| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197116717
Identifier: 197116717
GI number: 197116717
Start: 391217
End: 391561
Strand: Direct
Name: 197116717
Synonym: Gbem_0317
Alternate gene names: NA
Gene position: 391217-391561 (Clockwise)
Preceding gene: 197116716
Following gene: 197116719
Centisome position: 8.48
GC content: 51.88
Gene sequence:
>345_bases ATGTCGGAACTTTTCCCCGATCCTGTAAGAAACCTGCCGCAAGCCGACATTCCATTGAAGGGCATAACGGCCTATCTTTC CCAAGCGGACAGCCATCAAATCATCTTCATGCAGTTCGATGAGGATGTGGAGTTGCCTGAGCATTCGCACGAAAGCCAGT GGGGTGTTGTTCTGGAGGGGAGGATCGAGCTGGTGATTGACGGGATAAAGCGGTCATACGTGAAGGGGGATCGCTATTTC ATTCCTCAGGGCGTCCCCCATTCCGGGAGGATCTACGCCGGCTATGCCGACATGACCTTCTTCGATCAACCTGATCGATA CAAGATAAGGGAACCGAATGAATAA
Upstream 100 bases:
>100_bases TCCACCAAGAGGTCAATACTGATCTGAACCCATTTTCTAGAGCCGAGTCAGGTCTGAAAGATTGAACAACTCCCACCCTA TTGAGCTAAGGACATAGTTT
Downstream 100 bases:
>100_bases TGGCAACTTTCAAGGAGGGGGTGGCTATGTTCAGGGCGGCTTGCACTGCGACCACCCAAGGAGCGAAGGGATCAGAGATT CAAACTCTGCCCCCTGGCGC
Product: cupin superfamily barrel domain-containing protein
Products: NA
Alternate protein names: Cupin 2 Conserved Barrel Domain Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin Superfamily Barrel Domain-Containing Protein
Number of amino acids: Translated: 114; Mature: 113
Protein sequence:
>114_residues MSELFPDPVRNLPQADIPLKGITAYLSQADSHQIIFMQFDEDVELPEHSHESQWGVVLEGRIELVIDGIKRSYVKGDRYF IPQGVPHSGRIYAGYADMTFFDQPDRYKIREPNE
Sequences:
>Translated_114_residues MSELFPDPVRNLPQADIPLKGITAYLSQADSHQIIFMQFDEDVELPEHSHESQWGVVLEGRIELVIDGIKRSYVKGDRYF IPQGVPHSGRIYAGYADMTFFDQPDRYKIREPNE >Mature_113_residues SELFPDPVRNLPQADIPLKGITAYLSQADSHQIIFMQFDEDVELPEHSHESQWGVVLEGRIELVIDGIKRSYVKGDRYFI PQGVPHSGRIYAGYADMTFFDQPDRYKIREPNE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13168; Mature: 13037
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELFPDPVRNLPQADIPLKGITAYLSQADSHQIIFMQFDEDVELPEHSHESQWGVVLEG CCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECC RIELVIDGIKRSYVKGDRYFIPQGVPHSGRIYAGYADMTFFDQPDRYKIREPNE EEEEEEECHHHHHCCCCEEECCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCC >Mature Secondary Structure SELFPDPVRNLPQADIPLKGITAYLSQADSHQIIFMQFDEDVELPEHSHESQWGVVLEG CCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECC RIELVIDGIKRSYVKGDRYFIPQGVPHSGRIYAGYADMTFFDQPDRYKIREPNE EEEEEEECHHHHHCCCCEEECCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA