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The map label for this gene is yedQ [H]

Identifier: 197116670

GI number: 197116670

Start: 320485

End: 321711

Strand: Direct

Name: yedQ [H]

Synonym: Gbem_0270

Alternate gene names: 197116670

Gene position: 320485-321711 (Clockwise)

Preceding gene: 308535154

Following gene: 197116671

Centisome position: 6.94

GC content: 60.55

Gene sequence:

>1227_bases
GTGAAGCAACTCCGCATTTTCCCCAAGAGCAGTTCCATAAGAAATCCCGATTCCCTGCTGCGCCTTTTCGTTATCATCGC
GCTAGTTTCCACCTTCGTCATCACCATAGCGGCGGGTCTTGTCTTCGTCGAGGTGCTGCAGCGCCATGTAATCCGCAACG
CCGAAGAAGATGCCATAAAGGTAAGCAGCGCCCTCCTCGCGACTGACCGTGCGCGCCTTACCGCCAGGCAGGCCGACGGC
AGCGTCAAGGTTGCGGTCGCCTCGGCCGACCTGCCGGAGATGGACCGCCACTTCAGGAAGTTCCTTTCCCCCTTCGACAT
CGTCAAGATCAAGATCTACTCCGCCGACAGCACCATCGTCTACAGCACCGAGGCAAGCCTCATCGGCAAGGTCGACAACC
ACAACTCCCGGCTGGACCACGCCTTGGAGGGGCTCTTCGACTCGAAGCTGGAGAGGAAGGAAGAGGTGAAAGACCTGGCC
TCCGAGATGAAGTTCAACGTGGACGTAGTGGAAACGTACATCCCGATCTGGGATAACGGCCAAGTGATCGGGAGCTTCGA
GGTCTACATCGACGTCACCGAGTACCGCCACGATACGGCGAATACCGCGTCCTTGGCGCTCGGCGCCCTGGCGGGCATCC
TGGTCGTGGTTTTCGGCATCTCTTACTTCCTGGTCCGAAAGGGGACGAGGGAGATCAAGGAGATCCAGGAGGTGCTGAAA
AAGCAGACCATGACCGATGCCCTCACCGGGACCTTCAACAAGGGCCAAATCGAGCTTTTGGCGTGCAAGGAGTTCGCCCG
CTGTGTCCGCAGAAACGAGAAAGGGCTCGGGGACGCGGACCTGGGGTTCATCATGATCGACATCGACCGGTTCAAGGAAG
TAAACGACAACTACGGGCATCTGGCGGGGGACGTCCTGCTGCAGCAGTTCGCGGCCAGGATCGCGCGCTCGCTGCGCAAC
TACGATTCCATCGGGCGTTTCGGCGGCGAGGAATTCCTGGTGATGCTCCCAGGCTCCGACCTCGAGCAGACGCGGGCAGT
CGCGCAGAAAATTTGGTCCCTGCTTCGGGAAGAGCCTTACCTCGTCGATGGGCGTGAAATCGACCTGACCGCGAGCCTCG
GCGCCGCCGCCGTCAAAGAGGGGGACGCCGACCTGCTCCATGTCCTCAAGCGGGCGGACCAGAGGCTCTACGCCGCTAAA
AGCGCTGGGCGCGACCGGGTAGTCTGA

Upstream 100 bases:

>100_bases
CTACATGAATCTCAGCATCGTTTTCCTCGTGGTGCTGATACTTGCCCTTTGGCGCTGGGCTTAGATAGATCCCCGGCAAA
ACCGGGAAGAAGGAAGGGTC

Downstream 100 bases:

>100_bases
TCGCCTACAGGCTCGGCGAGCCTTCCCCGCCGCCTCTTTTCACCCGTTTCTCACCCCGATGGCACCTTCCCCCACCCCCT
GACCCCCTCCCGCAAGGGGA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MKQLRIFPKSSSIRNPDSLLRLFVIIALVSTFVITIAAGLVFVEVLQRHVIRNAEEDAIKVSSALLATDRARLTARQADG
SVKVAVASADLPEMDRHFRKFLSPFDIVKIKIYSADSTIVYSTEASLIGKVDNHNSRLDHALEGLFDSKLERKEEVKDLA
SEMKFNVDVVETYIPIWDNGQVIGSFEVYIDVTEYRHDTANTASLALGALAGILVVVFGISYFLVRKGTREIKEIQEVLK
KQTMTDALTGTFNKGQIELLACKEFARCVRRNEKGLGDADLGFIMIDIDRFKEVNDNYGHLAGDVLLQQFAARIARSLRN
YDSIGRFGGEEFLVMLPGSDLEQTRAVAQKIWSLLREEPYLVDGREIDLTASLGAAAVKEGDADLLHVLKRADQRLYAAK
SAGRDRVV

Sequences:

>Translated_408_residues
MKQLRIFPKSSSIRNPDSLLRLFVIIALVSTFVITIAAGLVFVEVLQRHVIRNAEEDAIKVSSALLATDRARLTARQADG
SVKVAVASADLPEMDRHFRKFLSPFDIVKIKIYSADSTIVYSTEASLIGKVDNHNSRLDHALEGLFDSKLERKEEVKDLA
SEMKFNVDVVETYIPIWDNGQVIGSFEVYIDVTEYRHDTANTASLALGALAGILVVVFGISYFLVRKGTREIKEIQEVLK
KQTMTDALTGTFNKGQIELLACKEFARCVRRNEKGLGDADLGFIMIDIDRFKEVNDNYGHLAGDVLLQQFAARIARSLRN
YDSIGRFGGEEFLVMLPGSDLEQTRAVAQKIWSLLREEPYLVDGREIDLTASLGAAAVKEGDADLLHVLKRADQRLYAAK
SAGRDRVV
>Mature_408_residues
MKQLRIFPKSSSIRNPDSLLRLFVIIALVSTFVITIAAGLVFVEVLQRHVIRNAEEDAIKVSSALLATDRARLTARQADG
SVKVAVASADLPEMDRHFRKFLSPFDIVKIKIYSADSTIVYSTEASLIGKVDNHNSRLDHALEGLFDSKLERKEEVKDLA
SEMKFNVDVVETYIPIWDNGQVIGSFEVYIDVTEYRHDTANTASLALGALAGILVVVFGISYFLVRKGTREIKEIQEVLK
KQTMTDALTGTFNKGQIELLACKEFARCVRRNEKGLGDADLGFIMIDIDRFKEVNDNYGHLAGDVLLQQFAARIARSLRN
YDSIGRFGGEEFLVMLPGSDLEQTRAVAQKIWSLLREEPYLVDGREIDLTASLGAAAVKEGDADLLHVLKRADQRLYAAK
SAGRDRVV

Specific function: Involves in the regulation of cellulose production [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=206, Percent_Identity=35.9223300970874, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1786584, Length=210, Percent_Identity=31.4285714285714, Blast_Score=95, Evalue=9e-21,
Organism=Escherichia coli, GI1788381, Length=126, Percent_Identity=37.3015873015873, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI145693134, Length=173, Percent_Identity=31.7919075144509, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1787816, Length=139, Percent_Identity=35.2517985611511, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787541, Length=187, Percent_Identity=32.0855614973262, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87081881, Length=187, Percent_Identity=32.0855614973262, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787262, Length=131, Percent_Identity=35.8778625954198, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787802, Length=133, Percent_Identity=34.5864661654135, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87081974, Length=169, Percent_Identity=29.585798816568, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=173, Percent_Identity=31.7919075144509, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787056, Length=126, Percent_Identity=35.7142857142857, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 45441; Mature: 45441

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLRIFPKSSSIRNPDSLLRLFVIIALVSTFVITIAAGLVFVEVLQRHVIRNAEEDAIK
CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
VSSALLATDRARLTARQADGSVKVAVASADLPEMDRHFRKFLSPFDIVKIKIYSADSTIV
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEECCCEEE
YSTEASLIGKVDNHNSRLDHALEGLFDSKLERKEEVKDLASEMKFNVDVVETYIPIWDNG
EECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
QVIGSFEVYIDVTEYRHDTANTASLALGALAGILVVVFGISYFLVRKGTREIKEIQEVLK
EEEEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KQTMTDALTGTFNKGQIELLACKEFARCVRRNEKGLGDADLGFIMIDIDRFKEVNDNYGH
HHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHCCCCCCH
LAGDVLLQQFAARIARSLRNYDSIGRFGGEEFLVMLPGSDLEQTRAVAQKIWSLLREEPY
HHHHHHHHHHHHHHHHHHHCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCC
LVDGREIDLTASLGAAAVKEGDADLLHVLKRADQRLYAAKSAGRDRVV
EECCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKQLRIFPKSSSIRNPDSLLRLFVIIALVSTFVITIAAGLVFVEVLQRHVIRNAEEDAIK
CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
VSSALLATDRARLTARQADGSVKVAVASADLPEMDRHFRKFLSPFDIVKIKIYSADSTIV
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEECCCEEE
YSTEASLIGKVDNHNSRLDHALEGLFDSKLERKEEVKDLASEMKFNVDVVETYIPIWDNG
EECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
QVIGSFEVYIDVTEYRHDTANTASLALGALAGILVVVFGISYFLVRKGTREIKEIQEVLK
EEEEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KQTMTDALTGTFNKGQIELLACKEFARCVRRNEKGLGDADLGFIMIDIDRFKEVNDNYGH
HHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHCCCCCCH
LAGDVLLQQFAARIARSLRNYDSIGRFGGEEFLVMLPGSDLEQTRAVAQKIWSLLREEPY
HHHHHHHHHHHHHHHHHHHCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCC
LVDGREIDLTASLGAAAVKEGDADLLHVLKRADQRLYAAKSAGRDRVV
EECCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]