| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117451
Identifier: 197117451
GI number: 197117451
Start: 1234049
End: 1235122
Strand: Direct
Name: 197117451
Synonym: Gbem_1062
Alternate gene names: NA
Gene position: 1234049-1235122 (Clockwise)
Preceding gene: 197117450
Following gene: 197117452
Centisome position: 26.74
GC content: 61.27
Gene sequence:
>1074_bases ATGAAGATCCTTCAGGGGCAACCCAAGGGGCAGATACTGCTCCTCGCCGCCTTGGCAGTCGATGCCGGCAGGGCATACGG GGTGAAGGCGAAGCTCCATGCTGCGGTCGACGCCGCAAGCTATGAGGCGGCCAAGGCCCTGGCACAGGGGGAAGATGAGG ACGACATGAAGGAAAAGGCGAGCGAGGCTGCGTTCGACTACTTCAGGGCGAACTTCCCATCTGACTATTTCGGAGCGCAG TGCAGCGGACCGGAATTGGAGCTGAGCGAACGGAAGTCTGAACAAAAGATGCGCGCCCTCTCCGTTTCCGCCACAGCGAG GCTCCCAAACATCTTTGCCGGGATCCTCGGCTGGAAAAGCATCGATCTTCCCGCCCGGTCGCGCGCGGTCAGGAAAGATG CCGACGTGGTGCTGGTGCTGGAGTCCTCGGACGCGCTTAGGGACTCGTTCCCCCAGGTGAAGCAGCGGGTTGCCACCTTC AGCGACCGCTTCAGCCAACACGATGACCGGATGTCGCTGGTGACTTTTGCCGCGGGAGCCGACCCGGTAATTTCCATCTG CGGCGTCTATAACCCCGCAAAAGACCGCCCCGGAGCGGGAACTTTCAACTGCGGCAGTGGGTATCAGAAAAGCAATTTCG CCAAAGCCTTTCTGGAGCTGAGTCCGCAGATGGCTGCCGCCGCAGCGGCCCCCGAGGATGCGATGAAGCAGGCGCAGGCC CAACTGGACGGCCTGAGGAGCGACCTGCGGGCGAAGAAGAGGGCGATAGTGCTTTTGGCAAGCGATGTAGCTGCAAGCAA CATTAAAGAAGAGACCGCCGCTACGGCTCGCAAGGAGAAGGTATTCATCCATGCGGTGGAAATCGCGGGATCCCTGAAGG CAAGCACACCGGCCGGGGCCGCTAACGGTCGGAGCGGAGGCGAGAACATGAAGCGGCTCGCCAACAGCAGGGACTCCGGA GCCCACGAAAAGGAAGAACCAACCGGCTCGTACTGCGCAGCGACCGACCTGCAGCAGTTGGAGCTGTGCCTGGAAAAGAT CGCCAACGGCATGACCGTGAGCATCGAGCAGTAA
Upstream 100 bases:
>100_bases CTTCGAGGTGCTGTACCGGTATGACAGCTTCTTCAAGTCGGGCGCCGGTGGATTTGCGCCGGTGCTTCACTCACAAACCA TCTTTTAGCAGGGGCGGGAA
Downstream 100 bases:
>100_bases GCTGGCGAGGAAGCAAGGTGCGGCGAGGCTGCACCGGCGGGGGGGCGTGTGCAAGCAGAGGGCGAAAAGGGCATAGAGGA ATCCGGCCGAACAAGGCTTT
Product: VWFA superfamily protein
Products: NA
Alternate protein names: VWFA Superfamily Protein
Number of amino acids: Translated: 357; Mature: 357
Protein sequence:
>357_residues MKILQGQPKGQILLLAALAVDAGRAYGVKAKLHAAVDAASYEAAKALAQGEDEDDMKEKASEAAFDYFRANFPSDYFGAQ CSGPELELSERKSEQKMRALSVSATARLPNIFAGILGWKSIDLPARSRAVRKDADVVLVLESSDALRDSFPQVKQRVATF SDRFSQHDDRMSLVTFAAGADPVISICGVYNPAKDRPGAGTFNCGSGYQKSNFAKAFLELSPQMAAAAAAPEDAMKQAQA QLDGLRSDLRAKKRAIVLLASDVAASNIKEETAATARKEKVFIHAVEIAGSLKASTPAGAANGRSGGENMKRLANSRDSG AHEKEEPTGSYCAATDLQQLELCLEKIANGMTVSIEQ
Sequences:
>Translated_357_residues MKILQGQPKGQILLLAALAVDAGRAYGVKAKLHAAVDAASYEAAKALAQGEDEDDMKEKASEAAFDYFRANFPSDYFGAQ CSGPELELSERKSEQKMRALSVSATARLPNIFAGILGWKSIDLPARSRAVRKDADVVLVLESSDALRDSFPQVKQRVATF SDRFSQHDDRMSLVTFAAGADPVISICGVYNPAKDRPGAGTFNCGSGYQKSNFAKAFLELSPQMAAAAAAPEDAMKQAQA QLDGLRSDLRAKKRAIVLLASDVAASNIKEETAATARKEKVFIHAVEIAGSLKASTPAGAANGRSGGENMKRLANSRDSG AHEKEEPTGSYCAATDLQQLELCLEKIANGMTVSIEQ >Mature_357_residues MKILQGQPKGQILLLAALAVDAGRAYGVKAKLHAAVDAASYEAAKALAQGEDEDDMKEKASEAAFDYFRANFPSDYFGAQ CSGPELELSERKSEQKMRALSVSATARLPNIFAGILGWKSIDLPARSRAVRKDADVVLVLESSDALRDSFPQVKQRVATF SDRFSQHDDRMSLVTFAAGADPVISICGVYNPAKDRPGAGTFNCGSGYQKSNFAKAFLELSPQMAAAAAAPEDAMKQAQA QLDGLRSDLRAKKRAIVLLASDVAASNIKEETAATARKEKVFIHAVEIAGSLKASTPAGAANGRSGGENMKRLANSRDSG AHEKEEPTGSYCAATDLQQLELCLEKIANGMTVSIEQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38021; Mature: 38021
Theoretical pI: Translated: 6.92; Mature: 6.92
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKILQGQPKGQILLLAALAVDAGRAYGVKAKLHAAVDAASYEAAKALAQGEDEDDMKEKA CCCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH SEAAFDYFRANFPSDYFGAQCSGPELELSERKSEQKMRALSVSATARLPNIFAGILGWKS HHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC IDLPARSRAVRKDADVVLVLESSDALRDSFPQVKQRVATFSDRFSQHDDRMSLVTFAAGA CCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC DPVISICGVYNPAKDRPGAGTFNCGSGYQKSNFAKAFLELSPQMAAAAAAPEDAMKQAQA CHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHH QLDGLRSDLRAKKRAIVLLASDVAASNIKEETAATARKEKVFIHAVEIAGSLKASTPAGA HHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHEEEEEEEHHCCCCCCCCCCC ANGRSGGENMKRLANSRDSGAHEKEEPTGSYCAATDLQQLELCLEKIANGMTVSIEQ CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCCCEEEEEC >Mature Secondary Structure MKILQGQPKGQILLLAALAVDAGRAYGVKAKLHAAVDAASYEAAKALAQGEDEDDMKEKA CCCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH SEAAFDYFRANFPSDYFGAQCSGPELELSERKSEQKMRALSVSATARLPNIFAGILGWKS HHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC IDLPARSRAVRKDADVVLVLESSDALRDSFPQVKQRVATFSDRFSQHDDRMSLVTFAAGA CCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC DPVISICGVYNPAKDRPGAGTFNCGSGYQKSNFAKAFLELSPQMAAAAAAPEDAMKQAQA CHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHH QLDGLRSDLRAKKRAIVLLASDVAASNIKEETAATARKEKVFIHAVEIAGSLKASTPAGA HHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHEEEEEEEHHCCCCCCCCCCC ANGRSGGENMKRLANSRDSGAHEKEEPTGSYCAATDLQQLELCLEKIANGMTVSIEQ CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA