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The map label for this gene is 197106038

Identifier: 197106038

GI number: 197106038

Start: 2964387

End: 2965250

Strand: Reverse

Name: 197106038

Synonym: PHZ_c2577

Alternate gene names: NA

Gene position: 2965250-2964387 (Counterclockwise)

Preceding gene: 197106039

Following gene: 197106037

Centisome position: 74.2

GC content: 73.96

Gene sequence:

>864_bases
ATGGACGCCGTCCTCACCGACGCCTTCGAGGCCAGCCGGCCGCGGCTGAATCGGCTGGCCTACCGCATGCTGGGCTCGGT
CGCCGAGGCCGAGGACGCCGTGCAGGACGCCTGGCTGCGCTGGACGCGGGCCGGGGAGGGGATCGCCGATCCCGCCGCCT
GGCTCGTGCGCGCGACCACCCGCCTGTGCATCGACCGCCTGCGGGCGGCGAAGGCCGAGCGCGAGGCTTACCGCGGCCCC
TGGCTGCCCGAGCCGCTGATCGAGCCCCTGACCGAGGACCCCGTGGAGCGGGCCGAGGACGTCTCGGTGGCCTTCCTGCT
GGCGCTGGAGCGGCTCTCGCCGCTGGAGCGGGCGGTGTTCCTGCTGCACGACGTGTTCGAACAGGACTACGCCCAGGTCG
CCGAGACCCTCGGCCGCTCGGAAGCGGCCGTGCGCCAGCTCGCCAGCCGCGCGCGGGCCCACGTGCAGGACGCCAGGCCC
CGGTTCTCGGTGGACCACCAGAAGGCCGTGCGGCTGGCCGAGGCGTTCGCCCACGCCGCGCTCACCGCCGACGCGAGCGC
GCTCTCCTCGCTGCTGGCCGAGGACGCGATCCTCGTCAGCGACGGCGGCGGCAAGCGGACGGCGGCGCTTCGGGTGCTGG
TCGGCCGGGATGACGTGATGTCGCTGCTGCGCGGGGTCCGCTGGCGCTATCCGGCCTACTACGGCGCCGGCGCCTACGAG
ACGGTGCGGATCAACGGCTATCCGGGGCTGCTGCTGCGGCTGGAGGACGGGCCCCAGACGTTCGCCTTCCAGCCCGACGA
GGAGGGGCGGATCGCCGCCATCTACATCATGCGCAATCCGGAGAAGCTGGCGCATCTCCGCTAG

Upstream 100 bases:

>100_bases
CGCTCAAGTACGCCCTCGGCTACGGCAAGGCCTGTTCCCGCGTCACGGTCGGCGGCGAAGCCATCGCCCCGCGCCGGCTG
GCGGCGTAGGATCGCGGGCC

Downstream 100 bases:

>100_bases
CGACCGACTCGTCGCACCGTTTCGGCGCTATCATCCACAGGCGCGCGCGACTCATCCACAGGCCCTCGCCGCGCAAGGTG
GTAGCGGTTTCCCATGGTCG

Product: RNA polymerase sigma-70 factor, ECF subfamily

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigJ; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF-Sigma Factor; RNA Polymerase Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase ECF-Type Sigma Factor; Sigma Factor Sigma; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase; Sigma-70 Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; ECF Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; ECF-Family Protein RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MDAVLTDAFEASRPRLNRLAYRMLGSVAEAEDAVQDAWLRWTRAGEGIADPAAWLVRATTRLCIDRLRAAKAEREAYRGP
WLPEPLIEPLTEDPVERAEDVSVAFLLALERLSPLERAVFLLHDVFEQDYAQVAETLGRSEAAVRQLASRARAHVQDARP
RFSVDHQKAVRLAEAFAHAALTADASALSSLLAEDAILVSDGGGKRTAALRVLVGRDDVMSLLRGVRWRYPAYYGAGAYE
TVRINGYPGLLLRLEDGPQTFAFQPDEEGRIAAIYIMRNPEKLAHLR

Sequences:

>Translated_287_residues
MDAVLTDAFEASRPRLNRLAYRMLGSVAEAEDAVQDAWLRWTRAGEGIADPAAWLVRATTRLCIDRLRAAKAEREAYRGP
WLPEPLIEPLTEDPVERAEDVSVAFLLALERLSPLERAVFLLHDVFEQDYAQVAETLGRSEAAVRQLASRARAHVQDARP
RFSVDHQKAVRLAEAFAHAALTADASALSSLLAEDAILVSDGGGKRTAALRVLVGRDDVMSLLRGVRWRYPAYYGAGAYE
TVRINGYPGLLLRLEDGPQTFAFQPDEEGRIAAIYIMRNPEKLAHLR
>Mature_287_residues
MDAVLTDAFEASRPRLNRLAYRMLGSVAEAEDAVQDAWLRWTRAGEGIADPAAWLVRATTRLCIDRLRAAKAEREAYRGP
WLPEPLIEPLTEDPVERAEDVSVAFLLALERLSPLERAVFLLHDVFEQDYAQVAETLGRSEAAVRQLASRARAHVQDARP
RFSVDHQKAVRLAEAFAHAALTADASALSSLLAEDAILVSDGGGKRTAALRVLVGRDDVMSLLRGVRWRYPAYYGAGAYE
TVRINGYPGLLLRLEDGPQTFAFQPDEEGRIAAIYIMRNPEKLAHLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31873; Mature: 31873

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAVLTDAFEASRPRLNRLAYRMLGSVAEAEDAVQDAWLRWTRAGEGIADPAAWLVRATT
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
RLCIDRLRAAKAEREAYRGPWLPEPLIEPLTEDPVERAEDVSVAFLLALERLSPLERAVF
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHH
LLHDVFEQDYAQVAETLGRSEAAVRQLASRARAHVQDARPRFSVDHQKAVRLAEAFAHAA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LTADASALSSLLAEDAILVSDGGGKRTAALRVLVGRDDVMSLLRGVRWRYPAYYGAGAYE
HHHHHHHHHHHHHCCCEEEECCCCCEEHHEEEEECCHHHHHHHHHHHHCCCCEECCCCEE
TVRINGYPGLLLRLEDGPQTFAFQPDEEGRIAAIYIMRNPEKLAHLR
EEEECCCCEEEEEECCCCCEEEECCCCCCCEEEEEEEECHHHHHCCC
>Mature Secondary Structure
MDAVLTDAFEASRPRLNRLAYRMLGSVAEAEDAVQDAWLRWTRAGEGIADPAAWLVRATT
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
RLCIDRLRAAKAEREAYRGPWLPEPLIEPLTEDPVERAEDVSVAFLLALERLSPLERAVF
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHH
LLHDVFEQDYAQVAETLGRSEAAVRQLASRARAHVQDARPRFSVDHQKAVRLAEAFAHAA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LTADASALSSLLAEDAILVSDGGGKRTAALRVLVGRDDVMSLLRGVRWRYPAYYGAGAYE
HHHHHHHHHHHHHCCCEEEECCCCCEEHHEEEEECCHHHHHHHHHHHHCCCCEECCCCEE
TVRINGYPGLLLRLEDGPQTFAFQPDEEGRIAAIYIMRNPEKLAHLR
EEEECCCCEEEEEECCCCCEEEECCCCCCCEEEEEEEECHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA