| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117794
Identifier: 197117794
GI number: 197117794
Start: 1619710
End: 1620579
Strand: Reverse
Name: 197117794
Synonym: Gbem_1406
Alternate gene names: NA
Gene position: 1620579-1619710 (Counterclockwise)
Preceding gene: 197117815
Following gene: 197117793
Centisome position: 35.11
GC content: 48.39
Gene sequence:
>870_bases ATGGCTCGTCCCCTACGCATTGAATTTGACGGAGCACTGTATCACGTAACTTCGCGAGGCAACGAGCGCAAAGACGTATT CCAGGTCGACAAAGACCGCACAGTGTTTCTAGGTATCCTTGCAAAGTGCTGCAACCTGTTCAATTGGGTTTGTCATGCCT ACTGCCTCATGAATAACCATTACCACCTCGTTATTGAGACCCTTGACAGCACGCTTAGCAGAGGAATGCGACAGCTTAAC GGCGCATACACCCAGAAGTTCAACTGGAACCACGACCGCGTTGGGCACCTTTTCCAGGGTCGATACAAGGCGGTGTTGAT CGAGAAGGAAAGTCATCTCCTGGAGGCATGTCGCTATGTCGTGTTAAACCCCATAAGAGCAAAGATGATAACTACTCCAC AGCAATGGCAGTGGAGCAGTTATCGAGGAACATGTGGCTTGGCTACTCCCGCTGCTTGCCTTACTGTAGAATGGGTCCTT CAGCAGTTCGGCGGAACTCGTCAACTCGCGATCAGGGAATATAAAAAGTTTGTGAAAGATGGAATAGAAGCTCCATCTCT ATGGGAGGACCTAAGATGCCAGATCCTGCTTGGAGATGAGGCCTTCATTGATAAATTTAGTGAAGTGGCAAAGGGAGCTG AAGAATTGAGAGAGATCCCTCGCAGTCAACGATTCCTATCTCGTCCATCGCTCCAGGATTTATTCCTCGAATTGAACAAC AAGCAGCACCGGAATGATGTGATCATTGAAGCGGTGCAGGCTCACGGATATGCTCAAAAAGAAGTTGCAGATCATCTCAG ACTGCACTACGCCACAATTAGTCGAATTTTAGCCAAGAACAACGGGGAAACATCAAGAAGCAAGACCTGA
Upstream 100 bases:
>100_bases AGCTTGATCGAGCACAGCCTGGGGGTCAGGTCTTGCTTCTTGATGTTTTGGTGGCTTACTTAGGCGGAAAGAACTATCCC AGTTCTAAGAGGCCCTTGTC
Downstream 100 bases:
>100_bases CCCCAGGCTAGGTGCGAGGTAGCTTAACCATGTCAAACCAGAAATCCAACGCCTTGGCGAAAAGTGTGCATTCCCGCTGG CCTGCACTGTTCGCGTTTCT
Product: transposase of ISGbem_B
Products: NA
Alternate protein names: Transposase And Inactivated Derivatives; Conserved Domain Protein; Transposase Of ISGbem_B; Transposase Family Protein; Transposase And Inactivated Derivatives Protein; Transposase-Like Protein; Transposase Or Inactivated Derivative; Methionine-R-Sulfoxide Reductase; Transposase Domain-Containing Protein
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MARPLRIEFDGALYHVTSRGNERKDVFQVDKDRTVFLGILAKCCNLFNWVCHAYCLMNNHYHLVIETLDSTLSRGMRQLN GAYTQKFNWNHDRVGHLFQGRYKAVLIEKESHLLEACRYVVLNPIRAKMITTPQQWQWSSYRGTCGLATPAACLTVEWVL QQFGGTRQLAIREYKKFVKDGIEAPSLWEDLRCQILLGDEAFIDKFSEVAKGAEELREIPRSQRFLSRPSLQDLFLELNN KQHRNDVIIEAVQAHGYAQKEVADHLRLHYATISRILAKNNGETSRSKT
Sequences:
>Translated_289_residues MARPLRIEFDGALYHVTSRGNERKDVFQVDKDRTVFLGILAKCCNLFNWVCHAYCLMNNHYHLVIETLDSTLSRGMRQLN GAYTQKFNWNHDRVGHLFQGRYKAVLIEKESHLLEACRYVVLNPIRAKMITTPQQWQWSSYRGTCGLATPAACLTVEWVL QQFGGTRQLAIREYKKFVKDGIEAPSLWEDLRCQILLGDEAFIDKFSEVAKGAEELREIPRSQRFLSRPSLQDLFLELNN KQHRNDVIIEAVQAHGYAQKEVADHLRLHYATISRILAKNNGETSRSKT >Mature_288_residues ARPLRIEFDGALYHVTSRGNERKDVFQVDKDRTVFLGILAKCCNLFNWVCHAYCLMNNHYHLVIETLDSTLSRGMRQLNG AYTQKFNWNHDRVGHLFQGRYKAVLIEKESHLLEACRYVVLNPIRAKMITTPQQWQWSSYRGTCGLATPAACLTVEWVLQ QFGGTRQLAIREYKKFVKDGIEAPSLWEDLRCQILLGDEAFIDKFSEVAKGAEELREIPRSQRFLSRPSLQDLFLELNNK QHRNDVIIEAVQAHGYAQKEVADHLRLHYATISRILAKNNGETSRSKT
Specific function: Unknown
COG id: COG1943
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33427; Mature: 33295
Theoretical pI: Translated: 8.88; Mature: 8.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARPLRIEFDGALYHVTSRGNERKDVFQVDKDRTVFLGILAKCCNLFNWVCHAYCLMNNH CCCCEEEEECCEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC YHLVIETLDSTLSRGMRQLNGAYTQKFNWNHDRVGHLFQGRYKAVLIEKESHLLEACRYV EEEEHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHCCCEEEEEEECHHHHHHHHHHH VLNPIRAKMITTPQQWQWSSYRGTCGLATPAACLTVEWVLQQFGGTRQLAIREYKKFVKD HHCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC GIEAPSLWEDLRCQILLGDEAFIDKFSEVAKGAEELREIPRSQRFLSRPSLQDLFLELNN CCCCCCHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHCC KQHRNDVIIEAVQAHGYAQKEVADHLRLHYATISRILAKNNGETSRSKT CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure ARPLRIEFDGALYHVTSRGNERKDVFQVDKDRTVFLGILAKCCNLFNWVCHAYCLMNNH CCCEEEEECCEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC YHLVIETLDSTLSRGMRQLNGAYTQKFNWNHDRVGHLFQGRYKAVLIEKESHLLEACRYV EEEEHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHCCCEEEEEEECHHHHHHHHHHH VLNPIRAKMITTPQQWQWSSYRGTCGLATPAACLTVEWVLQQFGGTRQLAIREYKKFVKD HHCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC GIEAPSLWEDLRCQILLGDEAFIDKFSEVAKGAEELREIPRSQRFLSRPSLQDLFLELNN CCCCCCHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHCC KQHRNDVIIEAVQAHGYAQKEVADHLRLHYATISRILAKNNGETSRSKT CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA