| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is pulM
Identifier: 197117668
GI number: 197117668
Start: 1478616
End: 1479533
Strand: Direct
Name: pulM
Synonym: Gbem_1280
Alternate gene names: NA
Gene position: 1478616-1479533 (Clockwise)
Preceding gene: 197117667
Following gene: 197117669
Centisome position: 32.04
GC content: 65.14
Gene sequence:
>918_bases ATGCTAACGAACAGGAAGGGCCTGGGACTCGAGATCTCCGCCGGCGGGCTCAGCTTCGCCATGGTGAGCGGCGGCAAAAC ACCCAAGGTGGAGACGGGGCTTTCCCTCCCCTTTGCGCCCGGTATGCTGACCCTGTCGCGCCGGGAACCGAACGTGAACG ACCCCAAGGGGTTCGTCACCGCGCTCAGGGAAGCGCATCTCCGTCTACTGACTCGAGAGCGCTCGGTCAGCGTCTCGCTT CCGGACGCGGTGGGGCGCGTGGTGCTGCTCGACCTGGAGGCACGCTTCAGAAGCCGGGAGGAGGGGCTGGACGTAATCCG CTGGAAGCTCAAAAAGAGCCTCCCCTTCGACATCGGCACGGTGCACCTGGACTACCAGACCCTCGAGGAGAAAGAGAGCG GCGCTGTTTCCCTGCTGGTATCGCTGGTGTCGCGGGCGGTGGTGACCCAGTACGAGGAACTCCTGATCCAGGCGGGGCTG GAGCCCAAACAGATCGACTTCACCTCCTTCAACTTTTATCGCCTCTTCGCGCCGCGGCTGGACATCTCCGACGACGGCGC GTTCGTCACCTTCTACCAGGGGGCGATGACGGTGCTGATCTTCCACGCCGGCGTGCTGAGCTTCTACCGCACCAAGGAAG GGGTCGGCGACGTGCAGAACCTCTACCGCGAGGTGAACAGTTCCTTCCTGGTCTACGGCGATCGTTTCCCGGGTCAGACG GTGGAAGAAGTCTTTTGCATGGCCCCCCCCGCCGACGCCGAGTCGTTCCGCGCCCTGGTGGCGGAGGCCTCTGGGCTTGA GCCGGTGCTGCTCGACCTGGAGCGCATGGTGCAGCAGGCGCCGGCGCTGGGGCTGGACCGGCCGGCACTGCACGCCTTGG CTGGATCGATAGGCGCTGCCTTGAGGAGCCTGCCATGA
Upstream 100 bases:
>100_bases AACCATGTTCCTCCGGGAGAGCGCGGTAGCCAAGGTGCTGGCGGGCGAGACCACGATAAAGGAGATCAACCGTGTCACTT TCGTGGAGTAGGTGCCAGCC
Downstream 100 bases:
>100_bases AACTGACCATAAACCTGGCTACCCGGCGCTATCTCAATATGCGCCGGCTGAACGCGGCGCTTTTCGGCGCCGGGCTCGTG CTGGCGGCGCTTCTCGTTTA
Product: type II secretion system ATPase PulM
Products: NA
Alternate protein names: Type IV Pilus Assembly Protein PilM; Type II Secretion System ATPase PulM
Number of amino acids: Translated: 305; Mature: 305
Protein sequence:
>305_residues MLTNRKGLGLEISAGGLSFAMVSGGKTPKVETGLSLPFAPGMLTLSRREPNVNDPKGFVTALREAHLRLLTRERSVSVSL PDAVGRVVLLDLEARFRSREEGLDVIRWKLKKSLPFDIGTVHLDYQTLEEKESGAVSLLVSLVSRAVVTQYEELLIQAGL EPKQIDFTSFNFYRLFAPRLDISDDGAFVTFYQGAMTVLIFHAGVLSFYRTKEGVGDVQNLYREVNSSFLVYGDRFPGQT VEEVFCMAPPADAESFRALVAEASGLEPVLLDLERMVQQAPALGLDRPALHALAGSIGAALRSLP
Sequences:
>Translated_305_residues MLTNRKGLGLEISAGGLSFAMVSGGKTPKVETGLSLPFAPGMLTLSRREPNVNDPKGFVTALREAHLRLLTRERSVSVSL PDAVGRVVLLDLEARFRSREEGLDVIRWKLKKSLPFDIGTVHLDYQTLEEKESGAVSLLVSLVSRAVVTQYEELLIQAGL EPKQIDFTSFNFYRLFAPRLDISDDGAFVTFYQGAMTVLIFHAGVLSFYRTKEGVGDVQNLYREVNSSFLVYGDRFPGQT VEEVFCMAPPADAESFRALVAEASGLEPVLLDLERMVQQAPALGLDRPALHALAGSIGAALRSLP >Mature_305_residues MLTNRKGLGLEISAGGLSFAMVSGGKTPKVETGLSLPFAPGMLTLSRREPNVNDPKGFVTALREAHLRLLTRERSVSVSL PDAVGRVVLLDLEARFRSREEGLDVIRWKLKKSLPFDIGTVHLDYQTLEEKESGAVSLLVSLVSRAVVTQYEELLIQAGL EPKQIDFTSFNFYRLFAPRLDISDDGAFVTFYQGAMTVLIFHAGVLSFYRTKEGVGDVQNLYREVNSSFLVYGDRFPGQT VEEVFCMAPPADAESFRALVAEASGLEPVLLDLERMVQQAPALGLDRPALHALAGSIGAALRSLP
Specific function: Unknown
COG id: COG4972
COG function: function code NU; Tfp pilus assembly protein, ATPase PilM
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33388; Mature: 33388
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTNRKGLGLEISAGGLSFAMVSGGKTPKVETGLSLPFAPGMLTLSRREPNVNDPKGFVT CCCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH ALREAHLRLLTRERSVSVSLPDAVGRVVLLDLEARFRSREEGLDVIRWKLKKSLPFDIGT HHHHHHHHHHHHHCCCEEECCHHHCEEEEEECHHHHCCHHHHHHHHHHHHHHCCCCCEEE VHLDYQTLEEKESGAVSLLVSLVSRAVVTQYEELLIQAGLEPKQIDFTSFNFYRLFAPRL EEECHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEECCC DISDDGAFVTFYQGAMTVLIFHAGVLSFYRTKEGVGDVQNLYREVNSSFLVYGDRFPGQT CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCH VEEVFCMAPPADAESFRALVAEASGLEPVLLDLERMVQQAPALGLDRPALHALAGSIGAA HHHHEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH LRSLP HHCCC >Mature Secondary Structure MLTNRKGLGLEISAGGLSFAMVSGGKTPKVETGLSLPFAPGMLTLSRREPNVNDPKGFVT CCCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH ALREAHLRLLTRERSVSVSLPDAVGRVVLLDLEARFRSREEGLDVIRWKLKKSLPFDIGT HHHHHHHHHHHHHCCCEEECCHHHCEEEEEECHHHHCCHHHHHHHHHHHHHHCCCCCEEE VHLDYQTLEEKESGAVSLLVSLVSRAVVTQYEELLIQAGLEPKQIDFTSFNFYRLFAPRL EEECHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEECCC DISDDGAFVTFYQGAMTVLIFHAGVLSFYRTKEGVGDVQNLYREVNSSFLVYGDRFPGQT CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCH VEEVFCMAPPADAESFRALVAEASGLEPVLLDLERMVQQAPALGLDRPALHALAGSIGAA HHHHEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH LRSLP HHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA