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The map label for this gene is lipB [H]

Identifier: 197116732

GI number: 197116732

Start: 407647

End: 408402

Strand: Reverse

Name: lipB [H]

Synonym: Gbem_0332

Alternate gene names: 197116732

Gene position: 408402-407647 (Counterclockwise)

Preceding gene: 197116739

Following gene: 197116731

Centisome position: 8.85

GC content: 61.38

Gene sequence:

>756_bases
ATGAAGATTACCATCCTCGGCTCTGGCACCTCGACGGGTGTTCCCATGGTCGGCTGCCACTGCCAGGTCTGCGGTTCCAC
TGACCCGCGCGACAAAAGAACACGTGCCTCGATCCTGGTCGAGTCCTGCGGACAGCGCATCCTGGTAGACACCTCGACCG
ATCTCAGGGCGCAGGCGCTGCGTGAGGGTATTCCGCATGTCGATGCGGTTCTCTTCACCCATACCCACGCCGACCATATT
CACGGCATCGACGACCTCCGCGGTTTCTATTTCATCCACCGCCGGATCATCCCCTGCTACGGCAGCCCGGGAACGATGCA
GTCGGCGACCGACAAGTTCGCCTATATCTTCGACGGGCTCACCTCCGAAGGATATTCGCCGTTACTTGAGCCCTTCCCCG
TCGAAGACCCTTTCGAGCTATTCGGATGCCGGGTGGTGCCGGTGCCGATCAAGCACGGTTCCTTCGATGCCACCGGCTAC
CGGTTCGACAACGCTGCCTACCTGACCGACTGCAGCGAGATCCCGGAGGGGTCCCTGCCCCTCTTAGAGGGGCTCGAACT
TCTCATTATCGACGCCCTGCGTTTTTCCCCGCACCCGAATCATTTCAACATCGAGGGGGCGCTGCAGATGGCGCAAAAAC
TGCGGCCGCGCCGTACGCTCTTCACGCACTTAACCCACGAGGTGCGCCACAGCGACGGCAGCCGTCTCCCGGCAGGGGTC
GAATTCGCCTACGACGGCATGACGGTCGAACTTTGA

Upstream 100 bases:

>100_bases
GTGTGATAATAGCCGCAAAACCCGCGCAAGGCAAGGGATAAACCCCTTGCTTCACTGGCTCATTCCATGTTACCTTACCC
AGCATTCCGAGGGGCGACAC

Downstream 100 bases:

>100_bases
AGAGATAGAAGTTATCCAGAAACGGACGGAACCGATGTTTAAAGACATTCGACTGCACGGCTATGCAAACGACCAGATCG
AGTTTTACGCCATCACGGCA

Product: beta-lactamase superfamily metal-dependent hydrolase

Products: NA

Alternate protein names: Lipoate-protein ligase B; Lipoyl/octanoyl transferase; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKITILGSGTSTGVPMVGCHCQVCGSTDPRDKRTRASILVESCGQRILVDTSTDLRAQALREGIPHVDAVLFTHTHADHI
HGIDDLRGFYFIHRRIIPCYGSPGTMQSATDKFAYIFDGLTSEGYSPLLEPFPVEDPFELFGCRVVPVPIKHGSFDATGY
RFDNAAYLTDCSEIPEGSLPLLEGLELLIIDALRFSPHPNHFNIEGALQMAQKLRPRRTLFTHLTHEVRHSDGSRLPAGV
EFAYDGMTVEL

Sequences:

>Translated_251_residues
MKITILGSGTSTGVPMVGCHCQVCGSTDPRDKRTRASILVESCGQRILVDTSTDLRAQALREGIPHVDAVLFTHTHADHI
HGIDDLRGFYFIHRRIIPCYGSPGTMQSATDKFAYIFDGLTSEGYSPLLEPFPVEDPFELFGCRVVPVPIKHGSFDATGY
RFDNAAYLTDCSEIPEGSLPLLEGLELLIIDALRFSPHPNHFNIEGALQMAQKLRPRRTLFTHLTHEVRHSDGSRLPAGV
EFAYDGMTVEL
>Mature_251_residues
MKITILGSGTSTGVPMVGCHCQVCGSTDPRDKRTRASILVESCGQRILVDTSTDLRAQALREGIPHVDAVLFTHTHADHI
HGIDDLRGFYFIHRRIIPCYGSPGTMQSATDKFAYIFDGLTSEGYSPLLEPFPVEDPFELFGCRVVPVPIKHGSFDATGY
RFDNAAYLTDCSEIPEGSLPLLEGLELLIIDALRFSPHPNHFNIEGALQMAQKLRPRRTLFTHLTHEVRHSDGSRLPAGV
EFAYDGMTVEL

Specific function: Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate

COG id: COG1235

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily I

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the lipB family [H]

Homologues:

Organism=Escherichia coli, GI1790530, Length=251, Percent_Identity=29.8804780876494, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR004143
- InterPro:   IPR000544
- InterPro:   IPR020605 [H]

Pfam domain/function: PF03099 BPL_LipA_LipB; PF00753 Lactamase_B [H]

EC number: =2.3.1.181 [H]

Molecular weight: Translated: 27766; Mature: 27766

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITILGSGTSTGVPMVGCHCQVCGSTDPRDKRTRASILVESCGQRILVDTSTDLRAQAL
CEEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHH
REGIPHVDAVLFTHTHADHIHGIDDLRGFYFIHRRIIPCYGSPGTMQSATDKFAYIFDGL
HCCCCCHHEEEEECCCHHHHCCHHHHHHHHEEHHEEEECCCCCCCCCHHHHHHEEEECCC
TSEGYSPLLEPFPVEDPFELFGCRVVPVPIKHGSFDATGYRFDNAAYLTDCSEIPEGSLP
CCCCCCCCCCCCCCCCCHHHHCCEEEEEECCCCCCCCCCEEECCEEEECCHHHCCCCCCC
LLEGLELLIIDALRFSPHPNHFNIEGALQMAQKLRPRRTLFTHLTHEVRHSDGSRLPAGV
HHHCCCEEEEHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCC
EFAYDGMTVEL
EEEECCEEEEC
>Mature Secondary Structure
MKITILGSGTSTGVPMVGCHCQVCGSTDPRDKRTRASILVESCGQRILVDTSTDLRAQAL
CEEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHH
REGIPHVDAVLFTHTHADHIHGIDDLRGFYFIHRRIIPCYGSPGTMQSATDKFAYIFDGL
HCCCCCHHEEEEECCCHHHHCCHHHHHHHHEEHHEEEECCCCCCCCCHHHHHHEEEECCC
TSEGYSPLLEPFPVEDPFELFGCRVVPVPIKHGSFDATGYRFDNAAYLTDCSEIPEGSLP
CCCCCCCCCCCCCCCCCHHHHCCEEEEEECCCCCCCCCCEEECCEEEECCHHHCCCCCCC
LLEGLELLIIDALRFSPHPNHFNIEGALQMAQKLRPRRTLFTHLTHEVRHSDGSRLPAGV
HHHCCCEEEEHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCC
EFAYDGMTVEL
EEEECCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12949112 [H]