bases
CGGCAGCTGATGGGAGAGCGCATGTTTCCCCTGACCCTAGACGGGGTAGGGGAGGCGGTCGAGTTGTTGAACAGGTAAAC
GCCACCTTAAGGAGTTTCCC

Downstream 100 bases:

>100_bases
CTTGGGCGAAGTTCGTTGCGATGCGCTTGCCGCTCCGGATTCCCTTAATGTTCCTGTCGTTCGTTGATGCATATTTTAAA
ACGATGTGCTATTATCCTGT

Product: radical SAM protein

Products: NA

Alternate protein names: Radical SAM Domain-Containing Protein; Fe-S Oxidoreductase; Oxygen-Independent Coproporphyrinogen III Oxidase; Radical SAM Family Protein; Radical Sam Domain Protein; Coproporphyrinogen Oxidase; Elongator /MiaB/NifB; Fe-S Oxidoreductase Family Protein; Radical SAM Superfamily Lipoprotein; Oxygen-Independent Coproporphyrinogen III; Radical SAM

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MPPYAGFEQGPIRPPSEADSLLIRVNRNCPWNRCTFCSIYKKQKFSIRPVEDVIRDIDTIYHLITNIAQGVPPQNLRGDH
QGVLAAWSWYCSGMQSVFLQDADCFTYRPENLARILNHLKERFPGVKRITCYARSESLARTPDAALRELAAAGLNRIHVG
METGSEALLRLVRKGVDKEGQVQAGLKVKGAGIELSEYFLAGLGGTELSREHAEESADVINRINPDFIRFRNLHIREGID
LFPGSPDKSFRFASDAVLAREIGTFLENLDGIASAVRSDHAFNLFQEINGALPSGKERLVAVPRRFLELEPEERMLFQVG
KRTGHLQRLDDLKRPEQVEPVRKICRQSGITAANVDERMHELMHELMQDRLRRGIYG

Sequences:

>Translated_377_residues
MPPYAGFEQGPIRPPSEADSLLIRVNRNCPWNRCTFCSIYKKQKFSIRPVEDVIRDIDTIYHLITNIAQGVPPQNLRGDH
QGVLAAWSWYCSGMQSVFLQDADCFTYRPENLARILNHLKERFPGVKRITCYARSESLARTPDAALRELAAAGLNRIHVG
METGSEALLRLVRKGVDKEGQVQAGLKVKGAGIELSEYFLAGLGGTELSREHAEESADVINRINPDFIRFRNLHIREGID
LFPGSPDKSFRFASDAVLAREIGTFLENLDGIASAVRSDHAFNLFQEINGALPSGKERLVAVPRRFLELEPEERMLFQVG
KRTGHLQRLDDLKRPEQVEPVRKICRQSGITAANVDERMHELMHELMQDRLRRGIYG
>Mature_376_residues
PPYAGFEQGPIRPPSEADSLLIRVNRNCPWNRCTFCSIYKKQKFSIRPVEDVIRDIDTIYHLITNIAQGVPPQNLRGDHQ
GVLAAWSWYCSGMQSVFLQDADCFTYRPENLARILNHLKERFPGVKRITCYARSESLARTPDAALRELAAAGLNRIHVGM
ETGSEALLRLVRKGVDKEGQVQAGLKVKGAGIELSEYFLAGLGGTELSREHAEESADVINRINPDFIRFRNLHIREGIDL
FPGSPDKSFRFASDAVLAREIGTFLENLDGIASAVRSDHAFNLFQEINGALPSGKERLVAVPRRFLELEPEERMLFQVGK
RTGHLQRLDDLKRPEQVEPVRKICRQSGITAANVDERMHELMHELMQDRLRRGIYG

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42615; Mature: 42484

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPYAGFEQGPIRPPSEADSLLIRVNRNCPWNRCTFCSIYKKQKFSIRPVEDVIRDIDTI
CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
YHLITNIAQGVPPQNLRGDHQGVLAAWSWYCSGMQSVFLQDADCFTYRPENLARILNHLK
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHH
ERFPGVKRITCYARSESLARTPDAALRELAAAGLNRIHVGMETGSEALLRLVRKGVDKEG
HHCCCCEEEEEEHHCCHHHCCHHHHHHHHHHHCHHHEEECCCCCHHHHHHHHHHCCCCCC
QVQAGLKVKGAGIELSEYFLAGLGGTELSREHAEESADVINRINPDFIRFRNLHIREGID
CEECCCEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHCCCC
LFPGSPDKSFRFASDAVLAREIGTFLENLDGIASAVRSDHAFNLFQEINGALPSGKERLV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
AVPRRFLELEPEERMLFQVGKRTGHLQRLDDLKRPEQVEPVRKICRQSGITAANVDERMH
HHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
ELMHELMQDRLRRGIYG
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PPYAGFEQGPIRPPSEADSLLIRVNRNCPWNRCTFCSIYKKQKFSIRPVEDVIRDIDTI
CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
YHLITNIAQGVPPQNLRGDHQGVLAAWSWYCSGMQSVFLQDADCFTYRPENLARILNHLK
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHH
ERFPGVKRITCYARSESLARTPDAALRELAAAGLNRIHVGMETGSEALLRLVRKGVDKEG
HHCCCCEEEEEEHHCCHHHCCHHHHHHHHHHHCHHHEEECCCCCHHHHHHHHHHCCCCCC
QVQAGLKVKGAGIELSEYFLAGLGGTELSREHAEESADVINRINPDFIRFRNLHIREGID
CEECCCEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHCCCC
LFPGSPDKSFRFASDAVLAREIGTFLENLDGIASAVRSDHAFNLFQEINGALPSGKERLV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
AVPRRFLELEPEERMLFQVGKRTGHLQRLDDLKRPEQVEPVRKICRQSGITAANVDERMH
HHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
ELMHELMQDRLRRGIYG
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA