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The map label for this gene is secY [H]

Identifier: 197117343

GI number: 197117343

Start: 1106743

End: 1108050

Strand: Direct

Name: secY [H]

Synonym: Gbem_0953

Alternate gene names: 197117343

Gene position: 1106743-1108050 (Clockwise)

Preceding gene: 197117342

Following gene: 197117344

Centisome position: 23.98

GC content: 59.4

Gene sequence:

>1308_bases
TTGATAGAAGCCTTCCAGAACATTTTCAAGATCCCCGAGCTTAAAAAGAAGGTTCTCTTTTCGCTGGCCATGCTGGCCGT
CTACCGGATAGGGTGTCATATCCCTACCCCGGGCATCGACGCCCAGGCCCTCGCCCAGTTCTTCAAGGCTGCGCAGGGCA
CGCTGCTCGGTATGTTCGACATGTTTTCTGGCGGGGCTCTCGAGAAGCTCACCGTCTTCGCCCTCGGCATCATGCCGTAT
ATCTCCTCCTCCATCATCTTCCAACTCCTCACCGTTGTGCTTCCGGCCGTGGAGAAGCTTTCCAAGGAAGGTGACGCTGG
AAGGAAGAAGATCATCCAGTACACCCGCTACGGCACCATCGTGCTGGCGGTGGTTCAGGCGTTCGGCATCAGCATCGGCC
TTGAGGCCATGCGCGGTCCGGCCGGCGAGCTGGTAGTTCCGAACCCCGGCTGGGGCTTCAGGCTGATGACGGTGATCACC
CTCACGGCTGGCACCGCCTTCATCATGTGGCTCGGCGAGCAGATGTCTGAGAAGGGTATCGGCAACGGCATCTCCCTGAT
CATCTTCGCCGGCATCGTGGCCCGCATCCCGACCGCGATCGGCAACAGCTTCCGTCTGATCAAGACGGGCGAGCTCTCCC
TGTTCGTGCTGCTCCTGATCGCCGCGGTGATGTTCGCGGTGATCGCGGCGGTGGTATTCATGGAGCGCGGCCAGCGCAGG
ATTCCGATCCACTACGCCAAGAGGGTGGTGGGGCTCAAGACCGTAGGCGCGCAGAGCTCGCACCTGCCGCTCAAGGTGAA
CATGGCCGGCGTCATCCCGCCGATCTTCGCCTCGTCGATCATCATGTTCCCGGCCACGGTGGGCAACTTCATCGACGTCC
CCTGGGTGCAGGCGGCCTCCAAGCAGTTGGCCCCCGGAAAGTTGCTTTACGAGGTTTTATTTGTTGCCTTTATCGTCTTT
TTCTGTTACTTCTACACGGCTGTGACTTTCAACCCGGTTGATGTCGCCGATAACGTCAAGAAACAGGGGGGGTATGTGCC
CGGGATCCGTCCCGGTAAGGAGACCTCCGACTTCCTCGACGCGGTGCTGACCAAGTTGACCTTCGCCGGCGCCATTTACA
TCTCCGCGGTCTGCGTGCTTCCTTCGATTCTGATTGGGAAATTCAACCTCCCCTTCTATTTTGGCGGCACTTCCCTGCTG
ATCGCCGTCGGTGTCGGCATGGACACTCTGTCGCAGATAGAGGCGCACCTGATTACCCGAAGCTACGAAGGGTTCATGAA
GGGCGTGCGCATCCAGGGCAGAAGGTAA

Upstream 100 bases:

>100_bases
GTGACATCACCCGTGCACTGACCATCAAGGCCCACAAATTCAGCGCCTCTGCTCGCGAAAAAATAACTGCGGCAGGTGGT
TCCATCGAGGAGATCTAGTC

Downstream 100 bases:

>100_bases
GGGGTTATCATGAATCTCATCCTCCTCGGACCCCCGGGCGTCGGCAAGGGGACCCAGGCAAAACTTCTCATAGATAGATT
TGGTATCCCGCAGATATCGA

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MIEAFQNIFKIPELKKKVLFSLAMLAVYRIGCHIPTPGIDAQALAQFFKAAQGTLLGMFDMFSGGALEKLTVFALGIMPY
ISSSIIFQLLTVVLPAVEKLSKEGDAGRKKIIQYTRYGTIVLAVVQAFGISIGLEAMRGPAGELVVPNPGWGFRLMTVIT
LTAGTAFIMWLGEQMSEKGIGNGISLIIFAGIVARIPTAIGNSFRLIKTGELSLFVLLLIAAVMFAVIAAVVFMERGQRR
IPIHYAKRVVGLKTVGAQSSHLPLKVNMAGVIPPIFASSIIMFPATVGNFIDVPWVQAASKQLAPGKLLYEVLFVAFIVF
FCYFYTAVTFNPVDVADNVKKQGGYVPGIRPGKETSDFLDAVLTKLTFAGAIYISAVCVLPSILIGKFNLPFYFGGTSLL
IAVGVGMDTLSQIEAHLITRSYEGFMKGVRIQGRR

Sequences:

>Translated_435_residues
MIEAFQNIFKIPELKKKVLFSLAMLAVYRIGCHIPTPGIDAQALAQFFKAAQGTLLGMFDMFSGGALEKLTVFALGIMPY
ISSSIIFQLLTVVLPAVEKLSKEGDAGRKKIIQYTRYGTIVLAVVQAFGISIGLEAMRGPAGELVVPNPGWGFRLMTVIT
LTAGTAFIMWLGEQMSEKGIGNGISLIIFAGIVARIPTAIGNSFRLIKTGELSLFVLLLIAAVMFAVIAAVVFMERGQRR
IPIHYAKRVVGLKTVGAQSSHLPLKVNMAGVIPPIFASSIIMFPATVGNFIDVPWVQAASKQLAPGKLLYEVLFVAFIVF
FCYFYTAVTFNPVDVADNVKKQGGYVPGIRPGKETSDFLDAVLTKLTFAGAIYISAVCVLPSILIGKFNLPFYFGGTSLL
IAVGVGMDTLSQIEAHLITRSYEGFMKGVRIQGRR
>Mature_435_residues
MIEAFQNIFKIPELKKKVLFSLAMLAVYRIGCHIPTPGIDAQALAQFFKAAQGTLLGMFDMFSGGALEKLTVFALGIMPY
ISSSIIFQLLTVVLPAVEKLSKEGDAGRKKIIQYTRYGTIVLAVVQAFGISIGLEAMRGPAGELVVPNPGWGFRLMTVIT
LTAGTAFIMWLGEQMSEKGIGNGISLIIFAGIVARIPTAIGNSFRLIKTGELSLFVLLLIAAVMFAVIAAVVFMERGQRR
IPIHYAKRVVGLKTVGAQSSHLPLKVNMAGVIPPIFASSIIMFPATVGNFIDVPWVQAASKQLAPGKLLYEVLFVAFIVF
FCYFYTAVTFNPVDVADNVKKQGGYVPGIRPGKETSDFLDAVLTKLTFAGAIYISAVCVLPSILIGKFNLPFYFGGTSLL
IAVGVGMDTLSQIEAHLITRSYEGFMKGVRIQGRR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=425, Percent_Identity=53.1764705882353, Blast_Score=414, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47052; Mature: 47052

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEAFQNIFKIPELKKKVLFSLAMLAVYRIGCHIPTPGIDAQALAQFFKAAQGTLLGMFD
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH
MFSGGALEKLTVFALGIMPYISSSIIFQLLTVVLPAVEKLSKEGDAGRKKIIQYTRYGTI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VLAVVQAFGISIGLEAMRGPAGELVVPNPGWGFRLMTVITLTAGTAFIMWLGEQMSEKGI
HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GNGISLIIFAGIVARIPTAIGNSFRLIKTGELSLFVLLLIAAVMFAVIAAVVFMERGQRR
CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IPIHYAKRVVGLKTVGAQSSHLPLKVNMAGVIPPIFASSIIMFPATVGNFIDVPWVQAAS
CCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH
KQLAPGKLLYEVLFVAFIVFFCYFYTAVTFNPVDVADNVKKQGGYVPGIRPGKETSDFLD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHH
AVLTKLTFAGAIYISAVCVLPSILIGKFNLPFYFGGTSLLIAVGVGMDTLSQIEAHLITR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHEEHEECCCHHHHHHHHHHHHHH
SYEGFMKGVRIQGRR
HHHHHHCCCCCCCCC
>Mature Secondary Structure
MIEAFQNIFKIPELKKKVLFSLAMLAVYRIGCHIPTPGIDAQALAQFFKAAQGTLLGMFD
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH
MFSGGALEKLTVFALGIMPYISSSIIFQLLTVVLPAVEKLSKEGDAGRKKIIQYTRYGTI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VLAVVQAFGISIGLEAMRGPAGELVVPNPGWGFRLMTVITLTAGTAFIMWLGEQMSEKGI
HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GNGISLIIFAGIVARIPTAIGNSFRLIKTGELSLFVLLLIAAVMFAVIAAVVFMERGQRR
CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IPIHYAKRVVGLKTVGAQSSHLPLKVNMAGVIPPIFASSIIMFPATVGNFIDVPWVQAAS
CCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH
KQLAPGKLLYEVLFVAFIVFFCYFYTAVTFNPVDVADNVKKQGGYVPGIRPGKETSDFLD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHH
AVLTKLTFAGAIYISAVCVLPSILIGKFNLPFYFGGTSLLIAVGVGMDTLSQIEAHLITR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHEEHEECCCHHHHHHHHHHHHHH
SYEGFMKGVRIQGRR
HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]