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The map label for this gene is lytE [H]

Identifier: 197117286

GI number: 197117286

Start: 1050389

End: 1051417

Strand: Direct

Name: lytE [H]

Synonym: Gbem_0896

Alternate gene names: 197117286

Gene position: 1050389-1051417 (Clockwise)

Preceding gene: 197117285

Following gene: 197117287

Centisome position: 22.76

GC content: 59.57

Gene sequence:

>1029_bases
ATGATAAAATGCGTCAAGCTAATAGCCTTATGCCTTCTCATGCTCTCCGTCCCTTCGCTCGCCTTCGCTGCCAAGACCCA
TCGCGTTAAAAAGCACGAAACCCTATATTCCCTCGCCAAAAAGTATCATGTCACCGTTGAAGAACTGAAGGCTGCGAACA
ACCTGGTCGGCAACAGCGTGAAGCCGCGCGTCGTCCTGGTTATCCCCGCCCGCTCCGTTTCCGAGGGAAGAAACGAGACG
GCGTCGAGCGACGCGACTTACAAGGTGAAGAAAAGCGAAAGCCTCTCCCGCATCTCGAAGAAGACCGGCGTGTCCGTGGC
GGAGCTGAAGCGCCTGAACGGACTCAGCAGCAGCCGGGTCAAGGCCGGGAAGGTGCTGGTTCTCAAGGAGAGCGCTCCCG
CCGACGAGCCGAAGGTCAAGGTGGTCAAAAAGCTGCAGCTGCGCCATGGCGACCTTTTCAACGAGAAAGATTACGAGCAG
AGCCTTCAGGAGTTGACCGCGCTCGAGCCTGAGCAGCAGGTGGATCTGGCCAAGAACGCCGAGCTCAAGGTGGACAACCT
CAAGGAACTGAAGAAATCCGCCTACGGCTTCCTCGGGACCCGCTACCGCTTCGGCGGGAGTTCCCGCTCCGGCATCGACT
GTTCCAGTTTCGTGCAGCACGTGTTCCGCGACCTCGAGGTCTCCCTGCCGCGCACCGCTCGCGAGCAGTTCGAGGTGGGG
AATGCAGTGGCGCCGGGCGACCTGCAGAAGGGGGACCTGATCTTCTTCGCCACCTACGCCTCCTATCCGTCCCACGTAGG
GATCTATCTGGGCAACAACAAGATGATCCATGCCTCCTCCCGCGACCGCAGGGTGGTCATCTCCTCGCTCAACACCTCCT
ACTACCGTTCCCGCTTTCTGGGGGCCAAAAGGATCGCCAAGGTGAATCCGGAAGTGTTCCAACTGGACGACCTGATCCTG
GGGGTCGAGGAGGAGAGCCCGGAGGAGATGCTGGAAAACGACTCGCTCGGGTTGACGAGCAGCAACTAG

Upstream 100 bases:

>100_bases
AATATTTCCTAGCAATACGATCATTAGGTTGACAGGGCGCAACTTTTGTTATACAAATTTAAGGCCTTGCGGTATTTTCT
AAAACAATGAAGGAGGATTC

Downstream 100 bases:

>100_bases
GCTAAACAGAACCACAGAACTTCCGAATCCGGCCCTCAGGGCCGGATTTTTTTATGGGTGCAGCTTGAAGATCCTCCTTG
CGTACAAATGCCATCCCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: Cell wall-associated polypeptide CWBP33; Gamma-D-glutamate-meso-diaminopimelate muropeptidase lytE; Phosphatase-associated protein papQ [H]

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MIKCVKLIALCLLMLSVPSLAFAAKTHRVKKHETLYSLAKKYHVTVEELKAANNLVGNSVKPRVVLVIPARSVSEGRNET
ASSDATYKVKKSESLSRISKKTGVSVAELKRLNGLSSSRVKAGKVLVLKESAPADEPKVKVVKKLQLRHGDLFNEKDYEQ
SLQELTALEPEQQVDLAKNAELKVDNLKELKKSAYGFLGTRYRFGGSSRSGIDCSSFVQHVFRDLEVSLPRTAREQFEVG
NAVAPGDLQKGDLIFFATYASYPSHVGIYLGNNKMIHASSRDRRVVISSLNTSYYRSRFLGAKRIAKVNPEVFQLDDLIL
GVEEESPEEMLENDSLGLTSSN

Sequences:

>Translated_342_residues
MIKCVKLIALCLLMLSVPSLAFAAKTHRVKKHETLYSLAKKYHVTVEELKAANNLVGNSVKPRVVLVIPARSVSEGRNET
ASSDATYKVKKSESLSRISKKTGVSVAELKRLNGLSSSRVKAGKVLVLKESAPADEPKVKVVKKLQLRHGDLFNEKDYEQ
SLQELTALEPEQQVDLAKNAELKVDNLKELKKSAYGFLGTRYRFGGSSRSGIDCSSFVQHVFRDLEVSLPRTAREQFEVG
NAVAPGDLQKGDLIFFATYASYPSHVGIYLGNNKMIHASSRDRRVVISSLNTSYYRSRFLGAKRIAKVNPEVFQLDDLIL
GVEEESPEEMLENDSLGLTSSN
>Mature_342_residues
MIKCVKLIALCLLMLSVPSLAFAAKTHRVKKHETLYSLAKKYHVTVEELKAANNLVGNSVKPRVVLVIPARSVSEGRNET
ASSDATYKVKKSESLSRISKKTGVSVAELKRLNGLSSSRVKAGKVLVLKESAPADEPKVKVVKKLQLRHGDLFNEKDYEQ
SLQELTALEPEQQVDLAKNAELKVDNLKELKKSAYGFLGTRYRFGGSSRSGIDCSSFVQHVFRDLEVSLPRTAREQFEVG
NAVAPGDLQKGDLIFFATYASYPSHVGIYLGNNKMIHASSRDRRVVISSLNTSYYRSRFLGAKRIAKVNPEVFQLDDLIL
GVEEESPEEMLENDSLGLTSSN

Specific function: Cleaves gamma-D-glutamate-meso-diaminopimelate bonds. Cell wall hydrolase involved in cell autolysis [H]

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Secreted, cell wall. Note=LysM repeats are thought to be involved in peptidoglycan binding [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 LysM repeats [H]

Homologues:

Organism=Escherichia coli, GI1788501, Length=143, Percent_Identity=40.5594405594406, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787944, Length=114, Percent_Identity=39.4736842105263, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788001, Length=111, Percent_Identity=42.3423423423423, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786421, Length=113, Percent_Identity=38.0530973451327, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 37876; Mature: 37876

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKCVKLIALCLLMLSVPSLAFAAKTHRVKKHETLYSLAKKYHVTVEELKAANNLVGNSV
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KPRVVLVIPARSVSEGRNETASSDATYKVKKSESLSRISKKTGVSVAELKRLNGLSSSRV
CCEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCHHHHHHHCCCCCCCC
KAGKVLVLKESAPADEPKVKVVKKLQLRHGDLFNEKDYEQSLQELTALEPEQQVDLAKNA
CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC
ELKVDNLKELKKSAYGFLGTRYRFGGSSRSGIDCSSFVQHVFRDLEVSLPRTAREQFEVG
CCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCC
NAVAPGDLQKGDLIFFATYASYPSHVGIYLGNNKMIHASSRDRRVVISSLNTSYYRSRFL
CCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCEEEECCCCCCEEEEECCCHHHHHHHHH
GAKRIAKVNPEVFQLDDLILGVEEESPEEMLENDSLGLTSSN
HHHHHHHCCCCCEEECHHEEECCCCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MIKCVKLIALCLLMLSVPSLAFAAKTHRVKKHETLYSLAKKYHVTVEELKAANNLVGNSV
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KPRVVLVIPARSVSEGRNETASSDATYKVKKSESLSRISKKTGVSVAELKRLNGLSSSRV
CCEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCHHHHHHHCCCCCCCC
KAGKVLVLKESAPADEPKVKVVKKLQLRHGDLFNEKDYEQSLQELTALEPEQQVDLAKNA
CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC
ELKVDNLKELKKSAYGFLGTRYRFGGSSRSGIDCSSFVQHVFRDLEVSLPRTAREQFEVG
CCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCC
NAVAPGDLQKGDLIFFATYASYPSHVGIYLGNNKMIHASSRDRRVVISSLNTSYYRSRFL
CCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCEEEECCCCCCEEEEECCCHHHHHHHHH
GAKRIAKVNPEVFQLDDLILGVEEESPEEMLENDSLGLTSSN
HHHHHHHCCCCCEEECHHEEECCCCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9457885; 9579061; 9384377; 8045898 [H]