| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117541
Identifier: 197117541
GI number: 197117541
Start: 1332823
End: 1335699
Strand: Direct
Name: 197117541
Synonym: Gbem_1153
Alternate gene names: NA
Gene position: 1332823-1335699 (Clockwise)
Preceding gene: 197117540
Following gene: 197117542
Centisome position: 28.88
GC content: 64.72
Gene sequence:
>2877_bases ATGTTACCTAAGTACGGAGGACGATGTTTGTTCGGGTTGGCACTTCTGGTGCTGACACTGATGACGCTTGGTGCCGGACA GGCACAAGCTGCTTCGCAGTACAGCTATGACTGTACCTTCTGTCACCAAATGCCGCCGCTGGATTCCGCCAACGCGAAGA AGGACCCCAACACGGGCGCCATTCCCGGCAACCACCAGGGTCACGCTTCGGCAGCGGTCAATTCCTGCGCCAAGTGCCAC GGCGACGTGAGCGGCTACGCCATGGGCCACAGGAACAAGACCATCGAGCTTGCCGACGGCATCGGCTACTCGCGGAAGAT CGCAGCCGGGTTCGTGAACCAGACCTCGGTACCGCCGACCCCGATGGGTTCCTGCTCCACCGCGGCCTGCCACAGTAACG GCAAGGGCACCCTTAAGGCCACCCCGGCCTGGGGCGCTGCACCGTTCCAGGCTCCCGGCGACTGCTCCCAGTGCCACGAC GTAGCTCCGGCTACCGGCAACCACCCGACACTCAATAGCAAGCACGCCTCCTACTTCGGCACCGGTACCGGCTCCTGCGT TAAGTGCCATACCGACCACAGCGCTCAGGCAAAGCCCTTCAGCCACGCAACCTCCGCCGGCCGTGCCATCGAAGTGGTGC TCCCCGACGGCGGCTCCTTCGCCGGCAACCAGTGCGCCAACCTCTACTGCCACAGCAACGGCCAGGGTAGCTTCACCCCG CCGACCTGGGGCGCTTCTCTTAGCTGCGCCGGCTGCCACGGCGACGCGACCAGCAACACCCTCTCCGGCAAGCACGCCAA ACACGTGAACAACGCCGGCTTCCTCGGCACCAACTACGGCTGCGTGGAGTGCCACTCCGCCACCGTGACCGACAACAACA CTATCGGCAACTTCAACAACCACGTCAACAAGAACAAAGACGTCGCGGGCGCCCACGTAGGGACCCCGGTTGCCGGGACC TGCTCCACCTCCTACTGCCACACCGACGGCAAGGGAGTCCAGAAGACGGTTACCTGGACCCAGACCCAGGCGCTGGACTG CAAAAGCTGCCACGGCTCCGACACGGCGCCTGGTGCTGTCGCCTCCATCGCCGGCGAGCCTAACTACAAGAACGACGGTA TGGACCAGCCGCGCGCCAACAGCCACGCAAACCACGTATTCAGCGCTGCCAGCTGCCAGAACTGCCACGTCAACACCACC ACCGACGGCCTGACCATCAAGGCCGGCGCTCCGCACACCGACGGCACCCGCAACGTAGCAGCCGGCAACGGCAAGAGCTT CACCATCGCAGGGAACAGCTGCTCCGCAGTATCCTGCCACGACGGCGGCGGCAAGATCGCAGGCGTCGGCGCTGCCAAAT GGGGCCAGTCGCTTGGCTGCAACGGCTGCCACGGCGACGCCGCAACCCTTACCACCAACGCCCACGCGGCTCACGTTTCC ACCAAGGGCTATGCCTGCGACACCTGCCACGCGCAGACCGTCACCGGCAGCACCACCTTTGCCGACAAGACCCTGCACGG CGACGCCATCGTCGAGGTTGCCGGCGTCAAGGTAACCAGCTTCGCCACCGACACCAAGAACTGCGCCACTTCCTGCCACC TTTCCGGCACCCCGAAGTGGAACGACAAGAACTCCGGCGCTTGCGGTACCTGCCATAAAGCGCTTTCCACCACCGCGAAC GGCCTGGTGAGCAGCAACGCCCACTCCGCCCACTTCACCGCAACCTACGGCCCGGGCTTCGACGGCGCCGCTGCCACCTC CTGCTCCGGCTGCCATACCCCGAACACCGCGGCCAGCCACGCAGACGGCACGCTTAACCTCGCCATCGGCTACAACAAGA TCGGCACCTGCTCCTCCTGCCACAAGCAGTCGACCAACTGGACCACCGGGCGCGTTTCCTGCGAAAGCTGCCACAGCACC GCAGGGGGCCAGCTCTCCGTCATCGGCGCCCTCACCGCTCCGGACAAGACCCTGGCAGCGACCGCGGGCCACGGCAAGAC CGGAATCAACCAGTCCTGCTCCGCTTGCCACGACGCCAACTCCGCACACATCAACGGCATAGCCGGCGACCAGAAGCGTC TCTTGGGCGCCTTGACCGGCGCGGACAACCAGGAATGTAACTACTGCCACACCGACGCAGGCAAGGTGGCCGGCGCCGCT CTGAACGTGAAGGTGCACCGTCCCACCGGCGCACTCGGCGCCAAGTGCTCCGACTGCCACAACGCGCACGGTACCGCAAA CAGCATGATGATTAACGGCACGATCAACGGGACCGCGGTGAGCTTCACCACCGTCAACACCTTCGCCAACGGAGCACGCA CCGGCGTCTGCCAGGTCTGCCACACCACGACCCAGTACTTCACCAAGGCCGGGCAGCCGGAGGCAACCCACGTGGATTCC ACCACGAACTGCCTCGAGTGCCACCAGCACAACCCGGCAACCGGCCTCGCCTTCGTTCCCAACGGCGGATGCGACGCCTG CCATGGCTACCCGCCGGCTCCGAGAAAAACCATCTCCGCAGTCACCTTCGGTGTCCAGGGCAACTGGTCTTCCGCCCGCT TCGAAGACTACTCCGGCGGCGGCGGCGCCCACGCGGTTGCAGCTCACATCAAGAAAGACGCCAAGCCTTCCGAGGGTTGG GCAAACTGCCTCCCCTGCCACAACGGCGGCAACGATGCTCACTCAAGGGCGCTGCCGATCAGGAACCACGTGGACAACGT CACCGTCAAGATCGATCCGCAGTACCGCTTCAGCGACGATCCGTTCCTGGGCTACACTTCCGCCCAGCTGGTCAACGGCG GGGTCAACAAGTCCGGCAGCTGCTTCAACGTGAGCTGCCACTTCAAGAAGACCAAGCCGTGGAGTATCGAAAGGTAG
Upstream 100 bases:
>100_bases GGTGGAGCAGCGAAAGATAATCAAGTTTCTGGATCAAATACCGATTCAGCTTGAACAATAAAAAGGGCAACAAAGGAAAG TATCTAAATTGGAGGGAAAG
Downstream 100 bases:
>100_bases TAGATAGGCAACAATAGTATTAATTTGCTGTTAATGTTCAGTAAATACGTAGTAAATATGTCTGAATCATAGTACTAACG TAGTACCTAGGAAACTAGGT
Product: cytochrome c
Products: NA
Alternate protein names: Cytochrome C; High-Molecular-Weight Cytochrome C
Number of amino acids: Translated: 958; Mature: 958
Protein sequence:
>958_residues MLPKYGGRCLFGLALLVLTLMTLGAGQAQAASQYSYDCTFCHQMPPLDSANAKKDPNTGAIPGNHQGHASAAVNSCAKCH GDVSGYAMGHRNKTIELADGIGYSRKIAAGFVNQTSVPPTPMGSCSTAACHSNGKGTLKATPAWGAAPFQAPGDCSQCHD VAPATGNHPTLNSKHASYFGTGTGSCVKCHTDHSAQAKPFSHATSAGRAIEVVLPDGGSFAGNQCANLYCHSNGQGSFTP PTWGASLSCAGCHGDATSNTLSGKHAKHVNNAGFLGTNYGCVECHSATVTDNNTIGNFNNHVNKNKDVAGAHVGTPVAGT CSTSYCHTDGKGVQKTVTWTQTQALDCKSCHGSDTAPGAVASIAGEPNYKNDGMDQPRANSHANHVFSAASCQNCHVNTT TDGLTIKAGAPHTDGTRNVAAGNGKSFTIAGNSCSAVSCHDGGGKIAGVGAAKWGQSLGCNGCHGDAATLTTNAHAAHVS TKGYACDTCHAQTVTGSTTFADKTLHGDAIVEVAGVKVTSFATDTKNCATSCHLSGTPKWNDKNSGACGTCHKALSTTAN GLVSSNAHSAHFTATYGPGFDGAAATSCSGCHTPNTAASHADGTLNLAIGYNKIGTCSSCHKQSTNWTTGRVSCESCHST AGGQLSVIGALTAPDKTLAATAGHGKTGINQSCSACHDANSAHINGIAGDQKRLLGALTGADNQECNYCHTDAGKVAGAA LNVKVHRPTGALGAKCSDCHNAHGTANSMMINGTINGTAVSFTTVNTFANGARTGVCQVCHTTTQYFTKAGQPEATHVDS TTNCLECHQHNPATGLAFVPNGGCDACHGYPPAPRKTISAVTFGVQGNWSSARFEDYSGGGGAHAVAAHIKKDAKPSEGW ANCLPCHNGGNDAHSRALPIRNHVDNVTVKIDPQYRFSDDPFLGYTSAQLVNGGVNKSGSCFNVSCHFKKTKPWSIER
Sequences:
>Translated_958_residues MLPKYGGRCLFGLALLVLTLMTLGAGQAQAASQYSYDCTFCHQMPPLDSANAKKDPNTGAIPGNHQGHASAAVNSCAKCH GDVSGYAMGHRNKTIELADGIGYSRKIAAGFVNQTSVPPTPMGSCSTAACHSNGKGTLKATPAWGAAPFQAPGDCSQCHD VAPATGNHPTLNSKHASYFGTGTGSCVKCHTDHSAQAKPFSHATSAGRAIEVVLPDGGSFAGNQCANLYCHSNGQGSFTP PTWGASLSCAGCHGDATSNTLSGKHAKHVNNAGFLGTNYGCVECHSATVTDNNTIGNFNNHVNKNKDVAGAHVGTPVAGT CSTSYCHTDGKGVQKTVTWTQTQALDCKSCHGSDTAPGAVASIAGEPNYKNDGMDQPRANSHANHVFSAASCQNCHVNTT TDGLTIKAGAPHTDGTRNVAAGNGKSFTIAGNSCSAVSCHDGGGKIAGVGAAKWGQSLGCNGCHGDAATLTTNAHAAHVS TKGYACDTCHAQTVTGSTTFADKTLHGDAIVEVAGVKVTSFATDTKNCATSCHLSGTPKWNDKNSGACGTCHKALSTTAN GLVSSNAHSAHFTATYGPGFDGAAATSCSGCHTPNTAASHADGTLNLAIGYNKIGTCSSCHKQSTNWTTGRVSCESCHST AGGQLSVIGALTAPDKTLAATAGHGKTGINQSCSACHDANSAHINGIAGDQKRLLGALTGADNQECNYCHTDAGKVAGAA LNVKVHRPTGALGAKCSDCHNAHGTANSMMINGTINGTAVSFTTVNTFANGARTGVCQVCHTTTQYFTKAGQPEATHVDS TTNCLECHQHNPATGLAFVPNGGCDACHGYPPAPRKTISAVTFGVQGNWSSARFEDYSGGGGAHAVAAHIKKDAKPSEGW ANCLPCHNGGNDAHSRALPIRNHVDNVTVKIDPQYRFSDDPFLGYTSAQLVNGGVNKSGSCFNVSCHFKKTKPWSIER >Mature_958_residues MLPKYGGRCLFGLALLVLTLMTLGAGQAQAASQYSYDCTFCHQMPPLDSANAKKDPNTGAIPGNHQGHASAAVNSCAKCH GDVSGYAMGHRNKTIELADGIGYSRKIAAGFVNQTSVPPTPMGSCSTAACHSNGKGTLKATPAWGAAPFQAPGDCSQCHD VAPATGNHPTLNSKHASYFGTGTGSCVKCHTDHSAQAKPFSHATSAGRAIEVVLPDGGSFAGNQCANLYCHSNGQGSFTP PTWGASLSCAGCHGDATSNTLSGKHAKHVNNAGFLGTNYGCVECHSATVTDNNTIGNFNNHVNKNKDVAGAHVGTPVAGT CSTSYCHTDGKGVQKTVTWTQTQALDCKSCHGSDTAPGAVASIAGEPNYKNDGMDQPRANSHANHVFSAASCQNCHVNTT TDGLTIKAGAPHTDGTRNVAAGNGKSFTIAGNSCSAVSCHDGGGKIAGVGAAKWGQSLGCNGCHGDAATLTTNAHAAHVS TKGYACDTCHAQTVTGSTTFADKTLHGDAIVEVAGVKVTSFATDTKNCATSCHLSGTPKWNDKNSGACGTCHKALSTTAN GLVSSNAHSAHFTATYGPGFDGAAATSCSGCHTPNTAASHADGTLNLAIGYNKIGTCSSCHKQSTNWTTGRVSCESCHST AGGQLSVIGALTAPDKTLAATAGHGKTGINQSCSACHDANSAHINGIAGDQKRLLGALTGADNQECNYCHTDAGKVAGAA LNVKVHRPTGALGAKCSDCHNAHGTANSMMINGTINGTAVSFTTVNTFANGARTGVCQVCHTTTQYFTKAGQPEATHVDS TTNCLECHQHNPATGLAFVPNGGCDACHGYPPAPRKTISAVTFGVQGNWSSARFEDYSGGGGAHAVAAHIKKDAKPSEGW ANCLPCHNGGNDAHSRALPIRNHVDNVTVKIDPQYRFSDDPFLGYTSAQLVNGGVNKSGSCFNVSCHFKKTKPWSIER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 97884; Mature: 97884
Theoretical pI: Translated: 7.89; Mature: 7.89
Prosite motif: PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.7 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 5.7 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPKYGGRCLFGLALLVLTLMTLGAGQAQAASQYSYDCTFCHQMPPLDSANAKKDPNTGA CCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCC IPGNHQGHASAAVNSCAKCHGDVSGYAMGHRNKTIELADGIGYSRKIAAGFVNQTSVPPT CCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCCHHHHHHCCCCCCCCCC PMGSCSTAACHSNGKGTLKATPAWGAAPFQAPGDCSQCHDVAPATGNHPTLNSKHASYFG CCCCCCCHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEEE TGTGSCVKCHTDHSAQAKPFSHATSAGRAIEVVLPDGGSFAGNQCANLYCHSNGQGSFTP CCCCCEEEEECCCCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCC PTWGASLSCAGCHGDATSNTLSGKHAKHVNNAGFLGTNYGCVECHSATVTDNNTIGNFNN CCCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCEEECCCCCCCCCCC HVNKNKDVAGAHVGTPVAGTCSTSYCHTDGKGVQKTVTWTQTQALDCKSCHGSDTAPGAV CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCE ASIAGEPNYKNDGMDQPRANSHANHVFSAASCQNCHVNTTTDGLTIKAGAPHTDGTRNVA EEECCCCCCCCCCCCCCCCCCCHHHEEECCCCCCCEEECCCCCEEEECCCCCCCCCCCEE AGNGKSFTIAGNSCSAVSCHDGGGKIAGVGAAKWGQSLGCNGCHGDAATLTTNAHAAHVS CCCCCEEEEECCCCCEEEEECCCCEEEECCHHHCCCCCCCCCCCCCCEEEEECCCEEEEE TKGYACDTCHAQTVTGSTTFADKTLHGDAIVEVAGVKVTSFATDTKNCATSCHLSGTPKW CCCCEECCCCCEEECCCCEECCCCCCCCEEEEEECEEEEEECCCCCCCCCEEECCCCCCC NDKNSGACGTCHKALSTTANGLVSSNAHSAHFTATYGPGFDGAAATSCSGCHTPNTAASH CCCCCCCCHHHHHHHHHHHCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC ADGTLNLAIGYNKIGTCSSCHKQSTNWTTGRVSCESCHSTAGGQLSVIGALTAPDKTLAA CCCEEEEEECCCCCCCCHHHHCCCCCCCCCEEEHHHHCCCCCCEEEEEEEECCCCCCEEE TAGHGKTGINQSCSACHDANSAHINGIAGDQKRLLGALTGADNQECNYCHTDAGKVAGAA ECCCCCCCCCCCHHHHHCCCCCEEECCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCEE LNVKVHRPTGALGAKCSDCHNAHGTANSMMINGTINGTAVSFTTVNTFANGARTGVCQVC EEEEEECCCCCCCCCCHHHCCCCCCCCCEEEEEEECCEEEEEEEEHHHCCCCCCCHHHHH HTTTQYFTKAGQPEATHVDSTTNCLECHQHNPATGLAFVPNGGCDACHGYPPAPRKTISA HHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEE VTFGVQGNWSSARFEDYSGGGGAHAVAAHIKKDAKPSEGWANCLPCHNGGNDAHSRALPI EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCCCCCCCHHHHCCCCC RNHVDNVTVKIDPQYRFSDDPFLGYTSAQLVNGGVNKSGSCFNVSCHFKKTKPWSIER CCCCCEEEEEECCCEEECCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCC >Mature Secondary Structure MLPKYGGRCLFGLALLVLTLMTLGAGQAQAASQYSYDCTFCHQMPPLDSANAKKDPNTGA CCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCC IPGNHQGHASAAVNSCAKCHGDVSGYAMGHRNKTIELADGIGYSRKIAAGFVNQTSVPPT CCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCCHHHHHHCCCCCCCCCC PMGSCSTAACHSNGKGTLKATPAWGAAPFQAPGDCSQCHDVAPATGNHPTLNSKHASYFG CCCCCCCHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEEE TGTGSCVKCHTDHSAQAKPFSHATSAGRAIEVVLPDGGSFAGNQCANLYCHSNGQGSFTP CCCCCEEEEECCCCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCC PTWGASLSCAGCHGDATSNTLSGKHAKHVNNAGFLGTNYGCVECHSATVTDNNTIGNFNN CCCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCEEECCCCCCCCCCC HVNKNKDVAGAHVGTPVAGTCSTSYCHTDGKGVQKTVTWTQTQALDCKSCHGSDTAPGAV CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCE ASIAGEPNYKNDGMDQPRANSHANHVFSAASCQNCHVNTTTDGLTIKAGAPHTDGTRNVA EEECCCCCCCCCCCCCCCCCCCHHHEEECCCCCCCEEECCCCCEEEECCCCCCCCCCCEE AGNGKSFTIAGNSCSAVSCHDGGGKIAGVGAAKWGQSLGCNGCHGDAATLTTNAHAAHVS CCCCCEEEEECCCCCEEEEECCCCEEEECCHHHCCCCCCCCCCCCCCEEEEECCCEEEEE TKGYACDTCHAQTVTGSTTFADKTLHGDAIVEVAGVKVTSFATDTKNCATSCHLSGTPKW CCCCEECCCCCEEECCCCEECCCCCCCCEEEEEECEEEEEECCCCCCCCCEEECCCCCCC NDKNSGACGTCHKALSTTANGLVSSNAHSAHFTATYGPGFDGAAATSCSGCHTPNTAASH CCCCCCCCHHHHHHHHHHHCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC ADGTLNLAIGYNKIGTCSSCHKQSTNWTTGRVSCESCHSTAGGQLSVIGALTAPDKTLAA CCCEEEEEECCCCCCCCHHHHCCCCCCCCCEEEHHHHCCCCCCEEEEEEEECCCCCCEEE TAGHGKTGINQSCSACHDANSAHINGIAGDQKRLLGALTGADNQECNYCHTDAGKVAGAA ECCCCCCCCCCCHHHHHCCCCCEEECCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCEE LNVKVHRPTGALGAKCSDCHNAHGTANSMMINGTINGTAVSFTTVNTFANGARTGVCQVC EEEEEECCCCCCCCCCHHHCCCCCCCCCEEEEEEECCEEEEEEEEHHHCCCCCCCHHHHH HTTTQYFTKAGQPEATHVDSTTNCLECHQHNPATGLAFVPNGGCDACHGYPPAPRKTISA HHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEE VTFGVQGNWSSARFEDYSGGGGAHAVAAHIKKDAKPSEGWANCLPCHNGGNDAHSRALPI EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCCCCCCCHHHHCCCCC RNHVDNVTVKIDPQYRFSDDPFLGYTSAQLVNGGVNKSGSCFNVSCHFKKTKPWSIER CCCCCEEEEEECCCEEECCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA