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The map label for this gene is cpaC-1 [C]

Identifier: 197117446

GI number: 197117446

Start: 1229870

End: 1231225

Strand: Reverse

Name: cpaC-1 [C]

Synonym: Gbem_1057

Alternate gene names: 197117446

Gene position: 1231225-1229870 (Counterclockwise)

Preceding gene: 197117447

Following gene: 197117445

Centisome position: 26.68

GC content: 62.46

Gene sequence:

>1356_bases
ATGAGATGCATCCCCTCAAAACCGTGCCTGGCCTTCCTGCTTTTCTGCCTCGGCCTTCTCGTCGAGGCGGCGACCGCAAC
AGCCGGCGTCCCGACCACCGTGATCGTCAACCGGGGGGTGGTTCTCAACCTGAAGAACCCGGCCCGCTACGTCAACATTA
CCGACAAGGACGTGATCGACGTCCCCGATCCCCTGCGCCGCAACCAGCTTCTCATCAACGGCAAGAAAATCGGCTCCACC
AACCTGATCGTGTGGGAGGAGAACAACGACAAGCCCACCTTTTTCGATGTCCGGGTGGTGGGGGACCGGGAGGCGATCGA
GTCCCAGATCAGGGACTACGCACCCAAAGACGACATCAGCGTCCAGTACGCCCAGGACACGGTGATCCTCTCCGGCAAGG
TCGCCAACGAGATGACCGGCAAGAAGGCCGAGGAGATCGCCAAGGCGTACTCCGCGAAGGTGTTGAACCACATCACCGTC
GACGAGCCGCAACAGGTGCTGCTGCAGGTCAAGGTGGCGCAGGTGGACCGGACCTCGCTGAAAAGGCTCGGCCTCAGCGC
CATCGTGAAGGGTAGGACGGCCGAGGGGTTCACGAACCTGGTGGGAGCCCCCAGCGGCACCAGCCGCAACACCGAATCGA
CGCCCACAAGGTTCACCTCCACCGAGGGGAACGGGATCGTTGGGAACATCCCCGGCATTGGGGGGTTCGACCCGCTGAAC
GCCTTCAACGTCGGGGTCTCCTACTTCCCAGCGGGGATCGGCGCCGTGCTCCAGGCCTTGAGCAGCAAGGGGCTCGCGAA
GATCCTCGCCGAGCCCAACCTGCTGGTGAAAAGCGGCGAAGAGGGGAATTTCCTCGCCGGGAGCAGGATCCCCTACAGCG
TGCTGATCTCGACCGGCGGGGCGTCCACCTCGTCCATCGTCTTCGAGACGGTTGGGGTGAAGCTCAAGTTCAAGCCGCAG
GTGCTGCAAAATGGCCTGATCAACCTGAAGATCGACCCGGCTGAGGTAAGCAGCATCGCCGGGACCCTAGCGGTCAACGG
CTACCCCATCATCGACACCAGGGACGTCCGCACCGACGTGGAACTGCGGGACGGCGAGAGCCTGGTTCTGGCGGGCCTGC
TCCAGGAAGAGCAGATCAAGAACATGTCCAAGATCCCCCTTTTGGGGGACATACCGATCCTCGGTGCGCTGTTTCGCTCC
TCGCAGAAAGACATCCGGGAAAAGGACCTGGTCTTTTTCATCACGCCGAAGATAGTGAAGCCCACTCCCGCAGGGGTCGC
GACCAAGCTCCCCACCGACGCCGTTACTCCCGAGGAGGAGAAGGGATACGACTGGATCCCGCGGGGAGGAAAGTGA

Upstream 100 bases:

>100_bases
AGCTACACCCTGGACATCGTCCGGGGAACCGAGAAGGTTTCCAAGCAGTACGCCGAATAATCCCGATGCCCAAACAATCC
CGCAGCGAGCGAGGTAGCCC

Downstream 100 bases:

>100_bases
GGGTCCACGCATGACCGCCGAAGCGTTCAAGGCAGCGGCGCTTCGGCCAAGGGGCTAACGTTATGACTTCCGAATTTTCC
ATAGCCGTCATCGAGCGGGA

Product: Flp pilus assembly secretin CpaC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MRCIPSKPCLAFLLFCLGLLVEAATATAGVPTTVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGST
NLIVWEENNDKPTFFDVRVVGDREAIESQIRDYAPKDDISVQYAQDTVILSGKVANEMTGKKAEEIAKAYSAKVLNHITV
DEPQQVLLQVKVAQVDRTSLKRLGLSAIVKGRTAEGFTNLVGAPSGTSRNTESTPTRFTSTEGNGIVGNIPGIGGFDPLN
AFNVGVSYFPAGIGAVLQALSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSIVFETVGVKLKFKPQ
VLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGESLVLAGLLQEEQIKNMSKIPLLGDIPILGALFRS
SQKDIREKDLVFFITPKIVKPTPAGVATKLPTDAVTPEEEKGYDWIPRGGK

Sequences:

>Translated_451_residues
MRCIPSKPCLAFLLFCLGLLVEAATATAGVPTTVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGST
NLIVWEENNDKPTFFDVRVVGDREAIESQIRDYAPKDDISVQYAQDTVILSGKVANEMTGKKAEEIAKAYSAKVLNHITV
DEPQQVLLQVKVAQVDRTSLKRLGLSAIVKGRTAEGFTNLVGAPSGTSRNTESTPTRFTSTEGNGIVGNIPGIGGFDPLN
AFNVGVSYFPAGIGAVLQALSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSIVFETVGVKLKFKPQ
VLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGESLVLAGLLQEEQIKNMSKIPLLGDIPILGALFRS
SQKDIREKDLVFFITPKIVKPTPAGVATKLPTDAVTPEEEKGYDWIPRGGK
>Mature_451_residues
MRCIPSKPCLAFLLFCLGLLVEAATATAGVPTTVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGST
NLIVWEENNDKPTFFDVRVVGDREAIESQIRDYAPKDDISVQYAQDTVILSGKVANEMTGKKAEEIAKAYSAKVLNHITV
DEPQQVLLQVKVAQVDRTSLKRLGLSAIVKGRTAEGFTNLVGAPSGTSRNTESTPTRFTSTEGNGIVGNIPGIGGFDPLN
AFNVGVSYFPAGIGAVLQALSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSIVFETVGVKLKFKPQ
VLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGESLVLAGLLQEEQIKNMSKIPLLGDIPILGALFRS
SQKDIREKDLVFFITPKIVKPTPAGVATKLPTDAVTPEEEKGYDWIPRGGK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=269, Percent_Identity=29.368029739777, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1789793, Length=169, Percent_Identity=35.5029585798817, Blast_Score=95, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 48357; Mature: 48357

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCIPSKPCLAFLLFCLGLLVEAATATAGVPTTVIVNRGVVLNLKNPARYVNITDKDVID
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCEEEEECCCCCCC
VPDPLRRNQLLINGKKIGSTNLIVWEENNDKPTFFDVRVVGDREAIESQIRDYAPKDDIS
CCCCCCCCEEEEECCEECCCEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHCCCCCCCE
VQYAQDTVILSGKVANEMTGKKAEEIAKAYSAKVLNHITVDEPQQVLLQVKVAQVDRTSL
EEEECCEEEEECCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
KRLGLSAIVKGRTAEGFTNLVGAPSGTSRNTESTPTRFTSTEGNGIVGNIPGIGGFDPLN
HHHCHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCC
AFNVGVSYFPAGIGAVLQALSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGG
HHHCCHHHHCHHHHHHHHHHHCCCHHHHHCCCCEEEECCCCCCEEECCCCCEEEEEECCC
ASTSSIVFETVGVKLKFKPQVLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDV
CCCCEEEEEEECEEEEECHHHHHCCCEEEEECHHHHHHHHHEEEECCEEEEECCCCCCCE
ELRDGESLVLAGLLQEEQIKNMSKIPLLGDIPILGALFRSSQKDIREKDLVFFITPKIVK
EECCCCEEEEHHHHHHHHHCCHHCCCCCCCCHHHHHHHHCHHHHHHHCCEEEEECCCEEC
PTPAGVATKLPTDAVTPEEEKGYDWIPRGGK
CCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRCIPSKPCLAFLLFCLGLLVEAATATAGVPTTVIVNRGVVLNLKNPARYVNITDKDVID
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCEEEEECCCCCCC
VPDPLRRNQLLINGKKIGSTNLIVWEENNDKPTFFDVRVVGDREAIESQIRDYAPKDDIS
CCCCCCCCEEEEECCEECCCEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHCCCCCCCE
VQYAQDTVILSGKVANEMTGKKAEEIAKAYSAKVLNHITVDEPQQVLLQVKVAQVDRTSL
EEEECCEEEEECCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
KRLGLSAIVKGRTAEGFTNLVGAPSGTSRNTESTPTRFTSTEGNGIVGNIPGIGGFDPLN
HHHCHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCC
AFNVGVSYFPAGIGAVLQALSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGG
HHHCCHHHHCHHHHHHHHHHHCCCHHHHHCCCCEEEECCCCCCEEECCCCCEEEEEECCC
ASTSSIVFETVGVKLKFKPQVLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDV
CCCCEEEEEEECEEEEECHHHHHCCCEEEEECHHHHHHHHHEEEECCEEEEECCCCCCCE
ELRDGESLVLAGLLQEEQIKNMSKIPLLGDIPILGALFRSSQKDIREKDLVFFITPKIVK
EECCCCEEEEHHHHHHHHHCCHHCCCCCCCCHHHHHHHHCHHHHHHHCCEEEEECCCEEC
PTPAGVATKLPTDAVTPEEEKGYDWIPRGGK
CCCCCCEECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]