Click here to switch to the map view.

The map label for this gene is cpaB-1

Identifier: 197117447

GI number: 197117447

Start: 1231266

End: 1232141

Strand: Reverse

Name: cpaB-1

Synonym: Gbem_1058

Alternate gene names: NA

Gene position: 1232141-1231266 (Counterclockwise)

Preceding gene: 197117448

Following gene: 197117446

Centisome position: 26.7

GC content: 64.61

Gene sequence:

>876_bases
ATGACTCGCCCTAAAGCGGTAATTCTCGTCTCGGTGTTCGCGCTGTTCTTCGCGGCGATGGCCGCTTGGCTTGCCTACAG
TTTCCTGCAGCAGGAGGTCAAAAGCGCCAAGGCGGCCCAGCCCCAAAGGATAGTGGTCGCCGCAGTCGACATCCCCATCG
GGACCGCGATCACCCCAGCGCAGCTCAAGGTCGCCTCCTGGCCCAAGGACAGCATCCCCCCGGGGAGCGCCCGGGGTATC
GAAGCGGTGGCGAACCGCGTTGCCATCCGCCCCATAACCGGCGGCGACGCGGTCACCGAGGCAAAGCTAAAGCCCAGGTC
CGGCGCACCGGGAGCCGGCTTCATGACCTACGTCGTGCCGCAGGGGCACCGTGCGGTGACGGTGGCAGTGAACGAGGTGG
CGGGAGTGGCAGGTTTTCTAACCCCGAGCGACCGCGTGGATGTGATCGTTACCACGCCGGTTCCAGGCAACGAGAAGGAG
AACATCAGCAAGATCGTACTGGAAAACGTCCCCATCCTGGCCACCGGGCAGGTGACGGACCAGAAGGAGGGAAAACCGGT
CGTGGTCCCGACGGTCACCCTCGACCTCGTCCCGGACGATGCGGAAAAGCTGGTCCTCTCCGCCAGCAAGGGTTCGCTGC
AGCTTTTGCTGCGCAACATTTCCGACAGCTCCCATGTCGACTCCAAGGGAGCCACCATAGGAAAGGTGCTCTACGGCAGC
GCGCTTCCCGTGAAGGTCGCCACGCTGCACCCCCCTCCCCCGGCAAAGAGGGAGCCCAGGTCCGCCGCCGCGATGAGGAC
TCCCCCGCCGCGCCCAAGCTACACCCTGGACATCGTCCGGGGAACCGAGAAGGTTTCCAAGCAGTACGCCGAATAA

Upstream 100 bases:

>100_bases
CGTCATGAAGGATCTGCCCCGGGGGCCCGGAAATGCGTGCCGCGCACCCACGCTGCCGCTCCGGGCACCCTTTCGCTGCA
TGTAAAGAGGAGAAAAGGAC

Downstream 100 bases:

>100_bases
TCCCGATGCCCAAACAATCCCGCAGCGAGCGAGGTAGCCCATGAGATGCATCCCCTCAAAACCGTGCCTGGCCTTCCTGC
TTTTCTGCCTCGGCCTTCTC

Product: Flp pilus assembly protein CpaB

Products: NA

Alternate protein names: Flp Pilus Assembly CpaB; SAF Domain-Containing Protein; Pilus Assembly Protein CpaB; Pilus Assembly Transmembrane Protein; Pilus Assembly Protein; Flp Pilus Assembly Protein; Flp Pilus Assembly CpaB Domain Protein; Flp Pilus Assembly Protein RcpC/CpaB; CpaB Pilus Assembly Protein; CtpC Protein; Pilus Assembly-Related Exported Protein; Pilus Assembly Domain-Containing Protein; CpaB2 Flp Pilus Assembly Protein CpaB; Flp Pilus Assembly Protein CpaB-Like Protein

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MTRPKAVILVSVFALFFAAMAAWLAYSFLQQEVKSAKAAQPQRIVVAAVDIPIGTAITPAQLKVASWPKDSIPPGSARGI
EAVANRVAIRPITGGDAVTEAKLKPRSGAPGAGFMTYVVPQGHRAVTVAVNEVAGVAGFLTPSDRVDVIVTTPVPGNEKE
NISKIVLENVPILATGQVTDQKEGKPVVVPTVTLDLVPDDAEKLVLSASKGSLQLLLRNISDSSHVDSKGATIGKVLYGS
ALPVKVATLHPPPPAKREPRSAAAMRTPPPRPSYTLDIVRGTEKVSKQYAE

Sequences:

>Translated_291_residues
MTRPKAVILVSVFALFFAAMAAWLAYSFLQQEVKSAKAAQPQRIVVAAVDIPIGTAITPAQLKVASWPKDSIPPGSARGI
EAVANRVAIRPITGGDAVTEAKLKPRSGAPGAGFMTYVVPQGHRAVTVAVNEVAGVAGFLTPSDRVDVIVTTPVPGNEKE
NISKIVLENVPILATGQVTDQKEGKPVVVPTVTLDLVPDDAEKLVLSASKGSLQLLLRNISDSSHVDSKGATIGKVLYGS
ALPVKVATLHPPPPAKREPRSAAAMRTPPPRPSYTLDIVRGTEKVSKQYAE
>Mature_290_residues
TRPKAVILVSVFALFFAAMAAWLAYSFLQQEVKSAKAAQPQRIVVAAVDIPIGTAITPAQLKVASWPKDSIPPGSARGIE
AVANRVAIRPITGGDAVTEAKLKPRSGAPGAGFMTYVVPQGHRAVTVAVNEVAGVAGFLTPSDRVDVIVTTPVPGNEKEN
ISKIVLENVPILATGQVTDQKEGKPVVVPTVTLDLVPDDAEKLVLSASKGSLQLLLRNISDSSHVDSKGATIGKVLYGSA
LPVKVATLHPPPPAKREPRSAAAMRTPPPRPSYTLDIVRGTEKVSKQYAE

Specific function: Unknown

COG id: COG3745

COG function: function code U; Flp pilus assembly protein CpaB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30566; Mature: 30435

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPKAVILVSVFALFFAAMAAWLAYSFLQQEVKSAKAAQPQRIVVAAVDIPIGTAITPA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCC
QLKVASWPKDSIPPGSARGIEAVANRVAIRPITGGDAVTEAKLKPRSGAPGAGFMTYVVP
EEEEECCCCCCCCCCCCCHHHHHHCCEEEEEECCCCCEEECCCCCCCCCCCCCEEEEEEC
QGHRAVTVAVNEVAGVAGFLTPSDRVDVIVTTPVPGNEKENISKIVLENVPILATGQVTD
CCCEEEEEEEEHHHCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCC
QKEGKPVVVPTVTLDLVPDDAEKLVLSASKGSLQLLLRNISDSSHVDSKGATIGKVLYGS
CCCCCEEEEEEEEEEECCCCHHHEEEECCCCCHHHHHHHCCCCCCCCCCCCEEHHHHCCC
ALPVKVATLHPPPPAKREPRSAAAMRTPPPRPSYTLDIVRGTEKVSKQYAE
CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCC
>Mature Secondary Structure 
TRPKAVILVSVFALFFAAMAAWLAYSFLQQEVKSAKAAQPQRIVVAAVDIPIGTAITPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCC
QLKVASWPKDSIPPGSARGIEAVANRVAIRPITGGDAVTEAKLKPRSGAPGAGFMTYVVP
EEEEECCCCCCCCCCCCCHHHHHHCCEEEEEECCCCCEEECCCCCCCCCCCCCEEEEEEC
QGHRAVTVAVNEVAGVAGFLTPSDRVDVIVTTPVPGNEKENISKIVLENVPILATGQVTD
CCCEEEEEEEEHHHCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCC
QKEGKPVVVPTVTLDLVPDDAEKLVLSASKGSLQLLLRNISDSSHVDSKGATIGKVLYGS
CCCCCEEEEEEEEEEECCCCHHHEEEECCCCCHHHHHHHCCCCCCCCCCCCEEHHHHCCC
ALPVKVATLHPPPPAKREPRSAAAMRTPPPRPSYTLDIVRGTEKVSKQYAE
CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA