| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is nrdJ [H]
Identifier: 197117589
GI number: 197117589
Start: 1393765
End: 1395999
Strand: Reverse
Name: nrdJ [H]
Synonym: Gbem_1201
Alternate gene names: 197117589
Gene position: 1395999-1393765 (Counterclockwise)
Preceding gene: 197117595
Following gene: 197117588
Centisome position: 30.25
GC content: 62.06
Gene sequence:
>2235_bases ATGAAGAAAACAGTCGAGAAGGGAGTAATACCGGGCCTGACCAAGAATGCATTGACCGTACTAGAGAAGCGCTACCTGAA GAGAGACCAGACCGGCAAGACCCTTGAGACTGCCTCAGACATGTTCCGCCGCGTGGCGACCGCCATCGCGCAGGCCGACG CCGTTTTCGACAAGAAAGCGGACATCGGCGCACTCTCCGACAAGTTCTACAACATGATGACCAACTTCGAGTTCCTCCCC AACTCCCCGACCCTGATGAACGCCGGACGCGAGCTGGGTCAGCTCTCCGCCTGCTTCGTGCTTCCGGTGGGCGACAGCAT GGAGGAAATCTTCGAATCGGTCAAGTACACCGCCCTCATCCACAAATCCGGCGGCGGCACCGGCTTCTCCTTTTCCCGCC TGCGCCCGGCCAACGACGTGGTCATGTCCACCACCGGCATCTCCAGCGGCCCCCTCTCCTTCATGAGGGTTTTCGACGTC GCCACCGAGACCATCAAGCAGGGGGGCACCCGTCGCGGCGCGAACATGGCGATACTGCGCGTCGACCATCCGGACATCAT GGACTTCATCATGTGCAAGGCGGATCAGCGCCAGCTGAACAACTTCAACATCTCCGTCGGCATCACCGAGGCGTTCATGA AGGCCGTCGACGCGGACGAGGAGTACACCCTTTACAACCCGCGCGACAAACAGCCGGCCGGGAAGCAGAACGCCCGCAAG GTATTCAACCGCATCGTCAAGCAGGCCTGGGAAAACGGCGAGCCTGGGATCATCTTCCTGGACCGCCTGAACAAGGACAA CCCGACCCCGCACATAGGCGAGATCGAATCCACCAACCCCTGCGGCGAGCAGCCGCTGCTCCCCTACGAGTCCTGCAACC TGGGCTCCATCAACCTGGGCAAGATGGTCATCCACGGCAAGGTCGACTGGGACAAGCTGAAAGAGGTAGTGCGCACCTCC GTCCACTTCCTTGACAACGTCATCGAGGTGAACAACTACCCGCTGCAGCAGATCGACGAGATGACCCGCTCCAACCGTAA GATCGGCCTGGGGGTCATGGGATGGGCGGACATGCTGATCATGCTCGGCATCCCCTACGGCTCCGAGGAGTCGGTGGAAC TGGGCGAGAAGGTGATGCAGTTCATCAACGACGAAGGGCACGCGGCGTCCCGCCAGCTTGCCAAGACCCGCGGCGCCTTC CCCAACTTCAAGGGCTCCGTCTACGACAAGCTCGGCGCAGAGCCGATCCGGAACGCGACCGTCACCACCATCGCTCCGAC CGGCACCATTTCCATCATCGCCAACGCCTCCTCCGGCGTCGAGCCGCTCTTCGCGGTCTCTTACGTGCGCCAGGTCATGG ACAAGAACATCCTGGTCGAAGTGAACCCGCTTTTCGAGAAGATCGCCAAGACCGACGGTTTCTATACCGACGAACTGATG CAGCGGATCGCCGAGCACGGCACCGTTCAGGACATAAGCGCCATCCCCGAGGCCGTCCGCGAGGTATTCGTCACCGCGCA CGACATCACCCCGGAAGAGCACATCACCATGCAGGCTGCCTTCCAGCGCCACACCGACAACGCCGTCTCCAAGACCGTGA ACTTCCCGTGCGAAGCCACCATCGAGGACGTCGAGAAGGTCTACCGCCTGGCCTACGAGAGCAACTGCAAGGGGGTCACC ATCTACCGTGACGGTTCCCGCGACGAGCAGGTTCTCTCCGTCGGCAAGAAAGAAGAAGTAAAGGCCGCAGCACCGGTGCA TGTCGAAGACAAGCGCACCGGCAAACGCGAGCGTCCCAAGGCGCTGAAGGGTTGGACCTACCAGATGCAGACCGGCTGCG GCCCGCTCTACATCACCATCAACGAAGACAACACCGGCCTCTTCGAAGTCTTCACCACCATGGGCAAAGCCGGCGGTTGC GCCGCCTCCCAGTGCGAGGCCATCGGCCGCATGGTGTCTCTTGCCTGGAGAAGCGGCATTCAGGGGCGTCAGGTAGTGAA GCAGCTTCTCGGCATCTCCTGCCACGCGCCGAGCGGATTCGGCGACAACAAAGTACTGTCCTGCGCCGATGCGGTCGCCA AGGCGATCCAGTCGCACCTCTCCCTGACCGGTGCAGCCGACGTCATCGAAGCCCCCGCCTTCGACAGAGGCGCCTGCCCC GAGTGCGGCGGCGTAGTAGAGCACGAAGGCGGCTGCGCCGTCTGCCGCGTCTGCGGCTACTCCGAGTGCGCGTAA
Upstream 100 bases:
>100_bases TCGTCATACATCTTGTGGTTTATTCCTGGCCGGCCACTAAATGTGGTGTCGGCGCAACCAGCATGGTGACATGATATTTA TCCAAGGAGAACGAAACGTT
Downstream 100 bases:
>100_bases AGACGAAGTAGTACAACTACAAGGGGATCCCGCAGATAGCGGGATCCCCTTTTTTGTTACTGACTGCTAAAGCTATCTCT TCGATGCTGCGGGAACGGTA
Product: ribonucleotide-diphosphate reductase subunit alpha
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 744; Mature: 744
Protein sequence:
>744_residues MKKTVEKGVIPGLTKNALTVLEKRYLKRDQTGKTLETASDMFRRVATAIAQADAVFDKKADIGALSDKFYNMMTNFEFLP NSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFSRLRPANDVVMSTTGISSGPLSFMRVFDV ATETIKQGGTRRGANMAILRVDHPDIMDFIMCKADQRQLNNFNISVGITEAFMKAVDADEEYTLYNPRDKQPAGKQNARK VFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQPLLPYESCNLGSINLGKMVIHGKVDWDKLKEVVRTS VHFLDNVIEVNNYPLQQIDEMTRSNRKIGLGVMGWADMLIMLGIPYGSEESVELGEKVMQFINDEGHAASRQLAKTRGAF PNFKGSVYDKLGAEPIRNATVTTIAPTGTISIIANASSGVEPLFAVSYVRQVMDKNILVEVNPLFEKIAKTDGFYTDELM QRIAEHGTVQDISAIPEAVREVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPCEATIEDVEKVYRLAYESNCKGVT IYRDGSRDEQVLSVGKKEEVKAAAPVHVEDKRTGKRERPKALKGWTYQMQTGCGPLYITINEDNTGLFEVFTTMGKAGGC AASQCEAIGRMVSLAWRSGIQGRQVVKQLLGISCHAPSGFGDNKVLSCADAVAKAIQSHLSLTGAADVIEAPAFDRGACP ECGGVVEHEGGCAVCRVCGYSECA
Sequences:
>Translated_744_residues MKKTVEKGVIPGLTKNALTVLEKRYLKRDQTGKTLETASDMFRRVATAIAQADAVFDKKADIGALSDKFYNMMTNFEFLP NSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFSRLRPANDVVMSTTGISSGPLSFMRVFDV ATETIKQGGTRRGANMAILRVDHPDIMDFIMCKADQRQLNNFNISVGITEAFMKAVDADEEYTLYNPRDKQPAGKQNARK VFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQPLLPYESCNLGSINLGKMVIHGKVDWDKLKEVVRTS VHFLDNVIEVNNYPLQQIDEMTRSNRKIGLGVMGWADMLIMLGIPYGSEESVELGEKVMQFINDEGHAASRQLAKTRGAF PNFKGSVYDKLGAEPIRNATVTTIAPTGTISIIANASSGVEPLFAVSYVRQVMDKNILVEVNPLFEKIAKTDGFYTDELM QRIAEHGTVQDISAIPEAVREVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPCEATIEDVEKVYRLAYESNCKGVT IYRDGSRDEQVLSVGKKEEVKAAAPVHVEDKRTGKRERPKALKGWTYQMQTGCGPLYITINEDNTGLFEVFTTMGKAGGC AASQCEAIGRMVSLAWRSGIQGRQVVKQLLGISCHAPSGFGDNKVLSCADAVAKAIQSHLSLTGAADVIEAPAFDRGACP ECGGVVEHEGGCAVCRVCGYSECA >Mature_744_residues MKKTVEKGVIPGLTKNALTVLEKRYLKRDQTGKTLETASDMFRRVATAIAQADAVFDKKADIGALSDKFYNMMTNFEFLP NSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFSRLRPANDVVMSTTGISSGPLSFMRVFDV ATETIKQGGTRRGANMAILRVDHPDIMDFIMCKADQRQLNNFNISVGITEAFMKAVDADEEYTLYNPRDKQPAGKQNARK VFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQPLLPYESCNLGSINLGKMVIHGKVDWDKLKEVVRTS VHFLDNVIEVNNYPLQQIDEMTRSNRKIGLGVMGWADMLIMLGIPYGSEESVELGEKVMQFINDEGHAASRQLAKTRGAF PNFKGSVYDKLGAEPIRNATVTTIAPTGTISIIANASSGVEPLFAVSYVRQVMDKNILVEVNPLFEKIAKTDGFYTDELM QRIAEHGTVQDISAIPEAVREVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPCEATIEDVEKVYRLAYESNCKGVT IYRDGSRDEQVLSVGKKEEVKAAAPVHVEDKRTGKRERPKALKGWTYQMQTGCGPLYITINEDNTGLFEVFTTMGKAGGC AASQCEAIGRMVSLAWRSGIQGRQVVKQLLGISCHAPSGFGDNKVLSCADAVAKAIQSHLSLTGAADVIEAPAFDRGACP ECGGVVEHEGGCAVCRVCGYSECA
Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]
COG id: COG0209
COG function: function code F; Ribonucleotide reductase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-cone domain [H]
Homologues:
Organism=Homo sapiens, GI4506749, Length=574, Percent_Identity=27.8745644599303, Blast_Score=205, Evalue=2e-52, Organism=Escherichia coli, GI1789030, Length=628, Percent_Identity=25, Blast_Score=146, Evalue=4e-36, Organism=Escherichia coli, GI2367133, Length=534, Percent_Identity=23.0337078651685, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17555242, Length=575, Percent_Identity=27.8260869565217, Blast_Score=216, Evalue=4e-56, Organism=Saccharomyces cerevisiae, GI6322123, Length=574, Percent_Identity=28.2229965156794, Blast_Score=204, Evalue=3e-53, Organism=Saccharomyces cerevisiae, GI6320914, Length=574, Percent_Identity=27.3519163763066, Blast_Score=191, Evalue=3e-49, Organism=Drosophila melanogaster, GI17352481, Length=567, Percent_Identity=28.3950617283951, Blast_Score=211, Evalue=2e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR013344 - InterPro: IPR013509 - InterPro: IPR000788 - InterPro: IPR008926 [H]
Pfam domain/function: PF03477 ATP-cone; PF02867 Ribonuc_red_lgC; PF00317 Ribonuc_red_lgN [H]
EC number: =1.17.4.1 [H]
Molecular weight: Translated: 81454; Mature: 81454
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTVEKGVIPGLTKNALTVLEKRYLKRDQTGKTLETASDMFRRVATAIAQADAVFDKKA CCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC DIGALSDKFYNMMTNFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALI CCCHHHHHHHHHHHCCEECCCCCHHHHCCHHHCCCEEEEEEECCCCHHHHHHHHHEEEEE HKSGGGTGFSFSRLRPANDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILR EECCCCCCCCHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEE VDHPDIMDFIMCKADQRQLNNFNISVGITEAFMKAVDADEEYTLYNPRDKQPAGKQNARK ECCCHHHHHHHHCCHHHHCCCEEEEEEHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHH VFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQPLLPYESCNLGSINLG HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC KMVIHGKVDWDKLKEVVRTSVHFLDNVIEVNNYPLQQIDEMTRSNRKIGLGVMGWADMLI CEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEHHHHHHHHH MLGIPYGSEESVELGEKVMQFINDEGHAASRQLAKTRGAFPNFKGSVYDKLGAEPIRNAT HHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCE VTTIAPTGTISIIANASSGVEPLFAVSYVRQVMDKNILVEVNPLFEKIAKTDGFYTDELM EEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCHHHHH QRIAEHGTVQDISAIPEAVREVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPCEAT HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCC IEDVEKVYRLAYESNCKGVTIYRDGSRDEQVLSVGKKEEVKAAAPVHVEDKRTGKRERPK HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCHHHCCCCCCCEECCCCCCCCCCCC ALKGWTYQMQTGCGPLYITINEDNTGLFEVFTTMGKAGGCAASQCEAIGRMVSLAWRSGI HHCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC QGRQVVKQLLGISCHAPSGFGDNKVLSCADAVAKAIQSHLSLTGAADVIEAPAFDRGACP CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCC ECGGVVEHEGGCAVCRVCGYSECA CCCCCEECCCCEEEEEECCCCCCC >Mature Secondary Structure MKKTVEKGVIPGLTKNALTVLEKRYLKRDQTGKTLETASDMFRRVATAIAQADAVFDKKA CCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC DIGALSDKFYNMMTNFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALI CCCHHHHHHHHHHHCCEECCCCCHHHHCCHHHCCCEEEEEEECCCCHHHHHHHHHEEEEE HKSGGGTGFSFSRLRPANDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILR EECCCCCCCCHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEE VDHPDIMDFIMCKADQRQLNNFNISVGITEAFMKAVDADEEYTLYNPRDKQPAGKQNARK ECCCHHHHHHHHCCHHHHCCCEEEEEEHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHH VFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQPLLPYESCNLGSINLG HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC KMVIHGKVDWDKLKEVVRTSVHFLDNVIEVNNYPLQQIDEMTRSNRKIGLGVMGWADMLI CEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEHHHHHHHHH MLGIPYGSEESVELGEKVMQFINDEGHAASRQLAKTRGAFPNFKGSVYDKLGAEPIRNAT HHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCE VTTIAPTGTISIIANASSGVEPLFAVSYVRQVMDKNILVEVNPLFEKIAKTDGFYTDELM EEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCHHHHH QRIAEHGTVQDISAIPEAVREVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPCEAT HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCC IEDVEKVYRLAYESNCKGVTIYRDGSRDEQVLSVGKKEEVKAAAPVHVEDKRTGKRERPK HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCHHHCCCCCCCEECCCCCCCCCCCC ALKGWTYQMQTGCGPLYITINEDNTGLFEVFTTMGKAGGCAASQCEAIGRMVSLAWRSGI HHCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC QGRQVVKQLLGISCHAPSGFGDNKVLSCADAVAKAIQSHLSLTGAADVIEAPAFDRGACP CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCC ECGGVVEHEGGCAVCRVCGYSECA CCCCCEECCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]