| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197116727
Identifier: 197116727
GI number: 197116727
Start: 398436
End: 399713
Strand: Direct
Name: 197116727
Synonym: Gbem_0327
Alternate gene names: NA
Gene position: 398436-399713 (Clockwise)
Preceding gene: 308535156
Following gene: 197116728
Centisome position: 8.63
GC content: 40.45
Gene sequence:
>1278_bases GTGGCAACACCACTTTGGAAAAAGCCCTTTACAGATTCTTTGTATGGCCGTATCAGCTTTGACGACACTATTGTAGACTT AATCCAAGAGCCTATCGTCCAGAGACTTAGGCATGTCCGTCTATCGAATATAGATTCAATTGATATGCCTGGAATTTCAA ATATTTCTAGATTTGAGCATGTGCTAGGTGTCGCCCATTTGGCTAGCATAATCAAATTCAGGAAGCCATTGAGCAAGTTT GATAATCTCGCACTTGTTTCGTCTGCATTACTTCATGACTGGGCAATTACGTCTTATGGACATCTGATAGAAGAAGCTCT TCAATATGTTGGGACAGGTTTTGAACATGAATCAACACTTCGCGAAATCCTCAGCAATGGCGATGAGCATGTGGTCGGTG GTATAGATTTCCAAATTCTTTCTGGGAGACCAACTAACCTAAGAAAGTGGTCCAGAAAAAATGTAGGTGTTGAGTCTGAT ACTTTAATTGAAGACATTACAAAATACATTGGCGGAGAAGGAACTCTAGGCCGAATTATATCTTGTGATATCGATATTGA TAATATTGATAATGTCTTTCGAATGGCTTTTCATATGGGAATAAATGTTGATCGCGGTGTACCAACTCGGTTGGCTGGAT CTATTGTAGGTGTTGATGACGGCGGTCCGATCTTCAGTATTTCAGCAAGAGAAGATATTGAAACATGGTGCTCAACTAGA AAGAATGTATATCAGCATTTAATGCTATCTGAACGTGATTTTATTGGGAAAATTATGATGCTTTATGCATCGGTCCTAGC TTTTGAAAATCAAGAAATCACAAAAGAGGACTGGTGCCTGGTGGATCATACGTTGTTATCAACCTTTGCCAAGTCAAAGA CAAAAGAGGTCTGTGAAGCAGTCCAACGTTGGATTTCGGGTGACCTTTGGGTGTGCAGTCCACTGTTTTGGCTACACGGC GATAGACCTAAATACTCAAAATTATTAGAATTTTCTCAAGAGGTGTCGTCTGTCCTTGGGCGTGAATGCTTTGCATACGG GATTAAGGATAAAAGAGATAGACATCTCGCCATCTCATTTGATACGGGGGAAAAAGAAGAATTTGGGACTCATTCAAAGC AATGGCTTCTTGGTGTTGGCTCTTCAAAGAGGGCGGCCTTTAAAACCGATGAGCTAGAACAAATCTTCCAACTTTCAGAG TCGTATTTCTCAACAACGATTATTGGCCTGGCCGCAAACAATAATAGCCACAATGATATACAAGAATGTCTGTTTTAA
Upstream 100 bases:
>100_bases GATGCTTCTAAAAGCTTACGCAAGTATGGTACTGGATTTACGTAAAGTTGGTTCGACTGAAAATAAATAATACTTAGACA ATTATTTAAGGAATATTGCC
Downstream 100 bases:
>100_bases GCCTTAAACGACTTGATCGTATAAACTGGGACTTTCCTAGTGCTGGAACTGAGTTAGGGTCCGTTCATTCTATCCATTGG TTCCCAGGAAACTACATTCC
Product: metal-dependent phosphohydrolase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 425; Mature: 424
Protein sequence:
>425_residues MATPLWKKPFTDSLYGRISFDDTIVDLIQEPIVQRLRHVRLSNIDSIDMPGISNISRFEHVLGVAHLASIIKFRKPLSKF DNLALVSSALLHDWAITSYGHLIEEALQYVGTGFEHESTLREILSNGDEHVVGGIDFQILSGRPTNLRKWSRKNVGVESD TLIEDITKYIGGEGTLGRIISCDIDIDNIDNVFRMAFHMGINVDRGVPTRLAGSIVGVDDGGPIFSISAREDIETWCSTR KNVYQHLMLSERDFIGKIMMLYASVLAFENQEITKEDWCLVDHTLLSTFAKSKTKEVCEAVQRWISGDLWVCSPLFWLHG DRPKYSKLLEFSQEVSSVLGRECFAYGIKDKRDRHLAISFDTGEKEEFGTHSKQWLLGVGSSKRAAFKTDELEQIFQLSE SYFSTTIIGLAANNNSHNDIQECLF
Sequences:
>Translated_425_residues MATPLWKKPFTDSLYGRISFDDTIVDLIQEPIVQRLRHVRLSNIDSIDMPGISNISRFEHVLGVAHLASIIKFRKPLSKF DNLALVSSALLHDWAITSYGHLIEEALQYVGTGFEHESTLREILSNGDEHVVGGIDFQILSGRPTNLRKWSRKNVGVESD TLIEDITKYIGGEGTLGRIISCDIDIDNIDNVFRMAFHMGINVDRGVPTRLAGSIVGVDDGGPIFSISAREDIETWCSTR KNVYQHLMLSERDFIGKIMMLYASVLAFENQEITKEDWCLVDHTLLSTFAKSKTKEVCEAVQRWISGDLWVCSPLFWLHG DRPKYSKLLEFSQEVSSVLGRECFAYGIKDKRDRHLAISFDTGEKEEFGTHSKQWLLGVGSSKRAAFKTDELEQIFQLSE SYFSTTIIGLAANNNSHNDIQECLF >Mature_424_residues ATPLWKKPFTDSLYGRISFDDTIVDLIQEPIVQRLRHVRLSNIDSIDMPGISNISRFEHVLGVAHLASIIKFRKPLSKFD NLALVSSALLHDWAITSYGHLIEEALQYVGTGFEHESTLREILSNGDEHVVGGIDFQILSGRPTNLRKWSRKNVGVESDT LIEDITKYIGGEGTLGRIISCDIDIDNIDNVFRMAFHMGINVDRGVPTRLAGSIVGVDDGGPIFSISAREDIETWCSTRK NVYQHLMLSERDFIGKIMMLYASVLAFENQEITKEDWCLVDHTLLSTFAKSKTKEVCEAVQRWISGDLWVCSPLFWLHGD RPKYSKLLEFSQEVSSVLGRECFAYGIKDKRDRHLAISFDTGEKEEFGTHSKQWLLGVGSSKRAAFKTDELEQIFQLSES YFSTTIIGLAANNNSHNDIQECLF
Specific function: Unknown
COG id: COG1078
COG function: function code R; HD superfamily phosphohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48019; Mature: 47888
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATPLWKKPFTDSLYGRISFDDTIVDLIQEPIVQRLRHVRLSNIDSIDMPGISNISRFEH CCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH VLGVAHLASIIKFRKPLSKFDNLALVSSALLHDWAITSYGHLIEEALQYVGTGFEHESTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH REILSNGDEHVVGGIDFQILSGRPTNLRKWSRKNVGVESDTLIEDITKYIGGEGTLGRII HHHHHCCCCEEECCCEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEE SCDIDIDNIDNVFRMAFHMGINVDRGVPTRLAGSIVGVDDGGPIFSISAREDIETWCSTR EEECCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCEEEECCCCCEEEECCHHHHHHHHHHH KNVYQHLMLSERDFIGKIMMLYASVLAFENQEITKEDWCLVDHTLLSTFAKSKTKEVCEA HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH VQRWISGDLWVCSPLFWLHGDRPKYSKLLEFSQEVSSVLGRECFAYGIKDKRDRHLAISF HHHHHCCCCEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE DTGEKEEFGTHSKQWLLGVGSSKRAAFKTDELEQIFQLSESYFSTTIIGLAANNNSHNDI CCCCCHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHH QECLF HHHCC >Mature Secondary Structure ATPLWKKPFTDSLYGRISFDDTIVDLIQEPIVQRLRHVRLSNIDSIDMPGISNISRFEH CCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH VLGVAHLASIIKFRKPLSKFDNLALVSSALLHDWAITSYGHLIEEALQYVGTGFEHESTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH REILSNGDEHVVGGIDFQILSGRPTNLRKWSRKNVGVESDTLIEDITKYIGGEGTLGRII HHHHHCCCCEEECCCEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEE SCDIDIDNIDNVFRMAFHMGINVDRGVPTRLAGSIVGVDDGGPIFSISAREDIETWCSTR EEECCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCEEEECCCCCEEEECCHHHHHHHHHHH KNVYQHLMLSERDFIGKIMMLYASVLAFENQEITKEDWCLVDHTLLSTFAKSKTKEVCEA HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH VQRWISGDLWVCSPLFWLHGDRPKYSKLLEFSQEVSSVLGRECFAYGIKDKRDRHLAISF HHHHHCCCCEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE DTGEKEEFGTHSKQWLLGVGSSKRAAFKTDELEQIFQLSESYFSTTIIGLAANNNSHNDI CCCCCHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHH QECLF HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA