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The map label for this gene is ycaK [C]

Identifier: 197106254

GI number: 197106254

Start: 3205267

End: 3205860

Strand: Direct

Name: ycaK [C]

Synonym: PHZ_c2793

Alternate gene names: 197106254

Gene position: 3205267-3205860 (Clockwise)

Preceding gene: 197106253

Following gene: 197106259

Centisome position: 80.21

GC content: 70.88

Gene sequence:

>594_bases
ATGAAGCACGCCGTCATCTTCGCGCACCCGAAGCCCGACAGCTTCACCGCGACGATCGCCCAGACCTATGCGCAGGCCGC
GCGCGACCTCGGCCACGAGGTCGTGGTGCGCGATCTCTACGGCCTGGGGTTCGACCCCTGCCTGAAGGCGGCCGAGCTGC
CGGGGCCGGGCGGCTACGCGCCCGCCGCGGACGTGAAGGCCGAGCGGGCGGTGCTGCAGGACGTGGACGTCTTCGCCTTC
GTCTATCCGCTCTGGTTCAACGCCCCGCCCGCGATCCTGAAGGGCTATGTGGACCGGGTGCTCTCGATGGGCTTCGGCTA
CGAGCCCGGACCGATGGGGGTGGAGTCCCGCCTGGACGGGCGCAGGCTGATCAGCTTCTCGTCCTCGGGCGCCCCCGAGG
ACTGGGTGCGCGACACCGGCGCCCTGAGCGCGCTCTCCACGCTCTTCGACCGGCACCTGGCCGGCGTCTGCGGCCTGATC
GTGGTCGACCACGTCCACTTCGGCGAGGTGGTCCCGAACCTCACCGAGGAATGGGTGGAGACCCACCGGGCCAAGGTCCG
CGAGACCGTGCGGGCGCAGTTCGGGCAGAGCTAG

Upstream 100 bases:

>100_bases
GCTCTACGTCGCCCCGGAAGAGCGCGTCCGCATCTGGTGATCTTGATCAAGGCGGGCTTCCGGGCGTTCTGATGTGAAGG
AACGCGTGGAGGCCCGCCCG

Downstream 100 bases:

>100_bases
GGCTTCAGCACCGCCGCGCCGGTGAAGGCGCCGGCCCGCAGGTCCTCCAGCGCCAGGTTCGCGTCCTTAAGGGCGTAGGT
CCGCACGTGCGGCCGCACGC

Product: NAD(P)H dehydrogenase, quinone family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MKHAVIFAHPKPDSFTATIAQTYAQAARDLGHEVVVRDLYGLGFDPCLKAAELPGPGGYAPAADVKAERAVLQDVDVFAF
VYPLWFNAPPAILKGYVDRVLSMGFGYEPGPMGVESRLDGRRLISFSSSGAPEDWVRDTGALSALSTLFDRHLAGVCGLI
VVDHVHFGEVVPNLTEEWVETHRAKVRETVRAQFGQS

Sequences:

>Translated_197_residues
MKHAVIFAHPKPDSFTATIAQTYAQAARDLGHEVVVRDLYGLGFDPCLKAAELPGPGGYAPAADVKAERAVLQDVDVFAF
VYPLWFNAPPAILKGYVDRVLSMGFGYEPGPMGVESRLDGRRLISFSSSGAPEDWVRDTGALSALSTLFDRHLAGVCGLI
VVDHVHFGEVVPNLTEEWVETHRAKVRETVRAQFGQS
>Mature_197_residues
MKHAVIFAHPKPDSFTATIAQTYAQAARDLGHEVVVRDLYGLGFDPCLKAAELPGPGGYAPAADVKAERAVLQDVDVFAF
VYPLWFNAPPAILKGYVDRVLSMGFGYEPGPMGVESRLDGRRLISFSSSGAPEDWVRDTGALSALSTLFDRHLAGVCGLI
VVDHVHFGEVVPNLTEEWVETHRAKVRETVRAQFGQS

Specific function: Unknown

COG id: COG2249

COG function: function code R; Putative NADPH-quinone reductase (modulator of drug activity B)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NAD(P)H dehydrogenase (quinone) family [H]

Homologues:

Organism=Escherichia coli, GI1787129, Length=110, Percent_Identity=35.4545454545455, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003680 [H]

Pfam domain/function: PF02525 Flavodoxin_2 [H]

EC number: 1.6.99.- [C]

Molecular weight: Translated: 21438; Mature: 21438

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHAVIFAHPKPDSFTATIAQTYAQAARDLGHEVVVRDLYGLGFDPCLKAAELPGPGGYA
CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCC
PAADVKAERAVLQDVDVFAFVYPLWFNAPPAILKGYVDRVLSMGFGYEPGPMGVESRLDG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCC
RRLISFSSSGAPEDWVRDTGALSALSTLFDRHLAGVCGLIVVDHVHFGEVVPNLTEEWVE
HHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THRAKVRETVRAQFGQS
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKHAVIFAHPKPDSFTATIAQTYAQAARDLGHEVVVRDLYGLGFDPCLKAAELPGPGGYA
CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCC
PAADVKAERAVLQDVDVFAFVYPLWFNAPPAILKGYVDRVLSMGFGYEPGPMGVESRLDG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCC
RRLISFSSSGAPEDWVRDTGALSALSTLFDRHLAGVCGLIVVDHVHFGEVVPNLTEEWVE
HHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THRAKVRETVRAQFGQS
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]