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The map label for this gene is yiaD [H]

Identifier: 197117412

GI number: 197117412

Start: 1191135

End: 1191821

Strand: Reverse

Name: yiaD [H]

Synonym: Gbem_1022

Alternate gene names: 197117412

Gene position: 1191821-1191135 (Counterclockwise)

Preceding gene: 197117413

Following gene: 197117409

Centisome position: 25.82

GC content: 64.05

Gene sequence:

>687_bases
ATGAGAGCACGTTGGATCGTAAAACTGATTGTTGGAATGTCAGCGGTTGCCCTGTTAGCAACCGGTTGCGCTACGAACCC
GGATGGAAGCTACGAGTTCAAGAGGACCGGTATCGGCGCATTGGGCGGAGCGGCACTGGGCGCCGGTGCAGGCGCTCTCC
TCGGGGGCAAGTCGCACCGCGGCAGGAATGCAGCCATCGGTGGCCTTACCGGCGCAGTGGTCGGCGGCGCGGTCGGCCAG
TACATGGACCGCCAGGCAGTGGCGCTCAAAAAGAGCATGCCCGAAGCCGAGGTGGTTCGCGACGGCGACAAGGTGTACGT
CGCGCTGCCGTCCGGCATCCTGTTCGACTTGGGGAAGGACGCCCTGAAACCGGAAGCGAAGGACGCTTTGAGCCGGGCCG
CCGGCACTCTTAAGGACTCCCAGACCACCATCACCATTGAAGGGCACACCGACTCGACCGGCAGCAACGCCGTCAACCAG
CCGTTAAGCGAAAGGCGCGCCAACCGTGTCCGCGACTACCTGGTTTCCCAAGGCGTCCCGGGTGCCAAGATGGCAGCCAT
AGGGTACGGCTCCAGCCGTCCGGCCGTTCCCAACGATTCCGACGCCAACCGGGCCCTGAACCGCCGGGTGCAGATCGAGC
TGACCCCGAACGAGAAGCTCAAGGCGCAGGAAAGCGGCAACAACTAG

Upstream 100 bases:

>100_bases
TAGAGTTAGCTGCGGCATTCTATGTCAGGGTTGATCTTGGGCTTGGCAGTGATATGTTTTTCCAGTCCGAGCCCACATTA
CACTACACAAGGAGAGAACA

Downstream 100 bases:

>100_bases
TCCCCGAAAAAAAGCGGGACACCCTACAGGGTGTCCCGCTTTTCGCTCCCCTTTTTCACGAAGGTCCCCTTCTCCAACTC
CTCGAAAGCAAGCTGCAGTT

Product: OmpA family outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MRARWIVKLIVGMSAVALLATGCATNPDGSYEFKRTGIGALGGAALGAGAGALLGGKSHRGRNAAIGGLTGAVVGGAVGQ
YMDRQAVALKKSMPEAEVVRDGDKVYVALPSGILFDLGKDALKPEAKDALSRAAGTLKDSQTTITIEGHTDSTGSNAVNQ
PLSERRANRVRDYLVSQGVPGAKMAAIGYGSSRPAVPNDSDANRALNRRVQIELTPNEKLKAQESGNN

Sequences:

>Translated_228_residues
MRARWIVKLIVGMSAVALLATGCATNPDGSYEFKRTGIGALGGAALGAGAGALLGGKSHRGRNAAIGGLTGAVVGGAVGQ
YMDRQAVALKKSMPEAEVVRDGDKVYVALPSGILFDLGKDALKPEAKDALSRAAGTLKDSQTTITIEGHTDSTGSNAVNQ
PLSERRANRVRDYLVSQGVPGAKMAAIGYGSSRPAVPNDSDANRALNRRVQIELTPNEKLKAQESGNN
>Mature_228_residues
MRARWIVKLIVGMSAVALLATGCATNPDGSYEFKRTGIGALGGAALGAGAGALLGGKSHRGRNAAIGGLTGAVVGGAVGQ
YMDRQAVALKKSMPEAEVVRDGDKVYVALPSGILFDLGKDALKPEAKDALSRAAGTLKDSQTTITIEGHTDSTGSNAVNQ
PLSERRANRVRDYLVSQGVPGAKMAAIGYGSSRPAVPNDSDANRALNRRVQIELTPNEKLKAQESGNN

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=214, Percent_Identity=38.785046728972, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1787191, Length=121, Percent_Identity=38.8429752066116, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=34.6938775510204, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23525; Mature: 23525

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRARWIVKLIVGMSAVALLATGCATNPDGSYEFKRTGIGALGGAALGAGAGALLGGKSHR
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHCCCCHHCCHHHCCCCHHHCCCCCCC
GRNAAIGGLTGAVVGGAVGQYMDRQAVALKKSMPEAEVVRDGDKVYVALPSGILFDLGKD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCHHHHCCHH
ALKPEAKDALSRAAGTLKDSQTTITIEGHTDSTGSNAVNQPLSERRANRVRDYLVSQGVP
HCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCC
GAKMAAIGYGSSRPAVPNDSDANRALNRRVQIELTPNEKLKAQESGNN
CCEEEEEECCCCCCCCCCCCCHHHHHCCEEEEEECCCCCEECCCCCCC
>Mature Secondary Structure
MRARWIVKLIVGMSAVALLATGCATNPDGSYEFKRTGIGALGGAALGAGAGALLGGKSHR
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHCCCCHHCCHHHCCCCHHHCCCCCCC
GRNAAIGGLTGAVVGGAVGQYMDRQAVALKKSMPEAEVVRDGDKVYVALPSGILFDLGKD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCHHHHCCHH
ALKPEAKDALSRAAGTLKDSQTTITIEGHTDSTGSNAVNQPLSERRANRVRDYLVSQGVP
HCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCC
GAKMAAIGYGSSRPAVPNDSDANRALNRRVQIELTPNEKLKAQESGNN
CCEEEEEECCCCCCCCCCCCCHHHHHCCEEEEEECCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]