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The map label for this gene is rnz [H]

Identifier: 197116645

GI number: 197116645

Start: 288913

End: 289944

Strand: Reverse

Name: rnz [H]

Synonym: Gbem_0245

Alternate gene names: 197116645

Gene position: 289944-288913 (Counterclockwise)

Preceding gene: 197116652

Following gene: 197116641

Centisome position: 6.28

GC content: 65.31

Gene sequence:

>1032_bases
ATGACACCGCACTTCCTGCCGGCCCTGGTGAACCCTCCCTTCGGCGACCCCGGCCTCTACGTCGACTTCCTCTTCGCGCG
CCGGGCCGTCCTCTTCGACCTGGGGGACCTGGCGCCGCTTCCCACGCGCAAGCTCTTGCGGGTGAGCGACATCTGCATCT
CGCACACGCACATCGACCACTTCATCGGCTTCGACCTTGTGCTACGCATCATGCTGGGACGGGACAAAGAAGTGAGGCTG
TACGGTCCCTCAGGCATCCTGCGGCAGGTGGAGCACCGCCTCGCGTCCTACAGCTGGAACCTGATTCAAAGCTATCCCAC
CGAGTTCGTCCTCACCGTCACCGAACTCCATCCCGACGGCAGCGCGCAAAGGGCAAGCTTCAGCTCCCGGCGCATCTTTG
AAAGGGAAAACCAGCAGGAACTCATGCTCCCCGAGGGCGTCGTGCTGGACGAGGGGAACCTGCGCATCCGCGCCACCTTC
CTGGAGCACAGCATCCCCTGCCTCGCCTATGCTTTCGAGGAAAAGCTCCACGTAAACTTCATGAAGAACCGGCTGGCCGA
GCTGGGCCTGCCGGTCGGCCCCTGGCTTTCCGAAGTAAAGCGCGCGGTGCTCAGGGGAGAGCCGGACGATACCCTGGTCT
ATCCCGCGGCTGCGGGCGAGGAGCGCCCGGCTTCCGGCTGGACCATAGCAAAGCTGAAAGAAAAGGTGCTGCAGGTGGTG
CCGGGGGAAAAGATCGCCTATGTCACCGACACCGCCTTCACCAATGAGAACCGCCGGCGCATCGTGGAGCTGGCGCGGGA
CGCAGACTACCTCTTCATCGAGGCGGTCTTCCTGCACGTCGACTCTGAGCGGGCGCGCGACCGTGCGCACCTGACCGCCC
GGCAGGCCGGGGAGCTGGCCCGGGAGGCGGGGGTGGCGAGGGTCCTCCCCTTCCACTTCTCCCCCAGGCATTTGGGGGCC
GAAGCGGAGCTTCGGCGCGAGGTTAATCTGGCGTTCGCGGCCTCCCCCCTCCAAGAGGAGGAGAGCGGGTAG

Upstream 100 bases:

>100_bases
GGGGAGCCCCACCGGGTTCCCCTATTTTTTTGGCTTGCGCCGCAGCATTAATGGTTATATAGCAGACGGGACCGTACCCA
AACTAGAAGGAGCCCGCGCC

Downstream 100 bases:

>100_bases
AGCCGTGGCCGGCTCGCAATGCGGCCAGGTGTTGTGGTAATAGAAAAGGGGGCCAGTCACCTGTGCCCCCTTCGATACCG
CAACGACCTTCTTATTACCT

Product: ribonuclease Z

Products: NA

Alternate protein names: RNase Z; tRNA 3 endonuclease; tRNase Z [H]

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MTPHFLPALVNPPFGDPGLYVDFLFARRAVLFDLGDLAPLPTRKLLRVSDICISHTHIDHFIGFDLVLRIMLGRDKEVRL
YGPSGILRQVEHRLASYSWNLIQSYPTEFVLTVTELHPDGSAQRASFSSRRIFERENQQELMLPEGVVLDEGNLRIRATF
LEHSIPCLAYAFEEKLHVNFMKNRLAELGLPVGPWLSEVKRAVLRGEPDDTLVYPAAAGEERPASGWTIAKLKEKVLQVV
PGEKIAYVTDTAFTNENRRRIVELARDADYLFIEAVFLHVDSERARDRAHLTARQAGELAREAGVARVLPFHFSPRHLGA
EAELRREVNLAFAASPLQEEESG

Sequences:

>Translated_343_residues
MTPHFLPALVNPPFGDPGLYVDFLFARRAVLFDLGDLAPLPTRKLLRVSDICISHTHIDHFIGFDLVLRIMLGRDKEVRL
YGPSGILRQVEHRLASYSWNLIQSYPTEFVLTVTELHPDGSAQRASFSSRRIFERENQQELMLPEGVVLDEGNLRIRATF
LEHSIPCLAYAFEEKLHVNFMKNRLAELGLPVGPWLSEVKRAVLRGEPDDTLVYPAAAGEERPASGWTIAKLKEKVLQVV
PGEKIAYVTDTAFTNENRRRIVELARDADYLFIEAVFLHVDSERARDRAHLTARQAGELAREAGVARVLPFHFSPRHLGA
EAELRREVNLAFAASPLQEEESG
>Mature_342_residues
TPHFLPALVNPPFGDPGLYVDFLFARRAVLFDLGDLAPLPTRKLLRVSDICISHTHIDHFIGFDLVLRIMLGRDKEVRLY
GPSGILRQVEHRLASYSWNLIQSYPTEFVLTVTELHPDGSAQRASFSSRRIFERENQQELMLPEGVVLDEGNLRIRATFL
EHSIPCLAYAFEEKLHVNFMKNRLAELGLPVGPWLSEVKRAVLRGEPDDTLVYPAAAGEERPASGWTIAKLKEKVLQVVP
GEKIAYVTDTAFTNENRRRIVELARDADYLFIEAVFLHVDSERARDRAHLTARQAGELAREAGVARVLPFHFSPRHLGAE
AELRREVNLAFAASPLQEEESG

Specific function: Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA [H]

COG id: COG1234

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily III

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase Z family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: =3.1.26.11 [H]

Molecular weight: Translated: 38751; Mature: 38620

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPHFLPALVNPPFGDPGLYVDFLFARRAVLFDLGDLAPLPTRKLLRVSDICISHTHIDH
CCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
FIGFDLVLRIMLGRDKEVRLYGPSGILRQVEHRLASYSWNLIQSYPTEFVLTVTELHPDG
HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCHHHHHHCCCEEEEEEEEECCCC
SAQRASFSSRRIFERENQQELMLPEGVVLDEGNLRIRATFLEHSIPCLAYAFEEKLHVNF
CCHHHCCHHHHHHHCCCCCCEECCCCEEEECCCEEEEEEEHHCCCCHHHHHHHHHHHHHH
MKNRLAELGLPVGPWLSEVKRAVLRGEPDDTLVYPAAAGEERPASGWTIAKLKEKVLQVV
HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHC
PGEKIAYVTDTAFTNENRRRIVELARDADYLFIEAVFLHVDSERARDRAHLTARQAGELA
CCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHH
REAGVARVLPFHFSPRHLGAEAELRREVNLAFAASPLQEEESG
HHCCCEEEEECCCCHHHCCCHHHHHHHHCEEEECCCCHHCCCC
>Mature Secondary Structure 
TPHFLPALVNPPFGDPGLYVDFLFARRAVLFDLGDLAPLPTRKLLRVSDICISHTHIDH
CCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
FIGFDLVLRIMLGRDKEVRLYGPSGILRQVEHRLASYSWNLIQSYPTEFVLTVTELHPDG
HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCHHHHHHCCCEEEEEEEEECCCC
SAQRASFSSRRIFERENQQELMLPEGVVLDEGNLRIRATFLEHSIPCLAYAFEEKLHVNF
CCHHHCCHHHHHHHCCCCCCEECCCCEEEECCCEEEEEEEHHCCCCHHHHHHHHHHHHHH
MKNRLAELGLPVGPWLSEVKRAVLRGEPDDTLVYPAAAGEERPASGWTIAKLKEKVLQVV
HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHC
PGEKIAYVTDTAFTNENRRRIVELARDADYLFIEAVFLHVDSERARDRAHLTARQAGELA
CCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHH
REAGVARVLPFHFSPRHLGAEAELRREVNLAFAASPLQEEESG
HHCCCEEEEECCCCHHHCCCHHHHHHHHCEEEECCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]