| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197116728
Identifier: 197116728
GI number: 197116728
Start: 399701
End: 400852
Strand: Direct
Name: 197116728
Synonym: Gbem_0328
Alternate gene names: NA
Gene position: 399701-400852 (Clockwise)
Preceding gene: 197116727
Following gene: 308535157
Centisome position: 8.66
GC content: 42.88
Gene sequence:
>1152_bases ATGTCTGTTTTAAGCCTTAAACGACTTGATCGTATAAACTGGGACTTTCCTAGTGCTGGAACTGAGTTAGGGTCCGTTCA TTCTATCCATTGGTTCCCAGGAAACTACATTCCACAAATTCCAGCTGCACTTATTCAAGTTCTATCTAGAACTGGCGAAG TAGTGTTTGATCCATTTGGGGGAAGTGGAACAACTGCAATTGAAGCTTTAAAGCTTGGCAGATTCGCTGTGGTCTCTGAC CGTATTTCAGCATGTGTACAAATTACAGAAGCCAAGTTATCTTTGCTTGGCAACCCACTTGATCGTGATGTTTGCAACAA GATATTTTCTTCGTTGACCTTTGAACACCTTTGCCAAAGCACCCAAATAGGTGTCAATGGAGAGGGGAGAGCTGAGGATC TAGAGTGTTGGTACTCCTCTGAGACACTGGGCCAACTTCGCTATATTTGGAAAATAATAGAACTTCAATCATCACAAGTG CAGAAAGTCCTTTTTGCGTTATTTTCAAATGTACTTTTTGCCTGTGCTTCGACCAATGGATCTCGCACACATACTGGGAA GCTGAGGCGACATCACTGGGGTTGGGTGGCTGATAATGTGCGCCCCAAAGAGTTGATTTTCCATAATGCGATAGAATTGT TTTGTAAGAATCTTCGTGCTGTTATGGATACAAACAGAGGTCCGATTTCAACTACCGCTAAAGTTATTCAACAAGATGCC CGTAACATGGAGTTAGAAGACGAATCTGTCGATCTTGTAGTCACTTCTCCTCCCTATGCTGGTGTTATTGATTATACTCA TGCTAACCGACTACTTTATCTTTGGATGGGATGGCCAATGGGGGAAGAACGTGCCGATGAAATCGGTGCTAGGTATAGAC GGAATAGAAAAAATGCTGTGGAGGAATATTTATCTGATATGCGGTTATGTCGAGACCAAATACACAGGGTTCTCAAAAAA GGGTCTTATTGCGCAATTGTGGTTGGTGAATCTAAAAAGTTTCCAAACACTGCAAGTCTCCTTATTGAGGACTTTTCACA GTCCATGCCTATAGTTTGGGGGCCAAAATCGCGCTACTTATCGCGTCGTAGGGTTTCTGATAGGGTTGCTGGAGATCCCG TTGAATTCGTTTGCGTCTTTCAAAAGCTATGA
Upstream 100 bases:
>100_bases CCGATGAGCTAGAACAAATCTTCCAACTTTCAGAGTCGTATTTCTCAACAACGATTATTGGCCTGGCCGCAAACAATAAT AGCCACAATGATATACAAGA
Downstream 100 bases:
>100_bases TTATTTCTTTTTTTGGATCATCATGCACAGGAAAATCGACTCTCGCCAGGCCGTTAGCTAAGTACCTTGGATTACCTCTG AGATCATGCGGCGAGGAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: Adenine-Specific DNA Methylase; Methylase; Type II R/M System; Methyltransferase Cytosine; RNA Methylase
Number of amino acids: Translated: 383; Mature: 382
Protein sequence:
>383_residues MSVLSLKRLDRINWDFPSAGTELGSVHSIHWFPGNYIPQIPAALIQVLSRTGEVVFDPFGGSGTTAIEALKLGRFAVVSD RISACVQITEAKLSLLGNPLDRDVCNKIFSSLTFEHLCQSTQIGVNGEGRAEDLECWYSSETLGQLRYIWKIIELQSSQV QKVLFALFSNVLFACASTNGSRTHTGKLRRHHWGWVADNVRPKELIFHNAIELFCKNLRAVMDTNRGPISTTAKVIQQDA RNMELEDESVDLVVTSPPYAGVIDYTHANRLLYLWMGWPMGEERADEIGARYRRNRKNAVEEYLSDMRLCRDQIHRVLKK GSYCAIVVGESKKFPNTASLLIEDFSQSMPIVWGPKSRYLSRRRVSDRVAGDPVEFVCVFQKL
Sequences:
>Translated_383_residues MSVLSLKRLDRINWDFPSAGTELGSVHSIHWFPGNYIPQIPAALIQVLSRTGEVVFDPFGGSGTTAIEALKLGRFAVVSD RISACVQITEAKLSLLGNPLDRDVCNKIFSSLTFEHLCQSTQIGVNGEGRAEDLECWYSSETLGQLRYIWKIIELQSSQV QKVLFALFSNVLFACASTNGSRTHTGKLRRHHWGWVADNVRPKELIFHNAIELFCKNLRAVMDTNRGPISTTAKVIQQDA RNMELEDESVDLVVTSPPYAGVIDYTHANRLLYLWMGWPMGEERADEIGARYRRNRKNAVEEYLSDMRLCRDQIHRVLKK GSYCAIVVGESKKFPNTASLLIEDFSQSMPIVWGPKSRYLSRRRVSDRVAGDPVEFVCVFQKL >Mature_382_residues SVLSLKRLDRINWDFPSAGTELGSVHSIHWFPGNYIPQIPAALIQVLSRTGEVVFDPFGGSGTTAIEALKLGRFAVVSDR ISACVQITEAKLSLLGNPLDRDVCNKIFSSLTFEHLCQSTQIGVNGEGRAEDLECWYSSETLGQLRYIWKIIELQSSQVQ KVLFALFSNVLFACASTNGSRTHTGKLRRHHWGWVADNVRPKELIFHNAIELFCKNLRAVMDTNRGPISTTAKVIQQDAR NMELEDESVDLVVTSPPYAGVIDYTHANRLLYLWMGWPMGEERADEIGARYRRNRKNAVEEYLSDMRLCRDQIHRVLKKG SYCAIVVGESKKFPNTASLLIEDFSQSMPIVWGPKSRYLSRRRVSDRVAGDPVEFVCVFQKL
Specific function: Unknown
COG id: COG0863
COG function: function code L; DNA modification methylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43274; Mature: 43143
Theoretical pI: Translated: 8.32; Mature: 8.32
Prosite motif: PS00093 N4_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVLSLKRLDRINWDFPSAGTELGSVHSIHWFPGNYIPQIPAALIQVLSRTGEVVFDPFG CCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCC GSGTTAIEALKLGRFAVVSDRISACVQITEAKLSLLGNPLDRDVCNKIFSSLTFEHLCQS CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC TQIGVNGEGRAEDLECWYSSETLGQLRYIWKIIELQSSQVQKVLFALFSNVLFACASTNG CCCCCCCCCCCCHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SRTHTGKLRRHHWGWVADNVRPKELIFHNAIELFCKNLRAVMDTNRGPISTTAKVIQQDA CCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH RNMELEDESVDLVVTSPPYAGVIDYTHANRLLYLWMGWPMGEERADEIGARYRRNRKNAV HCCCCCCCCEEEEEECCCCCCEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH EEYLSDMRLCRDQIHRVLKKGSYCAIVVGESKKFPNTASLLIEDFSQSMPIVWGPKSRYL HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEECCHHHHH SRRRVSDRVAGDPVEFVCVFQKL HHHHHHHHHCCCCHHHHEEECCC >Mature Secondary Structure SVLSLKRLDRINWDFPSAGTELGSVHSIHWFPGNYIPQIPAALIQVLSRTGEVVFDPFG CCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCC GSGTTAIEALKLGRFAVVSDRISACVQITEAKLSLLGNPLDRDVCNKIFSSLTFEHLCQS CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC TQIGVNGEGRAEDLECWYSSETLGQLRYIWKIIELQSSQVQKVLFALFSNVLFACASTNG CCCCCCCCCCCCHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SRTHTGKLRRHHWGWVADNVRPKELIFHNAIELFCKNLRAVMDTNRGPISTTAKVIQQDA CCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH RNMELEDESVDLVVTSPPYAGVIDYTHANRLLYLWMGWPMGEERADEIGARYRRNRKNAV HCCCCCCCCEEEEEECCCCCCEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH EEYLSDMRLCRDQIHRVLKKGSYCAIVVGESKKFPNTASLLIEDFSQSMPIVWGPKSRYL HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEECCHHHHH SRRRVSDRVAGDPVEFVCVFQKL HHHHHHHHHCCCCHHHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA