| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117732
Identifier: 197117732
GI number: 197117732
Start: 1549208
End: 1550299
Strand: Direct
Name: 197117732
Synonym: Gbem_1344
Alternate gene names: NA
Gene position: 1549208-1550299 (Clockwise)
Preceding gene: 197117729
Following gene: 197117733
Centisome position: 33.57
GC content: 62.0
Gene sequence:
>1092_bases ATGTTTAAACCGTTACGCATAGGAAAACACGAGGCACGCTACCCGCTCATTCAGGGCGGCATGGGAGTGCGCATTTCGGC AGGATCTCTCGCAGGGCACGTAGCCAAGTGCGGAGGGGTCGGCCTTGTCGCTTCACCCGGCATCGTCTTGAACAGCGAGT TTTTCAACGGTTCTAACTATCTCAAGAACAGCTCCCTCGCTCTCAAAGAGGAACTGCGCAAGGCCTATGAGATTGCGCCC GACGGCATCGTCGGCGTGAACGTCATGGTCGCCCTCACCGACTTCGAGGAACTGGTCGTTGCCGCCGTCGAAGGTGGCGC CAAGGTGCTCGTCTGCGGGGCGGGACTCCCCTTGACCTTGCCGGGACTGACCGCGCACGCTCCCGACGTGGCGCTGGTGC CTATCGTATCCTCCGTGCGCGCCGCGCAGTTGATCGCCAAAAAATGGGACAAGGCCTACAACCGACTCCCGGATGCCGTG GTAGTAGAGGATCCCGACACCGCCGGCGGCCACCTGGGTGAAAAGATAGAGAACATCGGCAACGGCGATTACGACCAGTA CGAGACCGTGCGCGGCGTAAAGGAGTTCTTCCGTACCGAGTACAACCTCGACATCCCCATCATCGCCGCCGGCGGGATCT GGGACCGCGCCGATGTGCTGCACGCCCTTGCCGAAGGGGCGGACGGGGTGCAGATGGCGAGCCGCTTCGTGACCACCGTG GAGTGCGACGCTGAGGACGCCTTCAAGCAGGCCTATCTGGATTGCAAGAAGGAGGACATCGGTCTCATCATGAGTCCGGC AGGTCTTCCGGGGCGCGCCATTCTCACCAACCAGCAGGGGATCATCGACTATGACCGGGACCGGGGTTCCTCCTGCAGCC ACGGCTGTCTCAAGAAGTGCTCCTACAAGGAAAGCGGCGAGCGGTTCTGCATCGTCAGGTCCCTGGACCGTGCGCAGCGC GGCGAGGTCGACAGCGGCCTGATCTTCTGCGGCACCAACGCCTACAAGGCGAACCGCATCGAGACCGTGCAGGAGATTTT CGACGAACTGTTCGCCGAAACCGGCGCCGTCTCTCACGAGGAAGCCGCGTAA
Upstream 100 bases:
>100_bases CATTGGAGGGGAGGGGCTTCGTTTTACATTACTATTACAAAGGCAAACACCGTTCTCTGTTAATGTGTAAACGTGACAGT TCCAGATCAGGAGGGAAGAC
Downstream 100 bases:
>100_bases CACGGCCAAGTAGCAGCGGCAGTCCTGCCGCGATAACCGACTGATAATCAAGATCCCCCTGTCGCCATTGAGCCGCAGGG GGATCTTTTTTGGGGTGAAG
Product: 2-nitropropane dioxygenase family oxidoreductase
Products: NA
Alternate protein names: 2-Nitropropane Dioxygenase; Oxidoreductase 2-Nitropropane Dioxygenase Family; Enoyl-(Acyl-Carrier-Protein) Reductase II; 2-Nitropropane Dioxygenase Family Oxidoreductase; 2-Nitropropane Dioxygenase-Like Protein; Dioxygenase Related 2-Nitropropane Dioxygenase; 2-Nitropropane Dioxygenase Npd; Oxidoreductase; Oxidoreductase 2-Nitropropane Dioxygenase Family Protein; Dioxygenase; Dioxygenases Related 2-Nitropropane Dioxygenase; Enoyl-(Acyl-Carrier-Protein) Reductase; Enoyl-[Acyl-Carrier-Protein] Reductase; Enoyl-[Acyl-Carrier Protein] Reductase; 2-Nitropropane Dioxygenase Family; Flavin-Containing Oxidoreductase; 2-Nitropropane Dioxygenase-Releated Protein; Enoyl-(Acyl-Carrier-Protein) Reductase FabK; Dioxygenase/Reductase; 2-Nitropropane Dioxygenase-Like Dioxygenase
Number of amino acids: Translated: 363; Mature: 363
Protein sequence:
>363_residues MFKPLRIGKHEARYPLIQGGMGVRISAGSLAGHVAKCGGVGLVASPGIVLNSEFFNGSNYLKNSSLALKEELRKAYEIAP DGIVGVNVMVALTDFEELVVAAVEGGAKVLVCGAGLPLTLPGLTAHAPDVALVPIVSSVRAAQLIAKKWDKAYNRLPDAV VVEDPDTAGGHLGEKIENIGNGDYDQYETVRGVKEFFRTEYNLDIPIIAAGGIWDRADVLHALAEGADGVQMASRFVTTV ECDAEDAFKQAYLDCKKEDIGLIMSPAGLPGRAILTNQQGIIDYDRDRGSSCSHGCLKKCSYKESGERFCIVRSLDRAQR GEVDSGLIFCGTNAYKANRIETVQEIFDELFAETGAVSHEEAA
Sequences:
>Translated_363_residues MFKPLRIGKHEARYPLIQGGMGVRISAGSLAGHVAKCGGVGLVASPGIVLNSEFFNGSNYLKNSSLALKEELRKAYEIAP DGIVGVNVMVALTDFEELVVAAVEGGAKVLVCGAGLPLTLPGLTAHAPDVALVPIVSSVRAAQLIAKKWDKAYNRLPDAV VVEDPDTAGGHLGEKIENIGNGDYDQYETVRGVKEFFRTEYNLDIPIIAAGGIWDRADVLHALAEGADGVQMASRFVTTV ECDAEDAFKQAYLDCKKEDIGLIMSPAGLPGRAILTNQQGIIDYDRDRGSSCSHGCLKKCSYKESGERFCIVRSLDRAQR GEVDSGLIFCGTNAYKANRIETVQEIFDELFAETGAVSHEEAA >Mature_363_residues MFKPLRIGKHEARYPLIQGGMGVRISAGSLAGHVAKCGGVGLVASPGIVLNSEFFNGSNYLKNSSLALKEELRKAYEIAP DGIVGVNVMVALTDFEELVVAAVEGGAKVLVCGAGLPLTLPGLTAHAPDVALVPIVSSVRAAQLIAKKWDKAYNRLPDAV VVEDPDTAGGHLGEKIENIGNGDYDQYETVRGVKEFFRTEYNLDIPIIAAGGIWDRADVLHALAEGADGVQMASRFVTTV ECDAEDAFKQAYLDCKKEDIGLIMSPAGLPGRAILTNQQGIIDYDRDRGSSCSHGCLKKCSYKESGERFCIVRSLDRAQR GEVDSGLIFCGTNAYKANRIETVQEIFDELFAETGAVSHEEAA
Specific function: Unknown
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38852; Mature: 38852
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKPLRIGKHEARYPLIQGGMGVRISAGSLAGHVAKCGGVGLVASPGIVLNSEFFNGSNY CCCCCCCCCCCCCCCEEECCCEEEEECCCHHHHHHHHCCCCEEECCCEEEECCEECCCCC LKNSSLALKEELRKAYEIAPDGIVGVNVMVALTDFEELVVAAVEGGAKVLVCGAGLPLTL CCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEHHHHHHHHHHCCCCCEEEEECCCCCEEC PGLTAHAPDVALVPIVSSVRAAQLIAKKWDKAYNRLPDAVVVEDPDTAGGHLGEKIENIG CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCC NGDYDQYETVRGVKEFFRTEYNLDIPIIAAGGIWDRADVLHALAEGADGVQMASRFVTTV CCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHEEE ECDAEDAFKQAYLDCKKEDIGLIMSPAGLPGRAILTNQQGIIDYDRDRGSSCSHGCLKKC ECCHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEEECCCCCEEECCCCCCCCCHHHHHHC SYKESGERFCIVRSLDRAQRGEVDSGLIFCGTNAYKANRIETVQEIFDELFAETGAVSHE CCCCCCCEEEEEECHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC EAA CCC >Mature Secondary Structure MFKPLRIGKHEARYPLIQGGMGVRISAGSLAGHVAKCGGVGLVASPGIVLNSEFFNGSNY CCCCCCCCCCCCCCCEEECCCEEEEECCCHHHHHHHHCCCCEEECCCEEEECCEECCCCC LKNSSLALKEELRKAYEIAPDGIVGVNVMVALTDFEELVVAAVEGGAKVLVCGAGLPLTL CCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEHHHHHHHHHHCCCCCEEEEECCCCCEEC PGLTAHAPDVALVPIVSSVRAAQLIAKKWDKAYNRLPDAVVVEDPDTAGGHLGEKIENIG CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCC NGDYDQYETVRGVKEFFRTEYNLDIPIIAAGGIWDRADVLHALAEGADGVQMASRFVTTV CCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHEEE ECDAEDAFKQAYLDCKKEDIGLIMSPAGLPGRAILTNQQGIIDYDRDRGSSCSHGCLKKC ECCHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEEECCCCCEEECCCCCCCCCHHHHHHC SYKESGERFCIVRSLDRAQRGEVDSGLIFCGTNAYKANRIETVQEIFDELFAETGAVSHE CCCCCCCEEEEEECHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC EAA CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA