| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is agaY [C]
Identifier: 197117397
GI number: 197117397
Start: 1165002
End: 1166285
Strand: Direct
Name: agaY [C]
Synonym: Gbem_1007
Alternate gene names: 197117397
Gene position: 1165002-1166285 (Clockwise)
Preceding gene: 197117396
Following gene: 197117398
Centisome position: 25.24
GC content: 61.53
Gene sequence:
>1284_bases ATGCCCGTAACGTCTTCAGATTTCGTCAAAGCCCTCGAAGTAGGCCGTCCCCCCAACGTCGCGAAGCTTTTCCCCAATTC CAAGGCTTTGCTGGTCAGCGGCAAGGTGATCGATCGCGCCATGAACGCCAAGGGGCACGCGCTCGCACTGGCAGCCAACG GCAGGAATCACTTCGTCATCCGCGGCGTACTGGCTGCGGCACAAAGGGCCAACGCCGCCGTCCTCATCGAGATTGCCAAG TCCGAGGGGGGCCAGAAAGCGTATTGCCCCGTGAACTACTGGAACATGGCCCGCCAGGTCGACGCCGTCGCCAACGAACT CGGCATCACCATTCCGGTCGCCATCCATGCCGACCACTACGGCATCAAGGGTGAGGGGGACATCAAGTCGGCGAAGGTCG AGATCCCCAGCATGTTCGACGCCGGCATCACCTCCATCGCCATCGACGCCTCCCACCTCCCCGACGAAGAGAACCTCCTG GCGAACCTGGAGCTGAACCAGTTCATCCCGGCCTGGGCCGGCCTTGAGACCGAGGTAGGCGAGATCAAGGGTAAAGAGGG GCTTTCCACCGTGCCCGAAGCGCTTTTCCTGATCAAGGGACTGAACGCCCACGGCGTCTTCCCGGACTGGATCGCCCTCA ATAACGGCACCACCCACGGGATCGAGGCGTCCGACGCCGGCATCCAGGTGGAACTGACCGCCGAAATCCACGAGGCCATC AAGCAGTACGGCGTGAACGGCGCCCAGCACGGCACCTCCGGCAACAGCTACGACAGGCTGCGCCAGATCGCCCAGAAGAC CCGCACCACCAAGGCCAACGTCGCCACGGCGCTGCAGTTCATCTCCTGGGGGCTCGAGGTCAACGACTACGGCAACGCCA AGCTCGACGCGAACGGCAACTTCATCAAGGTGAAGGGCGAGGGGATGACCGAGGAGCTTTGGACCGAAATGGTCGCCTTC GCCGATTCCAAGGGGTGGAAGAAGGGGGATTACAAAAACCTCAACCTCCCGTTCGAAAACAAGCTCCTGGCACAGCCCAA GGAGGCGCGTGACAGGATGGCCAAGCGGGTCGAGGATTTTGCCTACAAGCTCATCACCGAGGTATTCAACTCCGGCGATA CCGCGCCGCTTGCCGTCGATGCCATTTTGAAAGCCGGCTCTTACGACCTAGGCCCCAAGGGTAAGCGCGTCGAGGATCCG GCACAGTGGACCAAGGAAATGCTCCCGAAGCAGGCTGCCGGGCTTTCCAGGGATAAAGGACCTGCAGGCAACTTCGAAGA CTAA
Upstream 100 bases:
>100_bases GCGCGATTCCCGATCTGTCCTTGCCTTTGCATGATTAAGATGTTATAAGGAAGCGGTTTTTGTGATGAATTGACTACAAT CCCAGTGAGAAGGAGGAGAT
Downstream 100 bases:
>100_bases AAAGCCGTAGTTGCAGCGAAGCGGAACACGAGGGGGGCGCCGCGCCCCCCTTTTTTGACTGGGTGTCCGAAAGGGGATCA CGATGAAAGACAGACGCAAT
Product: ketose-bisphosphate aldolase family protein
Products: Glycerone-Phosphate; D-Glyceraldehyde 3-Phosphate. [C]
Alternate protein names: Ketose-Bisphosphate Aldolase Family Protein; Fructose-Bisphosphate Aldolase; Fructose-Bisphosphate Aldolase Class-II; Fructose/Tagatose Bisphosphate Aldolase-Like Protein; Ketose-Bisphosphate Aldolase Class-II Family Protein
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MPVTSSDFVKALEVGRPPNVAKLFPNSKALLVSGKVIDRAMNAKGHALALAANGRNHFVIRGVLAAAQRANAAVLIEIAK SEGGQKAYCPVNYWNMARQVDAVANELGITIPVAIHADHYGIKGEGDIKSAKVEIPSMFDAGITSIAIDASHLPDEENLL ANLELNQFIPAWAGLETEVGEIKGKEGLSTVPEALFLIKGLNAHGVFPDWIALNNGTTHGIEASDAGIQVELTAEIHEAI KQYGVNGAQHGTSGNSYDRLRQIAQKTRTTKANVATALQFISWGLEVNDYGNAKLDANGNFIKVKGEGMTEELWTEMVAF ADSKGWKKGDYKNLNLPFENKLLAQPKEARDRMAKRVEDFAYKLITEVFNSGDTAPLAVDAILKAGSYDLGPKGKRVEDP AQWTKEMLPKQAAGLSRDKGPAGNFED
Sequences:
>Translated_427_residues MPVTSSDFVKALEVGRPPNVAKLFPNSKALLVSGKVIDRAMNAKGHALALAANGRNHFVIRGVLAAAQRANAAVLIEIAK SEGGQKAYCPVNYWNMARQVDAVANELGITIPVAIHADHYGIKGEGDIKSAKVEIPSMFDAGITSIAIDASHLPDEENLL ANLELNQFIPAWAGLETEVGEIKGKEGLSTVPEALFLIKGLNAHGVFPDWIALNNGTTHGIEASDAGIQVELTAEIHEAI KQYGVNGAQHGTSGNSYDRLRQIAQKTRTTKANVATALQFISWGLEVNDYGNAKLDANGNFIKVKGEGMTEELWTEMVAF ADSKGWKKGDYKNLNLPFENKLLAQPKEARDRMAKRVEDFAYKLITEVFNSGDTAPLAVDAILKAGSYDLGPKGKRVEDP AQWTKEMLPKQAAGLSRDKGPAGNFED >Mature_426_residues PVTSSDFVKALEVGRPPNVAKLFPNSKALLVSGKVIDRAMNAKGHALALAANGRNHFVIRGVLAAAQRANAAVLIEIAKS EGGQKAYCPVNYWNMARQVDAVANELGITIPVAIHADHYGIKGEGDIKSAKVEIPSMFDAGITSIAIDASHLPDEENLLA NLELNQFIPAWAGLETEVGEIKGKEGLSTVPEALFLIKGLNAHGVFPDWIALNNGTTHGIEASDAGIQVELTAEIHEAIK QYGVNGAQHGTSGNSYDRLRQIAQKTRTTKANVATALQFISWGLEVNDYGNAKLDANGNFIKVKGEGMTEELWTEMVAFA DSKGWKKGDYKNLNLPFENKLLAQPKEARDRMAKRVEDFAYKLITEVFNSGDTAPLAVDAILKAGSYDLGPKGKRVEDPA QWTKEMLPKQAAGLSRDKGPAGNFED
Specific function: Catalyzes The Reversible Condensation Of Dihydroxyacetone Phosphate With Glyceraldehyde 3-Phosphate To Produce Tagatose 1,6-Bisphosphate. [C]
COG id: COG0191
COG function: function code G; Fructose/tagatose bisphosphate aldolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 4.1.2.- [C]
Molecular weight: Translated: 46026; Mature: 45894
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVTSSDFVKALEVGRPPNVAKLFPNSKALLVSGKVIDRAMNAKGHALALAANGRNHFVI CCCCHHHHHHHHHCCCCCCHHEECCCCCEEEEECHHHHHHHCCCCCEEEEEECCCCEEEE RGVLAAAQRANAAVLIEIAKSEGGQKAYCPVNYWNMARQVDAVANELGITIPVAIHADHY HHHHHHHHCCCCEEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC GIKGEGDIKSAKVEIPSMFDAGITSIAIDASHLPDEENLLANLELNQFIPAWAGLETEVG CCCCCCCCCEEEEECCCHHHCCCCEEEEEHHHCCCHHHEEEECCHHHHCCHHCCCCCHHH EIKGKEGLSTVPEALFLIKGLNAHGVFPDWIALNNGTTHGIEASDAGIQVELTAEIHEAI HCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEHHHHHHHH KQYGVNGAQHGTSGNSYDRLRQIAQKTRTTKANVATALQFISWGLEVNDYGNAKLDANGN HHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCEEEECCCC FIKVKGEGMTEELWTEMVAFADSKGWKKGDYKNLNLPFENKLLAQPKEARDRMAKRVEDF EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHH AYKLITEVFNSGDTAPLAVDAILKAGSYDLGPKGKRVEDPAQWTKEMLPKQAAGLSRDKG HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC PAGNFED CCCCCCC >Mature Secondary Structure PVTSSDFVKALEVGRPPNVAKLFPNSKALLVSGKVIDRAMNAKGHALALAANGRNHFVI CCCHHHHHHHHHCCCCCCHHEECCCCCEEEEECHHHHHHHCCCCCEEEEEECCCCEEEE RGVLAAAQRANAAVLIEIAKSEGGQKAYCPVNYWNMARQVDAVANELGITIPVAIHADHY HHHHHHHHCCCCEEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC GIKGEGDIKSAKVEIPSMFDAGITSIAIDASHLPDEENLLANLELNQFIPAWAGLETEVG CCCCCCCCCEEEEECCCHHHCCCCEEEEEHHHCCCHHHEEEECCHHHHCCHHCCCCCHHH EIKGKEGLSTVPEALFLIKGLNAHGVFPDWIALNNGTTHGIEASDAGIQVELTAEIHEAI HCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEHHHHHHHH KQYGVNGAQHGTSGNSYDRLRQIAQKTRTTKANVATALQFISWGLEVNDYGNAKLDANGN HHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCEEEECCCC FIKVKGEGMTEELWTEMVAFADSKGWKKGDYKNLNLPFENKLLAQPKEARDRMAKRVEDF EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHH AYKLITEVFNSGDTAPLAVDAILKAGSYDLGPKGKRVEDPAQWTKEMLPKQAAGLSRDKG HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC PAGNFED CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: D-Tagatose 1,6-Bisphosphate 1,6-Bisphosphate [C]
Specific reaction: D-Tagatose 1,6-Bisphosphate 1,6-Bisphosphate = Glycerone-Phosphate + D-Glyceraldehyde 3-Phosphate. [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA