| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is kbl [C]
Identifier: 197116449
GI number: 197116449
Start: 57638
End: 58828
Strand: Reverse
Name: kbl [C]
Synonym: Gbem_0049
Alternate gene names: 197116449
Gene position: 58828-57638 (Counterclockwise)
Preceding gene: 197116450
Following gene: 197116441
Centisome position: 1.27
GC content: 64.82
Gene sequence:
>1191_bases ATGTCCGAGAAGTTCGAGTGGATCAATGAGGAAATGGAGGCCCTGAAACAGCAGGGGCTGAAGACGCATATCCGCACCAT CGGTTCGGCCTGCGGCCCCTGGATGGTGGTCGACGGCAAGAAGGTGCTCAATTTCTGCACCAACAACTACCTGGGGCTCG CCAACCACCCGCGGCTCAAGGAGGCGGCCCGGGCCGCGGTACAGATCTGGGGAGTGGGGCCGGCGGCGGTCAGAAGCATC GCCGGGACCCTGGAGTTGCACCGGTTGCTGGAGGAGCGGCTGGCCGCCTTCAAGGGGGTCGAGGACGCCCTCTACGTCCA GTCCGGGTTTTGCGCCAACCAGGCGGCCATCCCCTCCATGGTGGGGAAGGGGGACGTCATCTTCACCGACCGGCTGAACC ACGCCAGCATCATCGACGGCTGCAGGCTTTCCTCCGCCCGGGTCGTGGTGTACGAGCACTGCGACGTAGAGGATTGCGAA CGTGCCATCAAGGAGAACCTGGGGGAGTACCGGCGGGCCCTTTTGATCACCGACGGGGTCTTTTCCATGGACGGCGACAT AGCCCCCTTGGACCGGCTCTTCGAGCTCTGCGAGCGCCACGGCATCATCACCATGGTGGACGACGCCCACGGCGAGGGGG TCCTTGGGCGCGGCGGGCGCGGCATCGTGGACCACTTCCAGCTGAACGGGAAGTTCGACCTGGAGATAGGGACCCTCTCC AAGGCCTTCGGCGTCATGGGCGGGGTCATTGCCGGGAGCAGCACGGTCATCGAGTGGATCCGGCAGAAGGCGCGCCCTTT CCTCTTTTCGAGCGCGGTAACCGCCGCCGACACGGCGGCGTGCCTCGCTGCGGTCGACCTGTTGGAGGAGGGGACCGAGC TGGTAGAGCGGCTCTGGGAAAACACGCGCTACTTCAAGGAGGGGATGCGGGGAGCTGGGTTCGACATCGGCGCCAGCGTC ACTCCAATCACGCCGGTGATGATCGGGGACGCGACGCTCGCCCAAAATTTTTCGCGCATGCTCTTCGATTCCGACCCCGG AATCTTCGCCATGCCGATCGGCTACCCGACCGTCCCGCAAGGGAAGGCGCGCATCAGGGTCATGATCAGCGCCTCCCACT CCCGTGAAGATCTCGACCTTGGGCTGGACATCTTCACCCGGATCGGGAAGTCCGTGGGGGTCATCGGCTGA
Upstream 100 bases:
>100_bases ACGGAGTTCGAAGAGGCGTTCCGGGTGATGAGCACCGGCAACGCCGGGAAGGTGATGCTCAACTGGGTCGAGGAGTGAAA ATCACGCCAGGAGGCAAAGG
Downstream 100 bases:
>100_bases CCTCAGCGGGTGTCTACCGAGCCGAACAGAAAGCCCCCTCCTCCCGGAAACCGATGGGAAAAAGAGGGGGCTTTTTTAGT CCCTGGTTCCCAATCTCCAG
Product: 2-amino-3-ketobutyrate--coenzyme A ligase
Products: NA
Alternate protein names: AONS/AKB ligase; 7-keto-8-amino-pelargonic acid synthase; 7-KAP synthase; KAPA synthase; 8-amino-7-ketopelargonate synthase; Alpha-oxoamine synthase; L-alanine--pimeloyl-CoA ligase [H]
Number of amino acids: Translated: 396; Mature: 395
Protein sequence:
>396_residues MSEKFEWINEEMEALKQQGLKTHIRTIGSACGPWMVVDGKKVLNFCTNNYLGLANHPRLKEAARAAVQIWGVGPAAVRSI AGTLELHRLLEERLAAFKGVEDALYVQSGFCANQAAIPSMVGKGDVIFTDRLNHASIIDGCRLSSARVVVYEHCDVEDCE RAIKENLGEYRRALLITDGVFSMDGDIAPLDRLFELCERHGIITMVDDAHGEGVLGRGGRGIVDHFQLNGKFDLEIGTLS KAFGVMGGVIAGSSTVIEWIRQKARPFLFSSAVTAADTAACLAAVDLLEEGTELVERLWENTRYFKEGMRGAGFDIGASV TPITPVMIGDATLAQNFSRMLFDSDPGIFAMPIGYPTVPQGKARIRVMISASHSREDLDLGLDIFTRIGKSVGVIG
Sequences:
>Translated_396_residues MSEKFEWINEEMEALKQQGLKTHIRTIGSACGPWMVVDGKKVLNFCTNNYLGLANHPRLKEAARAAVQIWGVGPAAVRSI AGTLELHRLLEERLAAFKGVEDALYVQSGFCANQAAIPSMVGKGDVIFTDRLNHASIIDGCRLSSARVVVYEHCDVEDCE RAIKENLGEYRRALLITDGVFSMDGDIAPLDRLFELCERHGIITMVDDAHGEGVLGRGGRGIVDHFQLNGKFDLEIGTLS KAFGVMGGVIAGSSTVIEWIRQKARPFLFSSAVTAADTAACLAAVDLLEEGTELVERLWENTRYFKEGMRGAGFDIGASV TPITPVMIGDATLAQNFSRMLFDSDPGIFAMPIGYPTVPQGKARIRVMISASHSREDLDLGLDIFTRIGKSVGVIG >Mature_395_residues SEKFEWINEEMEALKQQGLKTHIRTIGSACGPWMVVDGKKVLNFCTNNYLGLANHPRLKEAARAAVQIWGVGPAAVRSIA GTLELHRLLEERLAAFKGVEDALYVQSGFCANQAAIPSMVGKGDVIFTDRLNHASIIDGCRLSSARVVVYEHCDVEDCER AIKENLGEYRRALLITDGVFSMDGDIAPLDRLFELCERHGIITMVDDAHGEGVLGRGGRGIVDHFQLNGKFDLEIGTLSK AFGVMGGVIAGSSTVIEWIRQKARPFLFSSAVTAADTAACLAAVDLLEEGTELVERLWENTRYFKEGMRGAGFDIGASVT PITPVMIGDATLAQNFSRMLFDSDPGIFAMPIGYPTVPQGKARIRVMISASHSREDLDLGLDIFTRIGKSVGVIG
Specific function: Catalyzes the decarboxylative condensation of pimeloyl- CoA and L-alanine to produce 8-amino-7-oxononanoate (AON), coenzyme A and/or converts 2-amino-3-ketobutyrate to glycine and acetyl-CoA [H]
COG id: COG0156
COG function: function code H; 7-keto-8-aminopelargonate synthetase and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI7657118, Length=389, Percent_Identity=40.3598971722365, Blast_Score=272, Evalue=4e-73, Organism=Homo sapiens, GI284448556, Length=415, Percent_Identity=37.8313253012048, Blast_Score=262, Evalue=4e-70, Organism=Homo sapiens, GI4758668, Length=367, Percent_Identity=32.1525885558583, Blast_Score=206, Evalue=3e-53, Organism=Homo sapiens, GI119220554, Length=372, Percent_Identity=31.1827956989247, Blast_Score=199, Evalue=4e-51, Organism=Homo sapiens, GI83977440, Length=347, Percent_Identity=31.700288184438, Blast_Score=184, Evalue=2e-46, Organism=Homo sapiens, GI83977442, Length=347, Percent_Identity=31.700288184438, Blast_Score=183, Evalue=2e-46, Organism=Homo sapiens, GI83977444, Length=347, Percent_Identity=31.700288184438, Blast_Score=183, Evalue=2e-46, Organism=Homo sapiens, GI4502025, Length=363, Percent_Identity=31.129476584022, Blast_Score=167, Evalue=1e-41, Organism=Homo sapiens, GI40316939, Length=363, Percent_Identity=31.129476584022, Blast_Score=167, Evalue=1e-41, Organism=Homo sapiens, GI5454084, Length=309, Percent_Identity=30.42071197411, Blast_Score=150, Evalue=2e-36, Organism=Escherichia coli, GI1790046, Length=396, Percent_Identity=43.6868686868687, Blast_Score=322, Evalue=2e-89, Organism=Escherichia coli, GI1786993, Length=361, Percent_Identity=34.6260387811634, Blast_Score=208, Evalue=5e-55, Organism=Caenorhabditis elegans, GI71994529, Length=393, Percent_Identity=38.676844783715, Blast_Score=278, Evalue=3e-75, Organism=Caenorhabditis elegans, GI32566772, Length=372, Percent_Identity=34.1397849462366, Blast_Score=217, Evalue=1e-56, Organism=Caenorhabditis elegans, GI17560914, Length=365, Percent_Identity=29.3150684931507, Blast_Score=180, Evalue=1e-45, Organism=Caenorhabditis elegans, GI17560912, Length=365, Percent_Identity=29.3150684931507, Blast_Score=180, Evalue=1e-45, Organism=Caenorhabditis elegans, GI71982625, Length=305, Percent_Identity=27.2131147540984, Blast_Score=137, Evalue=8e-33, Organism=Caenorhabditis elegans, GI71982617, Length=305, Percent_Identity=27.2131147540984, Blast_Score=137, Evalue=9e-33, Organism=Saccharomyces cerevisiae, GI6320267, Length=369, Percent_Identity=29.5392953929539, Blast_Score=173, Evalue=4e-44, Organism=Saccharomyces cerevisiae, GI6320438, Length=380, Percent_Identity=28.1578947368421, Blast_Score=171, Evalue=2e-43, Organism=Saccharomyces cerevisiae, GI6323954, Length=267, Percent_Identity=27.7153558052434, Blast_Score=127, Evalue=3e-30, Organism=Drosophila melanogaster, GI24662918, Length=393, Percent_Identity=40.7124681933842, Blast_Score=305, Evalue=4e-83, Organism=Drosophila melanogaster, GI17137420, Length=344, Percent_Identity=32.2674418604651, Blast_Score=181, Evalue=7e-46, Organism=Drosophila melanogaster, GI17136286, Length=372, Percent_Identity=28.7634408602151, Blast_Score=173, Evalue=2e-43, Organism=Drosophila melanogaster, GI24653280, Length=333, Percent_Identity=29.4294294294294, Blast_Score=157, Evalue=2e-38, Organism=Drosophila melanogaster, GI24653276, Length=333, Percent_Identity=29.4294294294294, Blast_Score=157, Evalue=2e-38, Organism=Drosophila melanogaster, GI24653278, Length=333, Percent_Identity=29.4294294294294, Blast_Score=157, Evalue=2e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001917 - InterPro: IPR004839 - InterPro: IPR004723 - InterPro: IPR010962 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =2.3.1.29; =2.3.1.47 [H]
Molecular weight: Translated: 43050; Mature: 42919
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: PS00599 AA_TRANSFER_CLASS_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKFEWINEEMEALKQQGLKTHIRTIGSACGPWMVVDGKKVLNFCTNNYLGLANHPRLK CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCHHH EAARAAVQIWGVGPAAVRSIAGTLELHRLLEERLAAFKGVEDALYVQSGFCANQAAIPSM HHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHH VGKGDVIFTDRLNHASIIDGCRLSSARVVVYEHCDVEDCERAIKENLGEYRRALLITDGV CCCCCEEEECCCCCCHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHEEEEECCC FSMDGDIAPLDRLFELCERHGIITMVDDAHGEGVLGRGGRGIVDHFQLNGKFDLEIGTLS CCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCCCCEEEECCEEEEEEHHHH KAFGVMGGVIAGSSTVIEWIRQKARPFLFSSAVTAADTAACLAAVDLLEEGTELVERLWE HHHHHHHHHHCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NTRYFKEGMRGAGFDIGASVTPITPVMIGDATLAQNFSRMLFDSDPGIFAMPIGYPTVPQ HHHHHHHCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCCC GKARIRVMISASHSREDLDLGLDIFTRIGKSVGVIG CCCEEEEEEECCCCCCHHHHHHHHHHHCCHHCCCCC >Mature Secondary Structure SEKFEWINEEMEALKQQGLKTHIRTIGSACGPWMVVDGKKVLNFCTNNYLGLANHPRLK CCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCHHH EAARAAVQIWGVGPAAVRSIAGTLELHRLLEERLAAFKGVEDALYVQSGFCANQAAIPSM HHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHH VGKGDVIFTDRLNHASIIDGCRLSSARVVVYEHCDVEDCERAIKENLGEYRRALLITDGV CCCCCEEEECCCCCCHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHEEEEECCC FSMDGDIAPLDRLFELCERHGIITMVDDAHGEGVLGRGGRGIVDHFQLNGKFDLEIGTLS CCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCCCCEEEECCEEEEEEHHHH KAFGVMGGVIAGSSTVIEWIRQKARPFLFSSAVTAADTAACLAAVDLLEEGTELVERLWE HHHHHHHHHHCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NTRYFKEGMRGAGFDIGASVTPITPVMIGDATLAQNFSRMLFDSDPGIFAMPIGYPTVPQ HHHHHHHCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCCC GKARIRVMISASHSREDLDLGLDIFTRIGKSVGVIG CCCEEEEEEECCCCCCHHHHHHHHHHHCCHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA