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The map label for this gene is ygiQ [C]

Identifier: 197117305

GI number: 197117305

Start: 1076567

End: 1078366

Strand: Direct

Name: ygiQ [C]

Synonym: Gbem_0915

Alternate gene names: 197117305

Gene position: 1076567-1078366 (Clockwise)

Preceding gene: 197117304

Following gene: 197117306

Centisome position: 23.33

GC content: 63.89

Gene sequence:

>1800_bases
ATGAAACACGCACGACCTAAGCAATCTCCCGGCAAGTTTCTCCCCATCTCCCTCTCCGAAGCAAAAGCGCGCGGCTGGAA
CGAACTCGACGTCATCTTCGTGACCGGCGACGCCTACGTGGACCATCCCTCGTTCGGGGTGCCGCTTTTAGCGCGCCTCT
TAGAGTCGAAGGGGTTACGCGTGGGCATCATCCCCCAGCCGGACTGGCGCAGCAAGGAGCCTTTCATGGCCTTGGGGCGC
CCGCGCCTTTTCTTCGCGCTCGCGGCCGGCGCCATGGACTCCATGGTCGCCCATTACACGCCGGCCCGAAAGCTGCGCCG
GGATGACGCCTACACCCCCGGCAACCGCCACGGCGCCCGCCCCAACCGCGCCATCATCGTCTACACCTCCAGGCTCAAGG
AAGCCTATCGCGACGTCCCCGTGGTCATCGGCGGCATCGAGGCGAGTCTCAGGCGCTTTGCCCATTACGACTTCTGGGAG
GACAAGGTGCGCCGCTCGGCGCTCTTGGACGCGAAGGCGGACCTGCTCGTCTACGGCATGGGGGAGACGCCGCTATTGGA
ACTGGTGCGGCGGCTTCAGAAGGGGGAGCCGTTCGCCTCCATAAGGGACATCAGGGGGACAGCCTATGTCGCAGCCACCC
CTCCGGATGCAGAGGAATTGCTGGAGCTTCCCAGCTTTGAGACGGTCGCTTCCGATAATGCTGCCTACGGCCAATCTTTC
CGGCTTCTGTCGGGGGAGCAGAGCCCTGCCTGCGCCAGGGTCGTGGTGCAGCGCCACGCGGAGCGTTTTCTGGTCTGCAA
TCCGCCGGCCTGGCCCCTCTCCGAGCAGGCACTGGACGCGATCTACGCGCTCCCCTTCGTGAAGGCGCCGCACCCGAAAT
ACAAGGAGGCGATCCCCGCCTACGAGCAGATCAGGAACTCCATCACCACGCACCGGGGGTGCTTCGGCGGCTGCGCCTTC
TGCGCCATCACCCATCACCAGGGAAAGACCATCCAGTCGAGAAGCGAGGAAAGTGTCCTGCGCGAACTGGAGCGGCTGGC
GGCGCTCCCCTGGTTCAGGGGGAGCGTGAGCGATTTGGGCGGACCGACGGCCAACATGTTCGGACTTTCCTGCGGCAACA
AGGAGGCGGGGGGCAAGTGCCGCCGGGAGAGCTGCCTTTATCCCAAACTTTGCGGCAACCTGGTCACCGCCGACGCCAGG
AGCTCCAGGCTTCTCGCCAAGGCCCGGAAGATCTCCGGGGTGAAAAATGTTGCCGTCTCTTCCGGCGTGCGCTACGACCT
GTTGGAGCGCCAGCCCAACTACCTGCGCGAGCTGGTGTCGCATCACGTGAGCGGCCTTTTGAAGGTGGCGCCAGAGCACC
TGACCGACCGTGTCACCTCCGCGATGCGCAAGCCGGGAAAAGCCTGCTTCGAGCGCTTCCGCGACTCCTTCATGAAGGAG
AGCGCGAGAGTCGGGAAAAGGCAGTACATCATCCCGTACTTCATCTCCGGGCATCCCGGGTGCACCCTTTCCGACATGGT
GGATTTGGCCCTGATGCTTAAGCGCTGGGGGATGAAGGTAGAGCAGGTGCAGGATTTCACCCCGACACCGGGCACCCTCT
CCACCTGCATCTACCACACGGGCGTCGATCCCTATACCGGGGAGAAGATGTACGTGGCGAAGACCGACCGTGAGAAGGGG
CTGCAGAAATCGCTGCTGCTCTACCATGTGCCGGAGGAGAGGAAGAGCTGCCTGCAGGCGCTCAGGGAATGCGGCAGGGA
AGACGCGGCGGAAGAACTCTTCGGGCCGGGAAGGAGATAG

Upstream 100 bases:

>100_bases
GAGGATCTGAGAAAAGCAAAGACGGAGAGAAACAAAGCTCCAGCTTCGGTTATTCTCAGACGTCCTCAGATGTTCTCCGT
GTTAAAGGTTCAAGGTTTTT

Downstream 100 bases:

>100_bases
GGATGCACTACTTGTTGTTCTACGAGGTGGCGCCCGATTACCTGGAGCGCCGCGGCGAGTATCGCGCCGAGCATCTGGCG
CTTGCGTGGGGCGCGGTGGA

Product: cobalamin-binding radical SAM domain-containing iron-sulfur cluster-binding oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 599; Mature: 599

Protein sequence:

>599_residues
MKHARPKQSPGKFLPISLSEAKARGWNELDVIFVTGDAYVDHPSFGVPLLARLLESKGLRVGIIPQPDWRSKEPFMALGR
PRLFFALAAGAMDSMVAHYTPARKLRRDDAYTPGNRHGARPNRAIIVYTSRLKEAYRDVPVVIGGIEASLRRFAHYDFWE
DKVRRSALLDAKADLLVYGMGETPLLELVRRLQKGEPFASIRDIRGTAYVAATPPDAEELLELPSFETVASDNAAYGQSF
RLLSGEQSPACARVVVQRHAERFLVCNPPAWPLSEQALDAIYALPFVKAPHPKYKEAIPAYEQIRNSITTHRGCFGGCAF
CAITHHQGKTIQSRSEESVLRELERLAALPWFRGSVSDLGGPTANMFGLSCGNKEAGGKCRRESCLYPKLCGNLVTADAR
SSRLLAKARKISGVKNVAVSSGVRYDLLERQPNYLRELVSHHVSGLLKVAPEHLTDRVTSAMRKPGKACFERFRDSFMKE
SARVGKRQYIIPYFISGHPGCTLSDMVDLALMLKRWGMKVEQVQDFTPTPGTLSTCIYHTGVDPYTGEKMYVAKTDREKG
LQKSLLLYHVPEERKSCLQALRECGREDAAEELFGPGRR

Sequences:

>Translated_599_residues
MKHARPKQSPGKFLPISLSEAKARGWNELDVIFVTGDAYVDHPSFGVPLLARLLESKGLRVGIIPQPDWRSKEPFMALGR
PRLFFALAAGAMDSMVAHYTPARKLRRDDAYTPGNRHGARPNRAIIVYTSRLKEAYRDVPVVIGGIEASLRRFAHYDFWE
DKVRRSALLDAKADLLVYGMGETPLLELVRRLQKGEPFASIRDIRGTAYVAATPPDAEELLELPSFETVASDNAAYGQSF
RLLSGEQSPACARVVVQRHAERFLVCNPPAWPLSEQALDAIYALPFVKAPHPKYKEAIPAYEQIRNSITTHRGCFGGCAF
CAITHHQGKTIQSRSEESVLRELERLAALPWFRGSVSDLGGPTANMFGLSCGNKEAGGKCRRESCLYPKLCGNLVTADAR
SSRLLAKARKISGVKNVAVSSGVRYDLLERQPNYLRELVSHHVSGLLKVAPEHLTDRVTSAMRKPGKACFERFRDSFMKE
SARVGKRQYIIPYFISGHPGCTLSDMVDLALMLKRWGMKVEQVQDFTPTPGTLSTCIYHTGVDPYTGEKMYVAKTDREKG
LQKSLLLYHVPEERKSCLQALRECGREDAAEELFGPGRR
>Mature_599_residues
MKHARPKQSPGKFLPISLSEAKARGWNELDVIFVTGDAYVDHPSFGVPLLARLLESKGLRVGIIPQPDWRSKEPFMALGR
PRLFFALAAGAMDSMVAHYTPARKLRRDDAYTPGNRHGARPNRAIIVYTSRLKEAYRDVPVVIGGIEASLRRFAHYDFWE
DKVRRSALLDAKADLLVYGMGETPLLELVRRLQKGEPFASIRDIRGTAYVAATPPDAEELLELPSFETVASDNAAYGQSF
RLLSGEQSPACARVVVQRHAERFLVCNPPAWPLSEQALDAIYALPFVKAPHPKYKEAIPAYEQIRNSITTHRGCFGGCAF
CAITHHQGKTIQSRSEESVLRELERLAALPWFRGSVSDLGGPTANMFGLSCGNKEAGGKCRRESCLYPKLCGNLVTADAR
SSRLLAKARKISGVKNVAVSSGVRYDLLERQPNYLRELVSHHVSGLLKVAPEHLTDRVTSAMRKPGKACFERFRDSFMKE
SARVGKRQYIIPYFISGHPGCTLSDMVDLALMLKRWGMKVEQVQDFTPTPGTLSTCIYHTGVDPYTGEKMYVAKTDREKG
LQKSLLLYHVPEERKSCLQALRECGREDAAEELFGPGRR

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0313 family [H]

Homologues:

Organism=Escherichia coli, GI48994917, Length=640, Percent_Identity=46.71875, Blast_Score=603, Evalue=1e-173,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR020612
- InterPro:   IPR007197
- InterPro:   IPR013704
- InterPro:   IPR022946 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08497 Radical_SAM_N [H]

EC number: NA

Molecular weight: Translated: 66777; Mature: 66777

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHARPKQSPGKFLPISLSEAKARGWNELDVIFVTGDAYVDHPSFGVPLLARLLESKGLR
CCCCCCCCCCCCEEEEEHHHHHCCCCCCEEEEEEECCCEECCCCCCHHHHHHHHHHCCCE
VGIIPQPDWRSKEPFMALGRPRLFFALAAGAMDSMVAHYTPARKLRRDDAYTPGNRHGAR
EEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC
PNRAIIVYTSRLKEAYRDVPVVIGGIEASLRRFAHYDFWEDKVRRSALLDAKADLLVYGM
CCCEEEEEHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEC
GETPLLELVRRLQKGEPFASIRDIRGTAYVAATPPDAEELLELPSFETVASDNAAYGQSF
CCCHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCHHHHHHCCCCHHHCCCCCCCCCCE
RLLSGEQSPACARVVVQRHAERFLVCNPPAWPLSEQALDAIYALPFVKAPHPKYKEAIPA
EEECCCCCHHHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCH
YEQIRNSITTHRGCFGGCAFCAITHHQGKTIQSRSEESVLRELERLAALPWFRGSVSDLG
HHHHHHHHHHCCCCCCCHHEEEEECCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCHHHCC
GPTANMFGLSCGNKEAGGKCRRESCLYPKLCGNLVTADARSSRLLAKARKISGVKNVAVS
CCCCHHEECCCCCCCCCCCHHHHCCCCHHHHCCCEECCCHHHHHHHHHHHHCCHHHHHHH
SGVRYDLLERQPNYLRELVSHHVSGLLKVAPEHLTDRVTSAMRKPGKACFERFRDSFMKE
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SARVGKRQYIIPYFISGHPGCTLSDMVDLALMLKRWGMKVEQVQDFTPTPGTLSTCIYHT
HHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHEEC
GVDPYTGEKMYVAKTDREKGLQKSLLLYHVPEERKSCLQALRECGREDAAEELFGPGRR
CCCCCCCCEEEEEECCHHHCHHHHHHEEECCHHHHHHHHHHHHHCHHHHHHHHCCCCCC
>Mature Secondary Structure
MKHARPKQSPGKFLPISLSEAKARGWNELDVIFVTGDAYVDHPSFGVPLLARLLESKGLR
CCCCCCCCCCCCEEEEEHHHHHCCCCCCEEEEEEECCCEECCCCCCHHHHHHHHHHCCCE
VGIIPQPDWRSKEPFMALGRPRLFFALAAGAMDSMVAHYTPARKLRRDDAYTPGNRHGAR
EEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC
PNRAIIVYTSRLKEAYRDVPVVIGGIEASLRRFAHYDFWEDKVRRSALLDAKADLLVYGM
CCCEEEEEHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEC
GETPLLELVRRLQKGEPFASIRDIRGTAYVAATPPDAEELLELPSFETVASDNAAYGQSF
CCCHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCHHHHHHCCCCHHHCCCCCCCCCCE
RLLSGEQSPACARVVVQRHAERFLVCNPPAWPLSEQALDAIYALPFVKAPHPKYKEAIPA
EEECCCCCHHHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCH
YEQIRNSITTHRGCFGGCAFCAITHHQGKTIQSRSEESVLRELERLAALPWFRGSVSDLG
HHHHHHHHHHCCCCCCCHHEEEEECCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCHHHCC
GPTANMFGLSCGNKEAGGKCRRESCLYPKLCGNLVTADARSSRLLAKARKISGVKNVAVS
CCCCHHEECCCCCCCCCCCHHHHCCCCHHHHCCCEECCCHHHHHHHHHHHHCCHHHHHHH
SGVRYDLLERQPNYLRELVSHHVSGLLKVAPEHLTDRVTSAMRKPGKACFERFRDSFMKE
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SARVGKRQYIIPYFISGHPGCTLSDMVDLALMLKRWGMKVEQVQDFTPTPGTLSTCIYHT
HHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHEEC
GVDPYTGEKMYVAKTDREKGLQKSLLLYHVPEERKSCLQALRECGREDAAEELFGPGRR
CCCCCCCCEEEEEECCHHHCHHHHHHEEECCHHHHHHHHHHHHHCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA