| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is ptpA [H]
Identifier: 197106088
GI number: 197106088
Start: 3015360
End: 3017579
Strand: Direct
Name: ptpA [H]
Synonym: PHZ_c2627
Alternate gene names: 197106088
Gene position: 3015360-3017579 (Clockwise)
Preceding gene: 197106087
Following gene: 197106090
Centisome position: 75.45
GC content: 71.71
Gene sequence:
>2220_bases ATGAAGCTCCTGATCGCCGCCCTCGCGGCCGCCGTGCTCGCCGCGCCCGCGGCGCACGCCGAACAGCTCCCGCCCCCCGT TCCGGCCAAGCGGGTCTTCGAAAGCCCCGACCTGAACGGCCCCCGCGCCCGCGGCGTGAAGCTCTCGCCGGACGGGCGGT CGGTGACCTACATCAAGGTCCGCGCCGACGACCTCACGGTCACCGACCTGTGGATCGCCGACGTGGCCGGCGGCGAGCCG CGGATGCTGATCGACGGCAAGCGGCTGGCGCCCGAGGCGCGCGAGCTGTCCGAGGCCGAAAAGGCGCGGCGCGAGCGGGC CGGCGTCGCGACCCGCGGGGTGGTGGACTACGAGTGGGACAGCCAGGGCCGGCTGATCCTGGCCCCCGTCGAGGGCGACC TCTACATCTATGACCTCGGTTCGGGCCAGGTCCGCCGTCTGACCCGCACGCCGGGCGACGAGATCGACGCCAAGGTCTCG CCGAAGGGCTCCTTCGTCTCCTACGTCCGCGACGACGATCTCTATGTCACGCCCGCGGCCGGCGGCGCCGAGCGCGCCCT GACCCAGGGCGGCACGGAGCTGAAGAGCTGGGGGACCGCCGAGTTCATCGCGCAGGAGGAGATGGACCGCCACACCGGCT ACTGGTGGAGCCCGGACGAGGCGCGCATCGCCGTCGCCCACGTCGACCAGACGGGCGTCGACATCGTGGAGCGGCCCGAG GTGGGCGCGACGGGCGCCAAGGTCGTGGCCCAACGCTATCCGCGGGTCGGCCGGCCGAACGCGGTCGTCACGCTCTATGT CCAGGACGTCGCCACCGGCGCGCGCACGAAGGTCGACCTGGGCGACGATCCGGACATCTACCTCGCCCGCGTGGACTGGT CGAAGGACGGGCGCACGCTCTACGTCCAGCGCCAGAGCCGCGACCAGCGCCGGTTGGACCTGATCGCCGTCGACCCCGCC ACCGGCAAGGGCCGCGTGATCCTTTCCGAGACCAGCCCGCACTGGGTCGACATCACCGACGACTTCAAGCCGCTGTCCGA CGGGACCTTCCTGTGGTCATCCGAGAAATCGGGCTTCCGCCATCTCTACCTGCACCGCGCCGACGGCCGGTTGATCCGGC AGGTGACGAAGGGCGCCTGGCCCGTGGCCGAGCTCCGGGGGGTGGACGAGGCCCGCGGCGTGGCGATCTTCACCGCCAAC CGGGACCTGCCCATCGAGCGCCGCCTGTATGAGGTCTCGTACCGCGCGCCCGCCGAGCCCCGGGCGCTGACGCCCGCCGG CGGCTGGTGGAGTGCCGAGGTGGCCCGGGCCGGCGGCGCCTTCGTCGGCACGTTCGAAGCCCCGCAGACCCCGCCCCAGA CCGCGCTCTACCGCGCCGACGGGACTCGCGTGCGCTGGATCGAGGAGAACCGTCTGGCCGAGGGCCACCCTTTCCACCCC TACGCAGCGCGGCTGCGCACGCCCGAGTACGGGACCATCAAGGCCGCCGACGGCAGCCCCCTGTGGTGGTCGCTGCGCAC GCCGCCGGGATTCGACCCGGCGAAGAAGCATCCCGTGATCGTGCAGGTCTACGGCGGCCCCGGCAGCGCGCGGGTCACTC GCGGCTGGCAGAACCCCGAGGACCAGATCCTGCTGGACGCCGGCTACATCCTCTTCAAGCTGGACAACCGCGGCACGCCC AACCGGTCCACGGCCTTCAAGACCGCCATCGACCGCAAGCTCGGCCAGCTCGAGGTCGACGACCAGATCGCGGGGGCGCA GTTCCTGAAGACCCTGCCCTATGTCGATCCCGAGCGGATCGGCGTCACCGGCTGGTCCTACGGCGGCTACATGACCCTGC TGCTGCTCACCGCGCCGGACAGCCCGTTCAAGGCCGGCGTCGCGGGCGCCCCGGTCACCGACTGGACGCTCTACGACACC CACTACACAGAACGGTTCATGGGCACGCCCAAGGACAACCCCGAGGGCTACGAGAGGTCCGAGGTCGTCCGGCGGCTGGA CCGCCTGCCGGCCGGCTCGCTGCTGCTGATCCACGGCATGGCCGACGACAACGTGACCTTCGACCACGCCACGCGGGTGA TGTTCGACCTGCAGGCCCGGGGCGTCCCCTTCGAGACCATGGTCTATCCCGGCCTGCGCCATCGCGGCGGCTGGACGCCC ATGAACCGCCTGCACCGGGCCATGCAGACCCTGGAGTTCTTCGACCGCAAGCTCCGGTAG
Upstream 100 bases:
>100_bases ACCGGCACGTCACCGCCTGGATCGCCGCGCGGAAGCGTTAGCCCGGCGCAGAATCGCCCGCCGGATTGCCAAGCCTCGCG CCGCCCTGTTCAAAGGCGGC
Downstream 100 bases:
>100_bases GCCTTCTCCCCTACTTCGGCTTGCGGAACTTCATCGCGAACTGGTCGGTGCGGCCGCGGATCGAGGGATCGAACACCGAG GCCGTCAGCGGATCCTCGGG
Product: dipeptidyl peptidase IV
Products: NA
Alternate protein names: PTP; Prolyl tripeptidyl peptidase A [H]
Number of amino acids: Translated: 739; Mature: 739
Protein sequence:
>739_residues MKLLIAALAAAVLAAPAAHAEQLPPPVPAKRVFESPDLNGPRARGVKLSPDGRSVTYIKVRADDLTVTDLWIADVAGGEP RMLIDGKRLAPEARELSEAEKARRERAGVATRGVVDYEWDSQGRLILAPVEGDLYIYDLGSGQVRRLTRTPGDEIDAKVS PKGSFVSYVRDDDLYVTPAAGGAERALTQGGTELKSWGTAEFIAQEEMDRHTGYWWSPDEARIAVAHVDQTGVDIVERPE VGATGAKVVAQRYPRVGRPNAVVTLYVQDVATGARTKVDLGDDPDIYLARVDWSKDGRTLYVQRQSRDQRRLDLIAVDPA TGKGRVILSETSPHWVDITDDFKPLSDGTFLWSSEKSGFRHLYLHRADGRLIRQVTKGAWPVAELRGVDEARGVAIFTAN RDLPIERRLYEVSYRAPAEPRALTPAGGWWSAEVARAGGAFVGTFEAPQTPPQTALYRADGTRVRWIEENRLAEGHPFHP YAARLRTPEYGTIKAADGSPLWWSLRTPPGFDPAKKHPVIVQVYGGPGSARVTRGWQNPEDQILLDAGYILFKLDNRGTP NRSTAFKTAIDRKLGQLEVDDQIAGAQFLKTLPYVDPERIGVTGWSYGGYMTLLLLTAPDSPFKAGVAGAPVTDWTLYDT HYTERFMGTPKDNPEGYERSEVVRRLDRLPAGSLLLIHGMADDNVTFDHATRVMFDLQARGVPFETMVYPGLRHRGGWTP MNRLHRAMQTLEFFDRKLR
Sequences:
>Translated_739_residues MKLLIAALAAAVLAAPAAHAEQLPPPVPAKRVFESPDLNGPRARGVKLSPDGRSVTYIKVRADDLTVTDLWIADVAGGEP RMLIDGKRLAPEARELSEAEKARRERAGVATRGVVDYEWDSQGRLILAPVEGDLYIYDLGSGQVRRLTRTPGDEIDAKVS PKGSFVSYVRDDDLYVTPAAGGAERALTQGGTELKSWGTAEFIAQEEMDRHTGYWWSPDEARIAVAHVDQTGVDIVERPE VGATGAKVVAQRYPRVGRPNAVVTLYVQDVATGARTKVDLGDDPDIYLARVDWSKDGRTLYVQRQSRDQRRLDLIAVDPA TGKGRVILSETSPHWVDITDDFKPLSDGTFLWSSEKSGFRHLYLHRADGRLIRQVTKGAWPVAELRGVDEARGVAIFTAN RDLPIERRLYEVSYRAPAEPRALTPAGGWWSAEVARAGGAFVGTFEAPQTPPQTALYRADGTRVRWIEENRLAEGHPFHP YAARLRTPEYGTIKAADGSPLWWSLRTPPGFDPAKKHPVIVQVYGGPGSARVTRGWQNPEDQILLDAGYILFKLDNRGTP NRSTAFKTAIDRKLGQLEVDDQIAGAQFLKTLPYVDPERIGVTGWSYGGYMTLLLLTAPDSPFKAGVAGAPVTDWTLYDT HYTERFMGTPKDNPEGYERSEVVRRLDRLPAGSLLLIHGMADDNVTFDHATRVMFDLQARGVPFETMVYPGLRHRGGWTP MNRLHRAMQTLEFFDRKLR >Mature_739_residues MKLLIAALAAAVLAAPAAHAEQLPPPVPAKRVFESPDLNGPRARGVKLSPDGRSVTYIKVRADDLTVTDLWIADVAGGEP RMLIDGKRLAPEARELSEAEKARRERAGVATRGVVDYEWDSQGRLILAPVEGDLYIYDLGSGQVRRLTRTPGDEIDAKVS PKGSFVSYVRDDDLYVTPAAGGAERALTQGGTELKSWGTAEFIAQEEMDRHTGYWWSPDEARIAVAHVDQTGVDIVERPE VGATGAKVVAQRYPRVGRPNAVVTLYVQDVATGARTKVDLGDDPDIYLARVDWSKDGRTLYVQRQSRDQRRLDLIAVDPA TGKGRVILSETSPHWVDITDDFKPLSDGTFLWSSEKSGFRHLYLHRADGRLIRQVTKGAWPVAELRGVDEARGVAIFTAN RDLPIERRLYEVSYRAPAEPRALTPAGGWWSAEVARAGGAFVGTFEAPQTPPQTALYRADGTRVRWIEENRLAEGHPFHP YAARLRTPEYGTIKAADGSPLWWSLRTPPGFDPAKKHPVIVQVYGGPGSARVTRGWQNPEDQILLDAGYILFKLDNRGTP NRSTAFKTAIDRKLGQLEVDDQIAGAQFLKTLPYVDPERIGVTGWSYGGYMTLLLLTAPDSPFKAGVAGAPVTDWTLYDT HYTERFMGTPKDNPEGYERSEVVRRLDRLPAGSLLLIHGMADDNVTFDHATRVMFDLQARGVPFETMVYPGLRHRGGWTP MNRLHRAMQTLEFFDRKLR
Specific function: Serine proteinase. Releases tripeptides from the free amino terminus of proteins. Has a requirement for Pro in the P1 position, but is inactivated by Pro in the P1' position [H]
COG id: COG1506
COG function: function code E; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S9B family [H]
Homologues:
Organism=Homo sapiens, GI37577089, Length=745, Percent_Identity=27.9194630872483, Blast_Score=293, Evalue=4e-79, Organism=Homo sapiens, GI18450280, Length=745, Percent_Identity=27.9194630872483, Blast_Score=293, Evalue=5e-79, Organism=Homo sapiens, GI194394146, Length=772, Percent_Identity=27.8497409326425, Blast_Score=282, Evalue=8e-76, Organism=Homo sapiens, GI37577091, Length=744, Percent_Identity=25, Blast_Score=219, Evalue=6e-57, Organism=Homo sapiens, GI18765694, Length=618, Percent_Identity=26.6990291262136, Blast_Score=216, Evalue=5e-56, Organism=Homo sapiens, GI16933540, Length=627, Percent_Identity=27.2727272727273, Blast_Score=206, Evalue=6e-53, Organism=Homo sapiens, GI295842403, Length=605, Percent_Identity=26.2809917355372, Blast_Score=199, Evalue=7e-51, Organism=Homo sapiens, GI85787627, Length=604, Percent_Identity=25.9933774834437, Blast_Score=199, Evalue=7e-51, Organism=Homo sapiens, GI295849272, Length=604, Percent_Identity=25.9933774834437, Blast_Score=199, Evalue=7e-51, Organism=Homo sapiens, GI52426756, Length=605, Percent_Identity=26.2809917355372, Blast_Score=199, Evalue=7e-51, Organism=Homo sapiens, GI295842359, Length=605, Percent_Identity=26.2809917355372, Blast_Score=199, Evalue=7e-51, Organism=Homo sapiens, GI86792774, Length=611, Percent_Identity=24.7135842880524, Blast_Score=176, Evalue=5e-44, Organism=Homo sapiens, GI86792863, Length=611, Percent_Identity=24.7135842880524, Blast_Score=176, Evalue=7e-44, Organism=Homo sapiens, GI86792778, Length=611, Percent_Identity=24.7135842880524, Blast_Score=176, Evalue=8e-44, Organism=Homo sapiens, GI18450278, Length=531, Percent_Identity=24.6704331450094, Blast_Score=147, Evalue=4e-35, Organism=Caenorhabditis elegans, GI17508017, Length=653, Percent_Identity=28.1776416539051, Blast_Score=220, Evalue=2e-57, Organism=Caenorhabditis elegans, GI17508019, Length=653, Percent_Identity=28.1776416539051, Blast_Score=220, Evalue=2e-57, Organism=Caenorhabditis elegans, GI17564632, Length=598, Percent_Identity=27.0903010033445, Blast_Score=159, Evalue=7e-39, Organism=Caenorhabditis elegans, GI17564634, Length=598, Percent_Identity=27.0903010033445, Blast_Score=159, Evalue=7e-39, Organism=Caenorhabditis elegans, GI17550672, Length=229, Percent_Identity=33.1877729257642, Blast_Score=125, Evalue=8e-29, Organism=Caenorhabditis elegans, GI17552908, Length=207, Percent_Identity=28.0193236714976, Blast_Score=74, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6321817, Length=633, Percent_Identity=26.3823064770932, Blast_Score=195, Evalue=2e-50, Organism=Saccharomyces cerevisiae, GI6324793, Length=595, Percent_Identity=23.1932773109244, Blast_Score=172, Evalue=1e-43, Organism=Drosophila melanogaster, GI45550825, Length=744, Percent_Identity=29.0322580645161, Blast_Score=283, Evalue=4e-76, Organism=Drosophila melanogaster, GI45553511, Length=744, Percent_Identity=29.0322580645161, Blast_Score=283, Evalue=4e-76, Organism=Drosophila melanogaster, GI45551969, Length=744, Percent_Identity=29.0322580645161, Blast_Score=282, Evalue=5e-76, Organism=Drosophila melanogaster, GI24582032, Length=610, Percent_Identity=29.016393442623, Blast_Score=193, Evalue=4e-49, Organism=Drosophila melanogaster, GI221331178, Length=629, Percent_Identity=27.3449920508744, Blast_Score=179, Evalue=5e-45, Organism=Drosophila melanogaster, GI161083744, Length=629, Percent_Identity=27.3449920508744, Blast_Score=179, Evalue=8e-45, Organism=Drosophila melanogaster, GI17933704, Length=629, Percent_Identity=27.3449920508744, Blast_Score=179, Evalue=8e-45, Organism=Drosophila melanogaster, GI24582257, Length=216, Percent_Identity=36.5740740740741, Blast_Score=148, Evalue=1e-35, Organism=Drosophila melanogaster, GI221372266, Length=429, Percent_Identity=23.3100233100233, Blast_Score=96, Evalue=7e-20, Organism=Drosophila melanogaster, GI45551475, Length=429, Percent_Identity=23.3100233100233, Blast_Score=96, Evalue=8e-20, Organism=Drosophila melanogaster, GI221372263, Length=429, Percent_Identity=23.3100233100233, Blast_Score=96, Evalue=8e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001375 - InterPro: IPR002469 [H]
Pfam domain/function: PF00930 DPPIV_N; PF00326 Peptidase_S9 [H]
EC number: =3.4.14.12 [H]
Molecular weight: Translated: 81916; Mature: 81916
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLLIAALAAAVLAAPAAHAEQLPPPVPAKRVFESPDLNGPRARGVKLSPDGRSVTYIKV CHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHCCCCCCCCCCCCEEECCCCCEEEEEEE RADDLTVTDLWIADVAGGEPRMLIDGKRLAPEARELSEAEKARRERAGVATRGVVDYEWD EECCEEEEEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCEECCEEEEEEC SQGRLILAPVEGDLYIYDLGSGQVRRLTRTPGDEIDAKVSPKGSFVSYVRDDDLYVTPAA CCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCEEEEEECCCEEEEECC GGAERALTQGGTELKSWGTAEFIAQEEMDRHTGYWWSPDEARIAVAHVDQTGVDIVERPE CCHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEECCC VGATGAKVVAQRYPRVGRPNAVVTLYVQDVATGARTKVDLGDDPDIYLARVDWSKDGRTL CCCCHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCEEEEEEEECCCCCEE YVQRQSRDQRRLDLIAVDPATGKGRVILSETSPHWVDITDDFKPLSDGTFLWSSEKSGFR EEECCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCCCCEEEECCCCCCCE HLYLHRADGRLIRQVTKGAWPVAELRGVDEARGVAIFTANRDLPIERRLYEVSYRAPAEP EEEEECCCCHHHHHHHHCCCCHHHHCCCCHHCCEEEEECCCCCCHHHHEEEEECCCCCCC RALTPAGGWWSAEVARAGGAFVGTFEAPQTPPQTALYRADGTRVRWIEENRLAEGHPFHP CEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCH YAARLRTPEYGTIKAADGSPLWWSLRTPPGFDPAKKHPVIVQVYGGPGSARVTRGWQNPE HHHHCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCC DQILLDAGYILFKLDNRGTPNRSTAFKTAIDRKLGQLEVDDQIAGAQFLKTLPYVDPERI CCEEEECCEEEEEECCCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHCCCCCHHHE GVTGWSYGGYMTLLLLTAPDSPFKAGVAGAPVTDWTLYDTHYTERFMGTPKDNPEGYERS EEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCHH EVVRRLDRLPAGSLLLIHGMADDNVTFDHATRVMFDLQARGVPFETMVYPGLRHRGGWTP HHHHHHHHCCCCCEEEEEECCCCCCCHHHHEEEEEEEECCCCCCHHHCCCCCCCCCCCCH MNRLHRAMQTLEFFDRKLR HHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKLLIAALAAAVLAAPAAHAEQLPPPVPAKRVFESPDLNGPRARGVKLSPDGRSVTYIKV CHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHCCCCCCCCCCCCEEECCCCCEEEEEEE RADDLTVTDLWIADVAGGEPRMLIDGKRLAPEARELSEAEKARRERAGVATRGVVDYEWD EECCEEEEEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCEECCEEEEEEC SQGRLILAPVEGDLYIYDLGSGQVRRLTRTPGDEIDAKVSPKGSFVSYVRDDDLYVTPAA CCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCEEEEEECCCEEEEECC GGAERALTQGGTELKSWGTAEFIAQEEMDRHTGYWWSPDEARIAVAHVDQTGVDIVERPE CCHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEECCC VGATGAKVVAQRYPRVGRPNAVVTLYVQDVATGARTKVDLGDDPDIYLARVDWSKDGRTL CCCCHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCEEEEEEEECCCCCEE YVQRQSRDQRRLDLIAVDPATGKGRVILSETSPHWVDITDDFKPLSDGTFLWSSEKSGFR EEECCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCCCCEEEECCCCCCCE HLYLHRADGRLIRQVTKGAWPVAELRGVDEARGVAIFTANRDLPIERRLYEVSYRAPAEP EEEEECCCCHHHHHHHHCCCCHHHHCCCCHHCCEEEEECCCCCCHHHHEEEEECCCCCCC RALTPAGGWWSAEVARAGGAFVGTFEAPQTPPQTALYRADGTRVRWIEENRLAEGHPFHP CEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCH YAARLRTPEYGTIKAADGSPLWWSLRTPPGFDPAKKHPVIVQVYGGPGSARVTRGWQNPE HHHHCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCC DQILLDAGYILFKLDNRGTPNRSTAFKTAIDRKLGQLEVDDQIAGAQFLKTLPYVDPERI CCEEEECCEEEEEECCCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHCCCCCHHHE GVTGWSYGGYMTLLLLTAPDSPFKAGVAGAPVTDWTLYDTHYTERFMGTPKDNPEGYERS EEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCHH EVVRRLDRLPAGSLLLIHGMADDNVTFDHATRVMFDLQARGVPFETMVYPGLRHRGGWTP HHHHHHHHCCCCCEEEEEECCCCCCCHHHHEEEEEEEECCCCCCHHHCCCCCCCCCCCCH MNRLHRAMQTLEFFDRKLR HHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA