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The map label for this gene is atoS [C]

Identifier: 197106120

GI number: 197106120

Start: 3049387

End: 3051774

Strand: Direct

Name: atoS [C]

Synonym: PHZ_c2659

Alternate gene names: 197106120

Gene position: 3049387-3051774 (Clockwise)

Preceding gene: 197106109

Following gene: 197106121

Centisome position: 76.31

GC content: 72.15

Gene sequence:

>2388_bases
ATGAAGGCCGCGACCCAACCTCCCGCCCAGGACCGCGGCCTAGAGCAGTTGATCGAGTCGATCTCCGATCACGCGATCTA
CATGCTCGATCCCGATGGCCGGGTGGTCACCTGGAACAGCGGCGCCCAGCGGCTGAAGGGCTACGCGCGCGAGGAGATCG
AGGGCCAGCCCTTCGCCCGCTTCTTCTCGGTCGAGGACCGCCGCGCGGGCGTGCCCGAGCAGCTGCTGGCCGAGGCCGCC
GAGAAGGGCAAGGTCGAGACCGAGGGCTGGCGCGTCCGCAAGGACGGCGGCCGCTTCTGGGCCCAGGGCGCCCTGCACGC
CGTCCGGGCCGAGAACGGGGCGCTGGTCGGCTTCGCCAAGATCACCCGCGACATGACCGCGGACCGGGCCGCGCGCGACG
CCCTGATCGAGAGCGAGCGCCGCTTCCGGCTGATGGTCGAGAACGTCATCGACTACGCCATCTTCATGCTGGACGTGAAC
GGCACGGTGGCGAACTGGAACGCCGGCGCCCAGCGCATCAAGGGCTACACCGCCGACGAGGTGGTGGGCTCCCACTTCAG
CCGCTTCTACACGCCCGAGGACCGTCGGGCCGGCCTGCCCGCCCGCGCCCTCGAGACCGCCCGCACCGAGGGCCGGTTCG
AGGCCGAGGGCTGGCGCTTGCGCAAGGACGGCGGCCGCTTCTGGGCCCTCGTCGTCATCGACCCGATCTGGGACGAGGAG
CGGCGGCTCATCGGCTTCGCCAAGATCACCCGCGACATCAGCCAGCGGAAGGCGGCCGAGGACGCCCTGGCCGAGAGCGA
GCGCCAGTTCCGCATGCTGGTGGCCGGGGTCGTGGACTACGCGCTCTACATGCTGGATCCGAACGGCGTGATCTCCAGCT
GGAACGCCGGCGCCGAGCACATCAAGGGCTACCAGGCCGACGACATCGTCGGGCAGCACTTCAGCCGCTTCTACACCGAG
GCCGACCGCGCCGCCGGGGTGCCCGCCCGGGCCCTGCAGACGGCCGGCGAACAGGGCCGCTACGAGGCCGAGGGCTGGCG
CGTGCGCAAGGACGGCAGCCTGTTCTGGGCCAGCGTGGTGATCGACGCGATCCGCGACGAGGACGGCCGGCTGGTCGGCT
TCGCCAAGATCACCCGCGACGTCACCGAGAAGCGCAACGCCCAGCTCGAGCTGCAGCGGGCGCACGACCAGCTCGCCCAG
GCCCAGAAGATGGAGGCGCTGGGCAAGCTCACCGGTGGGGTCGCCCACGACTTCAACAACCTGCTGATGGTGGTCAGCGG
CCAGGCCCAGATGCTGCGCAACCGGGTGGGCGACGACCCCCGCGCCCTGCGCGCGCTGGACGCCATCGAGACGTCGGCCA
AGCGGGGCGAGGACCTGACCCGGCACCTGCTGGCCTTCTCGCGGCGCCAGCGGCTGCAGCCGGTGCCCGTGGCCCTGGCC
GACCGGGTCGAGGACCTGAAGGACCTGATCGCCGCCAGCCTGCCGCCCACGGTGCGGCTGGTGATCGACCTGTCCTCCGA
GCTCTGGCCGGTGAAGGTGGACCCCAGCGAGCTGGAGCTGTCGCTGCTGAACCTGGCCGTGAACGCCCGCGACGCCATGC
CGGGCGGCGGCGTGCTGGCGATCACCGCAGAGAACGTGAAGCTGACGCGCTCGGCCGGGCAGACCCTGGCGGGCGACTTC
GTGGCGGTGACCGTCAGCGACACGGGCGTCGGCATCCCCGACGACATCCTGCCCCGGATCTTCGACCCGTTCTTCACCAC
CAAGGAAGTCAGCAAGGGCACCGGCCTTGGTCTCTCGCAGGTGTACGGCTTCGCCCAGCAGTCGGGCGGCGAGGTGCAGG
TCAGGAGCGAGCTGGGCCGGGGCACGAGCTTCACGTTCTACCTGCCGCGCACCTCGGCGAAGGTCGCCCGGCCCGTCGAG
GAGGCCGCGGAGCCGGTCGCCCGCAGCGCCCGGATCCTGGTGGTCGAGGACAACCCGGAGGTGGCCGAGGTGGCCGCCGC
GATGCTGGAGCAACTGGGCCACACCGTGCGGGTCGTGGGCGGCGCGGCGGCGGCGATGAGCGCCCTGCACGAGCACGAGA
CCCCCGACCTCGTCTTCTCCGACATCGTCATGGCCGGCGAGATCGACGGCCTGGGCCTGGCCCGGCGCGTCCGGGAGGAG
GCGCCCTCGGTTCCGGTGCTGCTGGCCACCGGCTACAGCCAGGCCGCCGAACAGCTCGGCGACGAGTTCCCGATCCTGCG
CAAGCCCTACAAGCTGGGCGAGCTCAGCCGGGCCGTCGGCGTCCTGCTGGCGCGCAGCCAGGCCGCCGACGACAAGCTGA
TCAGCCTGCAGAGCGCGCGCCGCGCCCGGCAGGCCCGGCGCGACGGCGACCCGCCGCCGCGCAGCTAG

Upstream 100 bases:

>100_bases
GCCGCGCTCCGGTTGTCAATTCGGCCCACCGTGAATTGCATTCGGCGCCCCCGTGGGGTAGCCGTCGCCGCCGGCGGGGC
GGCGCCGAGAGCACGAGTTC

Downstream 100 bases:

>100_bases
ACCGGGTTGCGGCCTAGTTCCGGCCTAGTTCCGAGCCGTCTGCAGGGTCACCGCGCCGCGGTTGCAGGCGCGGATCTGGC
CGGCCGTCAGCTCGCGGCCG

Product: FOG: PAS/PAC domain protein

Products: NA

Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]

Number of amino acids: Translated: 795; Mature: 795

Protein sequence:

>795_residues
MKAATQPPAQDRGLEQLIESISDHAIYMLDPDGRVVTWNSGAQRLKGYAREEIEGQPFARFFSVEDRRAGVPEQLLAEAA
EKGKVETEGWRVRKDGGRFWAQGALHAVRAENGALVGFAKITRDMTADRAARDALIESERRFRLMVENVIDYAIFMLDVN
GTVANWNAGAQRIKGYTADEVVGSHFSRFYTPEDRRAGLPARALETARTEGRFEAEGWRLRKDGGRFWALVVIDPIWDEE
RRLIGFAKITRDISQRKAAEDALAESERQFRMLVAGVVDYALYMLDPNGVISSWNAGAEHIKGYQADDIVGQHFSRFYTE
ADRAAGVPARALQTAGEQGRYEAEGWRVRKDGSLFWASVVIDAIRDEDGRLVGFAKITRDVTEKRNAQLELQRAHDQLAQ
AQKMEALGKLTGGVAHDFNNLLMVVSGQAQMLRNRVGDDPRALRALDAIETSAKRGEDLTRHLLAFSRRQRLQPVPVALA
DRVEDLKDLIAASLPPTVRLVIDLSSELWPVKVDPSELELSLLNLAVNARDAMPGGGVLAITAENVKLTRSAGQTLAGDF
VAVTVSDTGVGIPDDILPRIFDPFFTTKEVSKGTGLGLSQVYGFAQQSGGEVQVRSELGRGTSFTFYLPRTSAKVARPVE
EAAEPVARSARILVVEDNPEVAEVAAAMLEQLGHTVRVVGGAAAAMSALHEHETPDLVFSDIVMAGEIDGLGLARRVREE
APSVPVLLATGYSQAAEQLGDEFPILRKPYKLGELSRAVGVLLARSQAADDKLISLQSARRARQARRDGDPPPRS

Sequences:

>Translated_795_residues
MKAATQPPAQDRGLEQLIESISDHAIYMLDPDGRVVTWNSGAQRLKGYAREEIEGQPFARFFSVEDRRAGVPEQLLAEAA
EKGKVETEGWRVRKDGGRFWAQGALHAVRAENGALVGFAKITRDMTADRAARDALIESERRFRLMVENVIDYAIFMLDVN
GTVANWNAGAQRIKGYTADEVVGSHFSRFYTPEDRRAGLPARALETARTEGRFEAEGWRLRKDGGRFWALVVIDPIWDEE
RRLIGFAKITRDISQRKAAEDALAESERQFRMLVAGVVDYALYMLDPNGVISSWNAGAEHIKGYQADDIVGQHFSRFYTE
ADRAAGVPARALQTAGEQGRYEAEGWRVRKDGSLFWASVVIDAIRDEDGRLVGFAKITRDVTEKRNAQLELQRAHDQLAQ
AQKMEALGKLTGGVAHDFNNLLMVVSGQAQMLRNRVGDDPRALRALDAIETSAKRGEDLTRHLLAFSRRQRLQPVPVALA
DRVEDLKDLIAASLPPTVRLVIDLSSELWPVKVDPSELELSLLNLAVNARDAMPGGGVLAITAENVKLTRSAGQTLAGDF
VAVTVSDTGVGIPDDILPRIFDPFFTTKEVSKGTGLGLSQVYGFAQQSGGEVQVRSELGRGTSFTFYLPRTSAKVARPVE
EAAEPVARSARILVVEDNPEVAEVAAAMLEQLGHTVRVVGGAAAAMSALHEHETPDLVFSDIVMAGEIDGLGLARRVREE
APSVPVLLATGYSQAAEQLGDEFPILRKPYKLGELSRAVGVLLARSQAADDKLISLQSARRARQARRDGDPPPRS
>Mature_795_residues
MKAATQPPAQDRGLEQLIESISDHAIYMLDPDGRVVTWNSGAQRLKGYAREEIEGQPFARFFSVEDRRAGVPEQLLAEAA
EKGKVETEGWRVRKDGGRFWAQGALHAVRAENGALVGFAKITRDMTADRAARDALIESERRFRLMVENVIDYAIFMLDVN
GTVANWNAGAQRIKGYTADEVVGSHFSRFYTPEDRRAGLPARALETARTEGRFEAEGWRLRKDGGRFWALVVIDPIWDEE
RRLIGFAKITRDISQRKAAEDALAESERQFRMLVAGVVDYALYMLDPNGVISSWNAGAEHIKGYQADDIVGQHFSRFYTE
ADRAAGVPARALQTAGEQGRYEAEGWRVRKDGSLFWASVVIDAIRDEDGRLVGFAKITRDVTEKRNAQLELQRAHDQLAQ
AQKMEALGKLTGGVAHDFNNLLMVVSGQAQMLRNRVGDDPRALRALDAIETSAKRGEDLTRHLLAFSRRQRLQPVPVALA
DRVEDLKDLIAASLPPTVRLVIDLSSELWPVKVDPSELELSLLNLAVNARDAMPGGGVLAITAENVKLTRSAGQTLAGDF
VAVTVSDTGVGIPDDILPRIFDPFFTTKEVSKGTGLGLSQVYGFAQQSGGEVQVRSELGRGTSFTFYLPRTSAKVARPVE
EAAEPVARSARILVVEDNPEVAEVAAAMLEQLGHTVRVVGGAAAAMSALHEHETPDLVFSDIVMAGEIDGLGLARRVREE
APSVPVLLATGYSQAAEQLGDEFPILRKPYKLGELSRAVGVLLARSQAADDKLISLQSARRARQARRDGDPPPRS

Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=382, Percent_Identity=29.3193717277487, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1790436, Length=246, Percent_Identity=32.9268292682927, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI48994928, Length=549, Percent_Identity=23.8615664845173, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI87081816, Length=173, Percent_Identity=34.1040462427746, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI1790300, Length=243, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI145693157, Length=290, Percent_Identity=26.551724137931, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI1788713, Length=240, Percent_Identity=29.1666666666667, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081921, Length=260, Percent_Identity=25, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1790861, Length=296, Percent_Identity=27.3648648648649, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR011006
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 87169; Mature: 87169

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN ; PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAATQPPAQDRGLEQLIESISDHAIYMLDPDGRVVTWNSGAQRLKGYAREEIEGQPFAR
CCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCHHHHHHHHHHHCCCCCHHH
FFSVEDRRAGVPEQLLAEAAEKGKVETEGWRVRKDGGRFWAQGALHAVRAENGALVGFAK
HCCCCHHCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHEECCCCCEEEHHH
ITRDMTADRAARDALIESERRFRLMVENVIDYAIFMLDVNGTVANWNAGAQRIKGYTADE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEECCCCHHHHHCCCCHHH
VVGSHFSRFYTPEDRRAGLPARALETARTEGRFEAEGWRLRKDGGRFWALVVIDPIWDEE
HHHHHHHHCCCCCHHHCCCCHHHHHHHHCCCCEECCCCEEEECCCCEEEEEEEECCCCCC
RRLIGFAKITRDISQRKAAEDALAESERQFRMLVAGVVDYALYMLDPNGVISSWNAGAEH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHH
IKGYQADDIVGQHFSRFYTEADRAAGVPARALQTAGEQGRYEAEGWRVRKDGSLFWASVV
HCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHH
IDAIRDEDGRLVGFAKITRDVTEKRNAQLELQRAHDQLAQAQKMEALGKLTGGVAHDFNN
HHHHHCCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCC
LLMVVSGQAQMLRNRVGDDPRALRALDAIETSAKRGEDLTRHLLAFSRRQRLQPVPVALA
EEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHH
DRVEDLKDLIAASLPPTVRLVIDLSSELWPVKVDPSELELSLLNLAVNARDAMPGGGVLA
HHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEECHHHHHHHHHHHEEECCCCCCCCCEEE
ITAENVKLTRSAGQTLAGDFVAVTVSDTGVGIPDDILPRIFDPFFTTKEVSKGTGLGLSQ
EEECCEEEEHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCHHHHCCCCCCCHHH
VYGFAQQSGGEVQVRSELGRGTSFTFYLPRTSAKVARPVEEAAEPVARSARILVVEDNPE
HHHHHHCCCCCEEEHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
VAEVAAAMLEQLGHTVRVVGGAAAAMSALHEHETPDLVFSDIVMAGEIDGLGLARRVREE
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
APSVPVLLATGYSQAAEQLGDEFPILRKPYKLGELSRAVGVLLARSQAADDKLISLQSAR
CCCCCEEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
RARQARRDGDPPPRS
HHHHHHHCCCCCCCC
>Mature Secondary Structure
MKAATQPPAQDRGLEQLIESISDHAIYMLDPDGRVVTWNSGAQRLKGYAREEIEGQPFAR
CCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCHHHHHHHHHHHCCCCCHHH
FFSVEDRRAGVPEQLLAEAAEKGKVETEGWRVRKDGGRFWAQGALHAVRAENGALVGFAK
HCCCCHHCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHEECCCCCEEEHHH
ITRDMTADRAARDALIESERRFRLMVENVIDYAIFMLDVNGTVANWNAGAQRIKGYTADE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEECCCCHHHHHCCCCHHH
VVGSHFSRFYTPEDRRAGLPARALETARTEGRFEAEGWRLRKDGGRFWALVVIDPIWDEE
HHHHHHHHCCCCCHHHCCCCHHHHHHHHCCCCEECCCCEEEECCCCEEEEEEEECCCCCC
RRLIGFAKITRDISQRKAAEDALAESERQFRMLVAGVVDYALYMLDPNGVISSWNAGAEH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHH
IKGYQADDIVGQHFSRFYTEADRAAGVPARALQTAGEQGRYEAEGWRVRKDGSLFWASVV
HCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHH
IDAIRDEDGRLVGFAKITRDVTEKRNAQLELQRAHDQLAQAQKMEALGKLTGGVAHDFNN
HHHHHCCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCC
LLMVVSGQAQMLRNRVGDDPRALRALDAIETSAKRGEDLTRHLLAFSRRQRLQPVPVALA
EEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHH
DRVEDLKDLIAASLPPTVRLVIDLSSELWPVKVDPSELELSLLNLAVNARDAMPGGGVLA
HHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEECHHHHHHHHHHHEEECCCCCCCCCEEE
ITAENVKLTRSAGQTLAGDFVAVTVSDTGVGIPDDILPRIFDPFFTTKEVSKGTGLGLSQ
EEECCEEEEHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCHHHHCCCCCCCHHH
VYGFAQQSGGEVQVRSELGRGTSFTFYLPRTSAKVARPVEEAAEPVARSARILVVEDNPE
HHHHHHCCCCCEEEHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
VAEVAAAMLEQLGHTVRVVGGAAAAMSALHEHETPDLVFSDIVMAGEIDGLGLARRVREE
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
APSVPVLLATGYSQAAEQLGDEFPILRKPYKLGELSRAVGVLLARSQAADDKLISLQSAR
CCCCCEEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
RARQARRDGDPPPRS
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA