Click here to switch to the map view.

The map label for this gene is ybfF [C]

Identifier: 197117664

GI number: 197117664

Start: 1474674

End: 1475414

Strand: Direct

Name: ybfF [C]

Synonym: Gbem_1276

Alternate gene names: 197117664

Gene position: 1474674-1475414 (Clockwise)

Preceding gene: 197117663

Following gene: 197117665

Centisome position: 31.95

GC content: 59.65

Gene sequence:

>741_bases
TTGAAACCCATCAAACCGATCGTGGTGATACCCACCTACAACGAAAGGGACAATCTGGAGATGTTGGCCAGGCAGATACT
TTCCCTCGACCCCGCCCTTGAACTGCTGGTCGTGGACGATAATTCCCCGGACGGCACCGGGGACGTGGCCGAGGCGCTGG
CGGCGGAGACCGGCCGGGTGATGGTGCTGCACCGGAAAGGAAAAATGGGGCTTGGATCCGCCTACCGTGAAGGGTTCGCC
CGTGCGCTGGCGCTCGGGGCGGATGTGGTGGTACAGATGGATGCCGATTTCTCCCATGATCCCGCGGTGATACCCTATTT
CTTCGCTGAGATGAAGCAGTCCGACCTGGTCATCGGCTCCAGGTACCTGAACGGGGTAAGCGTGGTGAACTGGCCGCTGC
GCCGCCTCATGCTGAGCTACTTCGCCAGCGTCTACACGCGCGTCATCACCGGCCTTACTATTTCAGACTGCACCAGCGGC
TTCAAATGCTTCCGTGCCGAGACGCTTAAGGCCGTCGATCTCACCAAGATCCGCTCGGACGGCTATTCCTTCCAGATCGA
GATGAACTACCGCTGCAAGGAAAAGGGGCTGCGTATCAGCGAGGTCCCCATCATCTTCATTGACCGGCACGCCGGCACCT
CGAAGATGTCCAAGAGGATCGTGCGCGAGGCGGTGGTGATGGTATGGAAGCTGAAGTTCGGCTCGCTGTTACGGGGCCTT
TTGCCCAAGGAGAGGGTGTGA

Upstream 100 bases:

>100_bases
ATCGTTTATCCTCTGCGAGGTCCTTTCCAGGCGCAGCGCGCGGTGGCGGGATCTTTCCAGTCTTTTTTCGTCTACTTTAG
GAATAGAAAGCGAGTCCCTC

Downstream 100 bases:

>100_bases
TGTCCGATACGCTTTGGTCCATAATCTGCCTCGCCGGGCTCTGGGGCTTCGTCGCCTGCACTATTTTGCTGATCCTCAAG
GCCTTTCCGGCCCGGGACAG

Product: group glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MKPIKPIVVIPTYNERDNLEMLARQILSLDPALELLVVDDNSPDGTGDVAEALAAETGRVMVLHRKGKMGLGSAYREGFA
RALALGADVVVQMDADFSHDPAVIPYFFAEMKQSDLVIGSRYLNGVSVVNWPLRRLMLSYFASVYTRVITGLTISDCTSG
FKCFRAETLKAVDLTKIRSDGYSFQIEMNYRCKEKGLRISEVPIIFIDRHAGTSKMSKRIVREAVVMVWKLKFGSLLRGL
LPKERV

Sequences:

>Translated_246_residues
MKPIKPIVVIPTYNERDNLEMLARQILSLDPALELLVVDDNSPDGTGDVAEALAAETGRVMVLHRKGKMGLGSAYREGFA
RALALGADVVVQMDADFSHDPAVIPYFFAEMKQSDLVIGSRYLNGVSVVNWPLRRLMLSYFASVYTRVITGLTISDCTSG
FKCFRAETLKAVDLTKIRSDGYSFQIEMNYRCKEKGLRISEVPIIFIDRHAGTSKMSKRIVREAVVMVWKLKFGSLLRGL
LPKERV
>Mature_246_residues
MKPIKPIVVIPTYNERDNLEMLARQILSLDPALELLVVDDNSPDGTGDVAEALAAETGRVMVLHRKGKMGLGSAYREGFA
RALALGADVVVQMDADFSHDPAVIPYFFAEMKQSDLVIGSRYLNGVSVVNWPLRRLMLSYFASVYTRVITGLTISDCTSG
FKCFRAETLKAVDLTKIRSDGYSFQIEMNYRCKEKGLRISEVPIIFIDRHAGTSKMSKRIVREAVVMVWKLKFGSLLRGL
LPKERV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4503363, Length=217, Percent_Identity=38.7096774193548, Blast_Score=144, Evalue=9e-35,
Organism=Caenorhabditis elegans, GI71999402, Length=235, Percent_Identity=37.0212765957447, Blast_Score=145, Evalue=1e-35,
Organism=Saccharomyces cerevisiae, GI6325441, Length=240, Percent_Identity=30.4166666666667, Blast_Score=107, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24585265, Length=218, Percent_Identity=37.1559633027523, Blast_Score=138, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 27495; Mature: 27495

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPIKPIVVIPTYNERDNLEMLARQILSLDPALELLVVDDNSPDGTGDVAEALAAETGRV
CCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCE
MVLHRKGKMGLGSAYREGFARALALGADVVVQMDADFSHDPAVIPYFFAEMKQSDLVIGS
EEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEH
RYLNGVSVVNWPLRRLMLSYFASVYTRVITGLTISDCTSGFKCFRAETLKAVDLTKIRSD
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHHHCC
GYSFQIEMNYRCKEKGLRISEVPIIFIDRHAGTSKMSKRIVREAVVMVWKLKFGSLLRGL
CEEEEEEECCCHHHCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPKERV
CCCCCC
>Mature Secondary Structure
MKPIKPIVVIPTYNERDNLEMLARQILSLDPALELLVVDDNSPDGTGDVAEALAAETGRV
CCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCE
MVLHRKGKMGLGSAYREGFARALALGADVVVQMDADFSHDPAVIPYFFAEMKQSDLVIGS
EEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEH
RYLNGVSVVNWPLRRLMLSYFASVYTRVITGLTISDCTSGFKCFRAETLKAVDLTKIRSD
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHHHCC
GYSFQIEMNYRCKEKGLRISEVPIIFIDRHAGTSKMSKRIVREAVVMVWKLKFGSLLRGL
CEEEEEEECCCHHHCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPKERV
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]