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The map label for this gene is yfdE [H]

Identifier: 197106003

GI number: 197106003

Start: 2917761

End: 2918996

Strand: Reverse

Name: yfdE [H]

Synonym: PHZ_c2542

Alternate gene names: 197106003

Gene position: 2918996-2917761 (Counterclockwise)

Preceding gene: 197106004

Following gene: 197106002

Centisome position: 73.04

GC content: 69.5

Gene sequence:

>1236_bases
GTGGAGCCTTCGCAGACCCCCCAGGACAAGCTGCCGCTCAGCGGCGTTCGGGTGCTGGACCTCAGCCGGATGGTCGCTGC
GCCCTGGGCGACCCAGATCCTCGGCGACCTGGGCGCGGAAGTGATCAAGGTGGAGCGGCCCGGGGTCGGCGACGACATGC
GCGGCTACGGTCCGCCGTTCCTGAAGGACAGGGAAGGGCGCGACGATGACTCGCCCTATCACTTGGCGGTCAACCGCAAC
AAGAAGTCGATCACCGTCAATCTGGCCAGCCCGGAAGGACGCGAGCTGATCCGGGGCCTCGCGGCGGCCAGCGACGTCCT
GGTCGAGAACTACAAGGTCGGCGACCTGAAGCGCCACGGGCTCGACTACGAGTCACTCGCGGCGCTGAATCCCAACCTCG
TCTACTGCTCGGTGACCGGTTTCGGGCAGACGGGCCCCTATGCCCACCAGCCGGGTCTGGACAGCCTCTTCCAGGCCATG
TCGGGGCTGATGAGCATAACGGGCGATCCCGACGTGCCGCCGCAGAAGGTGGGCGTGGCGATCTCTGACTTCACCGCCGG
CATGTACGCCACGGTGGCGATCTTCGCCGCCCTCCGGCATCGAGACATGAATGGCGGCGGCGGCCAGCACATCGACATCT
CCCTCCTGGACTGCCAGATGGCCGCGCTGTCGCACCGGGCGCAGACCTATCTGGTCTCGGGAGAGGTGCCCCAGCGCAAC
GGGGCCAGCACGCCGGGCAACCAGCCGGCGGGGCTCTACGCCGTGGCCGACGGCCAGATCATCTTGTCGGCGGGTTCCGA
GACCCAGTTCGCCAACCTCGCCCGCGCGCTCGGCCGGCCGGAGATGGCCGCGGACGCCAGGTTCGCGACCCGGCAGGCGC
GCGTGCAGAACGTCGCTGCGCTCACCCGCGAGATGGAGGAAGTGCTGGCCACCCGGCCGCGGCGGCGGTGGATCGAGCTG
TTCCAGGCGGCCGGGGTCATGTGCGCGCCGATCAACACCATCGCGGACGCCTTCGAGGACCCGCAGGTGCGGCATCGCGG
CATCGTGGTGAAGACCCCCCATCCCACGGCCGGCGAAACCCCGCTGATCGCGAGCCCGATCCGGCTGTCGAAGACGCCGG
TCCGCCCCTTCGCCACGCCCCCGCGGCTTGGCCAGCATACCGAGGAGGTCCTCGGCGAGGTGCTGGGCATGGATGCGGGT
GAGATCGAACAACTGCGGAGCAAGGGCGCGGTCTGA

Upstream 100 bases:

>100_bases
GTGGGCGGCCTGGCGTGACTCGGGCCTGACCGGGATCACCTTCCGCAAGATGACCGACGAAGCGATCGAGCTGATCGCCA
AGATCGCACGGGAGTAGCGC

Downstream 100 bases:

>100_bases
CCGAGCGCCGCATCGACGGAGAGCAGAGCATGGATTTGACCCTCGGCGAAGAGTACGACGCCTTCCGGGAGGAGGTCCTG
CAGTTCCTCGCCGAGGCCTG

Product: acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MEPSQTPQDKLPLSGVRVLDLSRMVAAPWATQILGDLGAEVIKVERPGVGDDMRGYGPPFLKDREGRDDDSPYHLAVNRN
KKSITVNLASPEGRELIRGLAAASDVLVENYKVGDLKRHGLDYESLAALNPNLVYCSVTGFGQTGPYAHQPGLDSLFQAM
SGLMSITGDPDVPPQKVGVAISDFTAGMYATVAIFAALRHRDMNGGGGQHIDISLLDCQMAALSHRAQTYLVSGEVPQRN
GASTPGNQPAGLYAVADGQIILSAGSETQFANLARALGRPEMAADARFATRQARVQNVAALTREMEEVLATRPRRRWIEL
FQAAGVMCAPINTIADAFEDPQVRHRGIVVKTPHPTAGETPLIASPIRLSKTPVRPFATPPRLGQHTEEVLGEVLGMDAG
EIEQLRSKGAV

Sequences:

>Translated_411_residues
MEPSQTPQDKLPLSGVRVLDLSRMVAAPWATQILGDLGAEVIKVERPGVGDDMRGYGPPFLKDREGRDDDSPYHLAVNRN
KKSITVNLASPEGRELIRGLAAASDVLVENYKVGDLKRHGLDYESLAALNPNLVYCSVTGFGQTGPYAHQPGLDSLFQAM
SGLMSITGDPDVPPQKVGVAISDFTAGMYATVAIFAALRHRDMNGGGGQHIDISLLDCQMAALSHRAQTYLVSGEVPQRN
GASTPGNQPAGLYAVADGQIILSAGSETQFANLARALGRPEMAADARFATRQARVQNVAALTREMEEVLATRPRRRWIEL
FQAAGVMCAPINTIADAFEDPQVRHRGIVVKTPHPTAGETPLIASPIRLSKTPVRPFATPPRLGQHTEEVLGEVLGMDAG
EIEQLRSKGAV
>Mature_411_residues
MEPSQTPQDKLPLSGVRVLDLSRMVAAPWATQILGDLGAEVIKVERPGVGDDMRGYGPPFLKDREGRDDDSPYHLAVNRN
KKSITVNLASPEGRELIRGLAAASDVLVENYKVGDLKRHGLDYESLAALNPNLVYCSVTGFGQTGPYAHQPGLDSLFQAM
SGLMSITGDPDVPPQKVGVAISDFTAGMYATVAIFAALRHRDMNGGGGQHIDISLLDCQMAALSHRAQTYLVSGEVPQRN
GASTPGNQPAGLYAVADGQIILSAGSETQFANLARALGRPEMAADARFATRQARVQNVAALTREMEEVLATRPRRRWIEL
FQAAGVMCAPINTIADAFEDPQVRHRGIVVKTPHPTAGETPLIASPIRLSKTPVRPFATPPRLGQHTEEVLGEVLGMDAG
EIEQLRSKGAV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=400, Percent_Identity=43, Blast_Score=329, Evalue=3e-90,
Organism=Homo sapiens, GI300863124, Length=426, Percent_Identity=40.3755868544601, Blast_Score=315, Evalue=6e-86,
Organism=Homo sapiens, GI300863126, Length=400, Percent_Identity=38.75, Blast_Score=281, Evalue=1e-75,
Organism=Homo sapiens, GI13376042, Length=426, Percent_Identity=36.6197183098592, Blast_Score=266, Evalue=3e-71,
Organism=Homo sapiens, GI266456254, Length=400, Percent_Identity=26.75, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI42794625, Length=400, Percent_Identity=26.75, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI266458393, Length=265, Percent_Identity=29.0566037735849, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI266458397, Length=265, Percent_Identity=29.0566037735849, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI266458395, Length=152, Percent_Identity=31.5789473684211, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI42822893, Length=152, Percent_Identity=31.5789473684211, Blast_Score=83, Evalue=4e-16,
Organism=Escherichia coli, GI87082093, Length=388, Percent_Identity=33.7628865979381, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1788717, Length=423, Percent_Identity=30.2600472813239, Blast_Score=178, Evalue=7e-46,
Organism=Escherichia coli, GI1786222, Length=409, Percent_Identity=26.8948655256724, Blast_Score=114, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI115535051, Length=379, Percent_Identity=26.9129287598945, Blast_Score=105, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI32564160, Length=348, Percent_Identity=26.1494252873563, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=41.9354838709677, Blast_Score=315, Evalue=3e-86,
Organism=Drosophila melanogaster, GI24585488, Length=329, Percent_Identity=24.3161094224924, Blast_Score=95, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44079; Mature: 44079

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPSQTPQDKLPLSGVRVLDLSRMVAAPWATQILGDLGAEVIKVERPGVGDDMRGYGPPF
CCCCCCCCCCCCCCCEEHHHHHHHHHCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
LKDREGRDDDSPYHLAVNRNKKSITVNLASPEGRELIRGLAAASDVLVENYKVGDLKRHG
CCCCCCCCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHC
LDYESLAALNPNLVYCSVTGFGQTGPYAHQPGLDSLFQAMSGLMSITGDPDVPPQKVGVA
CCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCHHHHCEE
ISDFTAGMYATVAIFAALRHRDMNGGGGQHIDISLLDCQMAALSHRAQTYLVSGEVPQRN
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHCCCEEEEECCCCCCC
GASTPGNQPAGLYAVADGQIILSAGSETQFANLARALGRPEMAADARFATRQARVQNVAA
CCCCCCCCCCCEEEEECCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LTREMEEVLATRPRRRWIELFQAAGVMCAPINTIADAFEDPQVRHRGIVVKTPHPTAGET
HHHHHHHHHHCCCHHHHHHHHHHCCCEEECHHHHHHHHCCCCHHHCCEEEECCCCCCCCC
PLIASPIRLSKTPVRPFATPPRLGQHTEEVLGEVLGMDAGEIEQLRSKGAV
CEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MEPSQTPQDKLPLSGVRVLDLSRMVAAPWATQILGDLGAEVIKVERPGVGDDMRGYGPPF
CCCCCCCCCCCCCCCEEHHHHHHHHHCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
LKDREGRDDDSPYHLAVNRNKKSITVNLASPEGRELIRGLAAASDVLVENYKVGDLKRHG
CCCCCCCCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHC
LDYESLAALNPNLVYCSVTGFGQTGPYAHQPGLDSLFQAMSGLMSITGDPDVPPQKVGVA
CCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCHHHHCEE
ISDFTAGMYATVAIFAALRHRDMNGGGGQHIDISLLDCQMAALSHRAQTYLVSGEVPQRN
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHCCCEEEEECCCCCCC
GASTPGNQPAGLYAVADGQIILSAGSETQFANLARALGRPEMAADARFATRQARVQNVAA
CCCCCCCCCCCEEEEECCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LTREMEEVLATRPRRRWIELFQAAGVMCAPINTIADAFEDPQVRHRGIVVKTPHPTAGET
HHHHHHHHHHCCCHHHHHHHHHHCCCEEECHHHHHHHHCCCCHHHCCEEEECCCCCCCCC
PLIASPIRLSKTPVRPFATPPRLGQHTEEVLGEVLGMDAGEIEQLRSKGAV
CEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]