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The map label for this gene is acdA [H]

Identifier: 197106019

GI number: 197106019

Start: 2939048

End: 2940280

Strand: Reverse

Name: acdA [H]

Synonym: PHZ_c2558

Alternate gene names: 197106019

Gene position: 2940280-2939048 (Counterclockwise)

Preceding gene: 197106022

Following gene: 197106017

Centisome position: 73.58

GC content: 69.42

Gene sequence:

>1233_bases
ATGGACTTCGACGACACGCCAGAGGAGGCGGCCTATCGCGCGAAGGTCCGGAGCTGGCTGAGGGAGAACGCCCCGGCCGG
CACGCGGGAGAGCCGGCTGCGCCGCAACGCCGGCGAGGACCTGGTGGCCGAGGCCAAGGCCTGGCAGGCGAAGAAGGCCG
ATGCCGGCTACGCCGGCATCCTGCGGCCGAAGGCCTGGGGCGGCGGCGGCGGCGGCCTGATGGAAGAGGTCATCTTCGGC
GAGGAGGAGGACGCTCTTGGCCTCTACTACGGCATCTTCACGATCGGCGTCGGCATGTGCGTGCCGACCCTCCTCGCGTA
CTCGGACGCCGAGACGAAAGAGCGCCTGGTGCGGCCGACCATTCGCGGCGAGAAGATCTGGTGCCAGCTCTTCTCGGAAC
CCGGCGGCGGGTCCGACCTCGCGGGGGTCAGGACCCGGGCCGAGCGCGACGGCGACGACTGGGTCGTGAGCGGCCAAAAG
ATCTGGACGTCCAATGCGCATATCGCCGACTACGGCATTCTCCTCGTGAGGACGGACCCGGCGGTTCCGAAGCACAAGGG
CATGACGATGTTCTGGATCGACATGCGCAATTCGCCCGGGCTCGAGATGCGGCGGATCCATCAGATTTCCGGCATGTCGG
AGTTCAACGAGGTGTTCTTCACCGACGTGCGGGTCCCCGACGCCCAGCGCATCGGAGAGGTGAACGACGGCTGGCGCGTT
TCGCTGGTCACGCTGATGAACGAGCGGCTCACGACCGGTTCGAGCCGCGGTCCGGACTGGCAGGAGCTGGTCGGCCTCGG
GCGGCGGACGCCGGCCGGGGATGCTCCGGCGATCGCGCACGGCGCGGTGCGGGAGCGGATCGCCGACTGGTACGTCAAGT
CGGAGGGTCTGCGGCTGACCCGCCTGCGTTCGATCACCGCCATCTCGCGCGGGGAGCAGCCGGGGCCGGAGGCCTCGATC
GCCAAGCTCGTGGCGGCGTCGCAGGCGCAGGACATCGCGATGGAGGCTGTCGAAACGCTGGATCAGTTCGGCATCATCGC
CGACCCGGAGATCGCCCCGCTGGGCGCCGCCTTCCAGCAGGCGCTGATGATGTCGCCGTCCCGGCGGATCGCCGGCGGGA
CGGACGAGATTCTGCGCAACATCATCGCCGAACGCGTGCTGGGGCTGCCCGGCGACATCCGCGTCGACAGGGATCTGCCG
TTCCGGGACATCCCCACGGGACGCCGGGACTGA

Upstream 100 bases:

>100_bases
CATGTTCAGCGGTCCTCCTCGCGCGCCATTCCATTGTGGCGCATTTATATCTAACCAGTATAACTATTTTGATATCCATG
GGAACGCCTGGGAGGGTGCG

Downstream 100 bases:

>100_bases
GCACCGCCGCTCAGCCGACGGCGGCCGCCGCCGCGGGCTGCTCGGCCCCGACGACGATCACCTTGGGGCCCGGCGGGTCC
GCGTAGAGGTCGGCGACGAG

Product: acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MDFDDTPEEAAYRAKVRSWLRENAPAGTRESRLRRNAGEDLVAEAKAWQAKKADAGYAGILRPKAWGGGGGGLMEEVIFG
EEEDALGLYYGIFTIGVGMCVPTLLAYSDAETKERLVRPTIRGEKIWCQLFSEPGGGSDLAGVRTRAERDGDDWVVSGQK
IWTSNAHIADYGILLVRTDPAVPKHKGMTMFWIDMRNSPGLEMRRIHQISGMSEFNEVFFTDVRVPDAQRIGEVNDGWRV
SLVTLMNERLTTGSSRGPDWQELVGLGRRTPAGDAPAIAHGAVRERIADWYVKSEGLRLTRLRSITAISRGEQPGPEASI
AKLVAASQAQDIAMEAVETLDQFGIIADPEIAPLGAAFQQALMMSPSRRIAGGTDEILRNIIAERVLGLPGDIRVDRDLP
FRDIPTGRRD

Sequences:

>Translated_410_residues
MDFDDTPEEAAYRAKVRSWLRENAPAGTRESRLRRNAGEDLVAEAKAWQAKKADAGYAGILRPKAWGGGGGGLMEEVIFG
EEEDALGLYYGIFTIGVGMCVPTLLAYSDAETKERLVRPTIRGEKIWCQLFSEPGGGSDLAGVRTRAERDGDDWVVSGQK
IWTSNAHIADYGILLVRTDPAVPKHKGMTMFWIDMRNSPGLEMRRIHQISGMSEFNEVFFTDVRVPDAQRIGEVNDGWRV
SLVTLMNERLTTGSSRGPDWQELVGLGRRTPAGDAPAIAHGAVRERIADWYVKSEGLRLTRLRSITAISRGEQPGPEASI
AKLVAASQAQDIAMEAVETLDQFGIIADPEIAPLGAAFQQALMMSPSRRIAGGTDEILRNIIAERVLGLPGDIRVDRDLP
FRDIPTGRRD
>Mature_410_residues
MDFDDTPEEAAYRAKVRSWLRENAPAGTRESRLRRNAGEDLVAEAKAWQAKKADAGYAGILRPKAWGGGGGGLMEEVIFG
EEEDALGLYYGIFTIGVGMCVPTLLAYSDAETKERLVRPTIRGEKIWCQLFSEPGGGSDLAGVRTRAERDGDDWVVSGQK
IWTSNAHIADYGILLVRTDPAVPKHKGMTMFWIDMRNSPGLEMRRIHQISGMSEFNEVFFTDVRVPDAQRIGEVNDGWRV
SLVTLMNERLTTGSSRGPDWQELVGLGRRTPAGDAPAIAHGAVRERIADWYVKSEGLRLTRLRSITAISRGEQPGPEASI
AKLVAASQAQDIAMEAVETLDQFGIIADPEIAPLGAAFQQALMMSPSRRIAGGTDEILRNIIAERVLGLPGDIRVDRDLP
FRDIPTGRRD

Specific function: Involved in the degradation of long-chain fatty acids [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=390, Percent_Identity=26.4102564102564, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI226958414, Length=342, Percent_Identity=27.7777777777778, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI4557231, Length=402, Percent_Identity=26.3681592039801, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI187960098, Length=402, Percent_Identity=26.3681592039801, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI4557233, Length=337, Percent_Identity=28.7833827893175, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI4501857, Length=391, Percent_Identity=24.2966751918159, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI4501859, Length=398, Percent_Identity=24.3718592964824, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI7656849, Length=347, Percent_Identity=25.3602305475504, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI4557235, Length=372, Percent_Identity=24.7311827956989, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI76496475, Length=372, Percent_Identity=24.7311827956989, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI21361497, Length=307, Percent_Identity=25.7328990228013, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI38505218, Length=303, Percent_Identity=26.0726072607261, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI87081958, Length=395, Percent_Identity=22.5316455696203, Blast_Score=88, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17570075, Length=413, Percent_Identity=30.2663438256659, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17538396, Length=400, Percent_Identity=26.25, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17505929, Length=345, Percent_Identity=26.3768115942029, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17569725, Length=343, Percent_Identity=27.4052478134111, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17551932, Length=337, Percent_Identity=26.1127596439169, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17508101, Length=341, Percent_Identity=26.9794721407625, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17534899, Length=347, Percent_Identity=25.3602305475504, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17506239, Length=345, Percent_Identity=26.0869565217391, Blast_Score=89, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI32563615, Length=217, Percent_Identity=27.6497695852535, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71990804, Length=281, Percent_Identity=24.5551601423488, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17533517, Length=355, Percent_Identity=25.0704225352113, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71982178, Length=229, Percent_Identity=26.6375545851528, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24660351, Length=322, Percent_Identity=29.5031055900621, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI21356377, Length=344, Percent_Identity=26.453488372093, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24646207, Length=334, Percent_Identity=27.5449101796407, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI21355753, Length=350, Percent_Identity=26.8571428571429, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI281363737, Length=354, Percent_Identity=25.7062146892655, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24666513, Length=303, Percent_Identity=26.4026402640264, Blast_Score=86, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 45044; Mature: 45044

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFDDTPEEAAYRAKVRSWLRENAPAGTRESRLRRNAGEDLVAEAKAWQAKKADAGYAGI
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
LRPKAWGGGGGGLMEEVIFGEEEDALGLYYGIFTIGVGMCVPTLLAYSDAETKERLVRPT
CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
IRGEKIWCQLFSEPGGGSDLAGVRTRAERDGDDWVVSGQKIWTSNAHIADYGILLVRTDP
CCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCEEEECCEEECCCCEEEEEEEEEEECCC
AVPKHKGMTMFWIDMRNSPGLEMRRIHQISGMSEFNEVFFTDVRVPDAQRIGEVNDGWRV
CCCCCCCCEEEEEEECCCCCHHHHHHHHHCCHHHHHHHHEEECCCCCHHHCCCCCCCCEE
SLVTLMNERLTTGSSRGPDWQELVGLGRRTPAGDAPAIAHGAVRERIADWYVKSEGLRLT
EHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEH
RLRSITAISRGEQPGPEASIAKLVAASQAQDIAMEAVETLDQFGIIADPEIAPLGAAFQQ
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
ALMMSPSRRIAGGTDEILRNIIAERVLGLPGDIRVDRDLPFRDIPTGRRD
HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MDFDDTPEEAAYRAKVRSWLRENAPAGTRESRLRRNAGEDLVAEAKAWQAKKADAGYAGI
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
LRPKAWGGGGGGLMEEVIFGEEEDALGLYYGIFTIGVGMCVPTLLAYSDAETKERLVRPT
CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
IRGEKIWCQLFSEPGGGSDLAGVRTRAERDGDDWVVSGQKIWTSNAHIADYGILLVRTDP
CCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCEEEECCEEECCCCEEEEEEEEEEECCC
AVPKHKGMTMFWIDMRNSPGLEMRRIHQISGMSEFNEVFFTDVRVPDAQRIGEVNDGWRV
CCCCCCCCEEEEEEECCCCCHHHHHHHHHCCHHHHHHHHEEECCCCCHHHCCCCCCCCEE
SLVTLMNERLTTGSSRGPDWQELVGLGRRTPAGDAPAIAHGAVRERIADWYVKSEGLRLT
EHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEH
RLRSITAISRGEQPGPEASIAKLVAASQAQDIAMEAVETLDQFGIIADPEIAPLGAAFQQ
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
ALMMSPSRRIAGGTDEILRNIIAERVLGLPGDIRVDRDLPFRDIPTGRRD
HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]