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The map label for this gene is yiaD [H]

Identifier: 197116705

GI number: 197116705

Start: 378738

End: 379247

Strand: Direct

Name: yiaD [H]

Synonym: Gbem_0305

Alternate gene names: 197116705

Gene position: 378738-379247 (Clockwise)

Preceding gene: 197116704

Following gene: 197116706

Centisome position: 8.21

GC content: 56.27

Gene sequence:

>510_bases
ATGTTTAAAAAAGTTGCTATTGCTGCTGTACTGTCGCTGATGGTTTCCGGTGTTGCCTATGCAGGGCTTGACGCTCTCAA
GGGCCTGGGAAAAGAAGCAGGGAAGGGCGTTGCTGCCAGTGCTAAGGAAGGCGCACTCAGTGCCGTGACCAACAAGCTCA
AGAAGGTGCAGAACGAGAAAGGCCCGATCAAGTTCAAGACCGGCAAAGCCGAGATCGATCCTTCCTGCGACAAGACCATG
ACCGCCATCGCGGCAATCATGACCGACTACCCCGGCTTCCACGTACAGGTTGACGGCCACACCGACAACGTCGGCAAGCC
CGAGGCAAACCAGAAGCTTTCCCAGGATCGTGCCGATGCCGTAGTGAAATACCTGGTGGACAAGAAAGCCGTCGATGCCA
AGCGCCTCTCCGCTAAAGGGTTCGGCGACAGCAAGCCCATCGCCGACAACAAGACCAAAGCCGGCCAAGCCAAAAACCGC
CGCGTAGATTTCACCGTCACCAAGATGTAG

Upstream 100 bases:

>100_bases
GCATCTTTCTTTCTCTCATCGTTGACTCAGTGGAGATGCCGGATAATATTTGGTGGGCTTTGGCAATGCCTAAGCCGGCT
AAAACAACAAAGGAGGGTGT

Downstream 100 bases:

>100_bases
TCAATCAAAAGGGGGAGCCGCAAGGCTCCCCTTTTTCAGCCTCTAATCCCAGACTTCCCGATCTTCCTCCAGTCCCCTCG
TCCTTTGGGAGAGGGTGCCC

Product: OmpA family outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MFKKVAIAAVLSLMVSGVAYAGLDALKGLGKEAGKGVAASAKEGALSAVTNKLKKVQNEKGPIKFKTGKAEIDPSCDKTM
TAIAAIMTDYPGFHVQVDGHTDNVGKPEANQKLSQDRADAVVKYLVDKKAVDAKRLSAKGFGDSKPIADNKTKAGQAKNR
RVDFTVTKM

Sequences:

>Translated_169_residues
MFKKVAIAAVLSLMVSGVAYAGLDALKGLGKEAGKGVAASAKEGALSAVTNKLKKVQNEKGPIKFKTGKAEIDPSCDKTM
TAIAAIMTDYPGFHVQVDGHTDNVGKPEANQKLSQDRADAVVKYLVDKKAVDAKRLSAKGFGDSKPIADNKTKAGQAKNR
RVDFTVTKM
>Mature_169_residues
MFKKVAIAAVLSLMVSGVAYAGLDALKGLGKEAGKGVAASAKEGALSAVTNKLKKVQNEKGPIKFKTGKAEIDPSCDKTM
TAIAAIMTDYPGFHVQVDGHTDNVGKPEANQKLSQDRADAVVKYLVDKKAVDAKRLSAKGFGDSKPIADNKTKAGQAKNR
RVDFTVTKM

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=114, Percent_Identity=36.8421052631579, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788957, Length=105, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 17823; Mature: 17823

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKKVAIAAVLSLMVSGVAYAGLDALKGLGKEAGKGVAASAKEGALSAVTNKLKKVQNEK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
GPIKFKTGKAEIDPSCDKTMTAIAAIMTDYPGFHVQVDGHTDNVGKPEANQKLSQDRADA
CCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
VVKYLVDKKAVDAKRLSAKGFGDSKPIADNKTKAGQAKNRRVDFTVTKM
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MFKKVAIAAVLSLMVSGVAYAGLDALKGLGKEAGKGVAASAKEGALSAVTNKLKKVQNEK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
GPIKFKTGKAEIDPSCDKTMTAIAAIMTDYPGFHVQVDGHTDNVGKPEANQKLSQDRADA
CCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
VVKYLVDKKAVDAKRLSAKGFGDSKPIADNKTKAGQAKNRRVDFTVTKM
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]