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The map label for this gene is sco

Identifier: 197116442

GI number: 197116442

Start: 51985

End: 52815

Strand: Direct

Name: sco

Synonym: Gbem_0042

Alternate gene names: NA

Gene position: 51985-52815 (Clockwise)

Preceding gene: 197116435

Following gene: 197116443

Centisome position: 1.13

GC content: 62.09

Gene sequence:

>831_bases
ATGGGTTTCATAAGGCGGTGGGGAGCGTGGGTGCCGGTTTTGGTGCTGCTTTTTTGGGGCACCGCAGCGGCGCATGTGGA
AGGGCCCCAGCCGCTTAGCTCCTTTTCCTCCGCCGGCGCCAATGCCCAACCGCTCGGGCTCACCGAGAGGCTGGGCGGCC
GTATACCTCTCGATTTGACCTTCCGGGACGAGACGGGGCGCGAACGGCGCCTGTCGGAACTCATCACCGGGCCAACCATC
ATCCTTCCCGTCTATTATTCATGCACCAACGTTTGCAACTATATGCAGGAAGGTTTGGCCAGGGTGCTCCCGGAGATCAA
GCTGGTCCCGGGAAAGGACTACCGGGTCCTGTCGTTGAGCTTCGACGAGCGCGAGACGCCGGAGCGGGCGGCACGCTCCA
AGCGGATGTACGAGACGGTGATGCGCGGGAAATTCCCCGCCGGCAACTGGACCTTCCTGACCGGCGACGCGGCGAGCATC
CACAAGCTCACCGATGCGGCCGGATTCCAGTTCCGGCGCCAGGGGAACGATTTCGTGCATCCAGTGGCGAGCTTCGTGGT
GGCTGGCGACGGCATGATCGTCCGTTACCTCTACGGCACCCAATTCCTGGCCAAGGACGTCACCCTTGCCCTGATCGAGG
CTCGCCAGGGGAGGGTCGGCGCCACCATCAGCAAGATGGTGAGTTACTGCTTCAGCTTCGATCCCAAGAGCAAAAGCTAC
GAATTCAACCTGTTGCGGGTGAGCGCCACGGTGATCATCGCCTGCGTGCTCGCATTCGCCGTCTTCCTCGTTTTCGGAGG
CAAAAAACCGCCGGCGGGTAAAGGGCAGTAA

Upstream 100 bases:

>100_bases
AGCGCAGGTCTGCATTTTTTGCTCCTGCAATGGACATGCTGCAACTTTCCATTACAATGAGCACTTGTCTTTTAATGATC
TTGGCAAGGCGGGATGACAC

Downstream 100 bases:

>100_bases
AGGGAATAACAGCGACAAGATCACTGGCGCCTGTGACAGGGTGCCGGTTCGTTCGGAGGGAAAATGAGTCAAGATACGGC
AATGGCGCAGGGCGGTTTCT

Product: cytochrome c oxidase synthesis (SCO) factor

Products: NA

Alternate protein names: SCO1/SenC Family Protein; SCO1/SenC/PrrC Family Protein; SenC/PrrC; Cytochrome C Oxidase Synthesis Factor; SenC/PrrC-Like; Respiratory System Biogenesis Protein

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MGFIRRWGAWVPVLVLLFWGTAAAHVEGPQPLSSFSSAGANAQPLGLTERLGGRIPLDLTFRDETGRERRLSELITGPTI
ILPVYYSCTNVCNYMQEGLARVLPEIKLVPGKDYRVLSLSFDERETPERAARSKRMYETVMRGKFPAGNWTFLTGDAASI
HKLTDAAGFQFRRQGNDFVHPVASFVVAGDGMIVRYLYGTQFLAKDVTLALIEARQGRVGATISKMVSYCFSFDPKSKSY
EFNLLRVSATVIIACVLAFAVFLVFGGKKPPAGKGQ

Sequences:

>Translated_276_residues
MGFIRRWGAWVPVLVLLFWGTAAAHVEGPQPLSSFSSAGANAQPLGLTERLGGRIPLDLTFRDETGRERRLSELITGPTI
ILPVYYSCTNVCNYMQEGLARVLPEIKLVPGKDYRVLSLSFDERETPERAARSKRMYETVMRGKFPAGNWTFLTGDAASI
HKLTDAAGFQFRRQGNDFVHPVASFVVAGDGMIVRYLYGTQFLAKDVTLALIEARQGRVGATISKMVSYCFSFDPKSKSY
EFNLLRVSATVIIACVLAFAVFLVFGGKKPPAGKGQ
>Mature_275_residues
GFIRRWGAWVPVLVLLFWGTAAAHVEGPQPLSSFSSAGANAQPLGLTERLGGRIPLDLTFRDETGRERRLSELITGPTII
LPVYYSCTNVCNYMQEGLARVLPEIKLVPGKDYRVLSLSFDERETPERAARSKRMYETVMRGKFPAGNWTFLTGDAASIH
KLTDAAGFQFRRQGNDFVHPVASFVVAGDGMIVRYLYGTQFLAKDVTLALIEARQGRVGATISKMVSYCFSFDPKSKSYE
FNLLRVSATVIIACVLAFAVFLVFGGKKPPAGKGQ

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30429; Mature: 30297

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFIRRWGAWVPVLVLLFWGTAAAHVEGPQPLSSFSSAGANAQPLGLTERLGGRIPLDLT
CCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCEEEE
FRDETGRERRLSELITGPTIILPVYYSCTNVCNYMQEGLARVLPEIKLVPGKDYRVLSLS
ECCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEE
FDERETPERAARSKRMYETVMRGKFPAGNWTFLTGDAASIHKLTDAAGFQFRRQGNDFVH
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCHHHHCCCHHHH
PVASFVVAGDGMIVRYLYGTQFLAKDVTLALIEARQGRVGATISKMVSYCFSFDPKSKSY
HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCE
EFNLLRVSATVIIACVLAFAVFLVFGGKKPPAGKGQ
EEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GFIRRWGAWVPVLVLLFWGTAAAHVEGPQPLSSFSSAGANAQPLGLTERLGGRIPLDLT
CCHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCCCEEEE
FRDETGRERRLSELITGPTIILPVYYSCTNVCNYMQEGLARVLPEIKLVPGKDYRVLSLS
ECCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEE
FDERETPERAARSKRMYETVMRGKFPAGNWTFLTGDAASIHKLTDAAGFQFRRQGNDFVH
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCHHHHCCCHHHH
PVASFVVAGDGMIVRYLYGTQFLAKDVTLALIEARQGRVGATISKMVSYCFSFDPKSKSY
HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCE
EFNLLRVSATVIIACVLAFAVFLVFGGKKPPAGKGQ
EEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA