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The map label for this gene is ygiD [H]

Identifier: 197117588

GI number: 197117588

Start: 1392620

End: 1393402

Strand: Reverse

Name: ygiD [H]

Synonym: Gbem_1200

Alternate gene names: 197117588

Gene position: 1393402-1392620 (Counterclockwise)

Preceding gene: 197117589

Following gene: 308535224

Centisome position: 30.19

GC content: 57.98

Gene sequence:

>783_bases
ATGCCGGAACTGATGCCTGCAATCTTCTTCGGACACGGCAATCCGATGAACGCAATATCAACCAACAGCTACACCGAAAG
CTGGCGGCGTATCGGAGCGCAAATAGCGAAGCCGAAAGCCATAATTGCGATCTCGGCACACTGGTATGTGCCCGAAACCA
GCGTAACGATCAGCAGCATGCCTAAGACCATCCACGACTTCGGTGGCTTCCCGCCTGAGTTGTACCGGGTGCAGTATCCC
GCGCCTGGGGACCCTCAGCTTGCCCGTCGCGTCCAGCAACTGCTCGCGCCCTTGCCTGTCAACCTTGACGACACCTGGGG
ACTCGACCACGGAACCTGGTCGGTGCTCGTTCATGTCTATCCGAAAGCCGATATTCCTGTCGTGCAATTGAGCATCAATG
AAACCGAGCCCGCTTCCTTCCACTACGAACTCGGCAAAAAACTCGCGCCGCTGCGGGACGAGGGCATCCTCATCGTCGGC
AGCGGAAACCTCGTCCACAATCTGCACACCTACGCCTGGGGCCGACACATGCCTGACCCTTATGTTTGGGCGGTGAATTT
CGAGCTGGAGGCAAGACAGATGATGCTTGCGGGCGATTTCGAGCCGCTCGTCCGCTATGAAAAGCTCGGCCCGGAGGCAA
AGCTATCCATTCCGACGCCGGACCACTACCTGCCGCTGCTTTACGTGCTCGCGACCCGGCAACAGGGCGAAAGCATCACC
TTCCCGGTCGAAGGCATCGACGGCGGATCTATCTCAATGCTGTCAGTTTGTGTAGGTGGATAA

Upstream 100 bases:

>100_bases
TACCCCATGATTTATCTACCATTCTTGTATGCAGTTGATTCTGTTCTATACTGGATCCCACGAATTTGAAGCTCTGTGAA
AACGATGGAGGTAGACCAAC

Downstream 100 bases:

>100_bases
GCCAGCCTGCCCCCCCTGCCCCTAAATCAACCGTCCTCCACCGTCAAATGTTCCCGGGCGAAAAAACGCACCCGTCGCCG
TCCCCAGAAATAATTTGTCG

Product: LigB family aromatic ring-opening extradiol dioxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MPELMPAIFFGHGNPMNAISTNSYTESWRRIGAQIAKPKAIIAISAHWYVPETSVTISSMPKTIHDFGGFPPELYRVQYP
APGDPQLARRVQQLLAPLPVNLDDTWGLDHGTWSVLVHVYPKADIPVVQLSINETEPASFHYELGKKLAPLRDEGILIVG
SGNLVHNLHTYAWGRHMPDPYVWAVNFELEARQMMLAGDFEPLVRYEKLGPEAKLSIPTPDHYLPLLYVLATRQQGESIT
FPVEGIDGGSISMLSVCVGG

Sequences:

>Translated_260_residues
MPELMPAIFFGHGNPMNAISTNSYTESWRRIGAQIAKPKAIIAISAHWYVPETSVTISSMPKTIHDFGGFPPELYRVQYP
APGDPQLARRVQQLLAPLPVNLDDTWGLDHGTWSVLVHVYPKADIPVVQLSINETEPASFHYELGKKLAPLRDEGILIVG
SGNLVHNLHTYAWGRHMPDPYVWAVNFELEARQMMLAGDFEPLVRYEKLGPEAKLSIPTPDHYLPLLYVLATRQQGESIT
FPVEGIDGGSISMLSVCVGG
>Mature_259_residues
PELMPAIFFGHGNPMNAISTNSYTESWRRIGAQIAKPKAIIAISAHWYVPETSVTISSMPKTIHDFGGFPPELYRVQYPA
PGDPQLARRVQQLLAPLPVNLDDTWGLDHGTWSVLVHVYPKADIPVVQLSINETEPASFHYELGKKLAPLRDEGILIVGS
GNLVHNLHTYAWGRHMPDPYVWAVNFELEARQMMLAGDFEPLVRYEKLGPEAKLSIPTPDHYLPLLYVLATRQQGESITF
PVEGIDGGSISMLSVCVGG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=260, Percent_Identity=54.6153846153846, Blast_Score=274, Evalue=5e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28820; Mature: 28689

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPELMPAIFFGHGNPMNAISTNSYTESWRRIGAQIAKPKAIIAISAHWYVPETSVTISSM
CCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEHHHC
PKTIHDFGGFPPELYRVQYPAPGDPQLARRVQQLLAPLPVNLDDTWGLDHGTWSVLVHVY
CHHHHHHCCCCHHHEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE
PKADIPVVQLSINETEPASFHYELGKKLAPLRDEGILIVGSGNLVHNLHTYAWGRHMPDP
CCCCCCEEEEEECCCCCCEEHHHHHCCCCCCCCCCEEEEECCCEEEHHHHHHCCCCCCCC
YVWAVNFELEARQMMLAGDFEPLVRYEKLGPEAKLSIPTPDHYLPLLYVLATRQQGESIT
EEEEEEEEECHHEEEECCCCHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEE
FPVEGIDGGSISMLSVCVGG
EEECCCCCCCEEEEEEEECC
>Mature Secondary Structure 
PELMPAIFFGHGNPMNAISTNSYTESWRRIGAQIAKPKAIIAISAHWYVPETSVTISSM
CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEHHHC
PKTIHDFGGFPPELYRVQYPAPGDPQLARRVQQLLAPLPVNLDDTWGLDHGTWSVLVHVY
CHHHHHHCCCCHHHEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE
PKADIPVVQLSINETEPASFHYELGKKLAPLRDEGILIVGSGNLVHNLHTYAWGRHMPDP
CCCCCCEEEEEECCCCCCEEHHHHHCCCCCCCCCCEEEEECCCEEEHHHHHHCCCCCCCC
YVWAVNFELEARQMMLAGDFEPLVRYEKLGPEAKLSIPTPDHYLPLLYVLATRQQGESIT
EEEEEEEEECHHEEEECCCCHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEE
FPVEGIDGGSISMLSVCVGG
EEECCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]